protvista-uniprot 2.13.2 → 3.0.1

package/src/utils.ts

@@ -0,0 +1,37 @@
+export const renameProperties = (features) =>
+  features.map((ft) => ({
+    ...ft,
+    start: ft.begin || undefined,
+  }));
+
+export const loadComponent = (
+  name: string,
+  elementConstructor: CustomElementConstructor
+) => {
+  if (!customElements.get(name)) {
+    customElements.define(name, elementConstructor);
+  }
+};
+
+// Returns an object of the form url => payload json
+// getUrl optional function modifies url string
+export const fetchAll = async (urls: string[], getUrl = null) =>
+  Object.fromEntries(
+    await Promise.all(
+      urls.map(async (url) => {
+        try {
+          const response = await fetch(getUrl ? getUrl(url) : url);
+          if (!response.ok) {
+            // TODO handle this better based on error code
+            // Fail silently for now
+            console.warn(`HTTP error status: ${response.status} at ${url}`);
+            return [url, null];
+          }
+          return [url, await response.json()];
+        } catch (error) {
+          console.warn(`Failed to fetch or parse JSON from ${url}:`, error);
+          return [url, null]; // or handle error data as needed
+        }
+      })
+    )
+  );

package/dist/es/commonTypes.js

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=commonTypes.js.map

package/dist/es/commonTypes.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"commonTypes.js","sourceRoot":"","sources":["../../src/commonTypes.ts"],"names":[],"mappings":""}

package/dist/es/filterConfig.d.ts

@@ -1,20 +0,0 @@
-export declare const getFilteredVariants: (variants: ProtvistaVariationData, callbackFilter: (variantPos: ProtvistaVariant) => void) => {
-    variants: ProtvistaVariant[];
-}[];
-declare const filterConfig: {
-    name: string;
-    type: {
-        name: string;
-        text: string;
-    };
-    options: {
-        label: string;
-        color: string;
-    };
-    filterPredicate: (variantPos: any) => any;
-    filterData: (variants: ProtvistaVariationData) => {
-        variants: ProtvistaVariant[];
-    }[];
-}[];
-export declare const colorConfig: (variant: any) => string;
-export default filterConfig;

package/dist/es/filterConfig.js.map

@@ -1 +0,0 @@
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package/dist/es/loadComponents.d.ts

@@ -1,2 +0,0 @@
-declare const loadComponent: (name: string, elementConstructor: CustomElementConstructor) => void;
-export { loadComponent };

package/dist/es/loadComponents.js

@@ -1,7 +0,0 @@
-const loadComponent = function (name, elementConstructor) {
-    if (!customElements.get(name)) {
-        customElements.define(name, elementConstructor);
-    }
-};
-export { loadComponent };
-//# sourceMappingURL=loadComponents.js.map

package/dist/es/loadComponents.js.map

@@ -1 +0,0 @@
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package/dist/es/protvista-alphafold-confidence.d.ts

@@ -1,9 +0,0 @@
-import { AlphafoldPayload } from './commonTypes';
-export declare const getConfidenceURLFromPayload: (data: AlphafoldPayload) => string;
-type PartialProtein = {
-    sequence: {
-        sequence: string;
-    };
-};
-export declare const transformData: (data: AlphafoldPayload, protein: PartialProtein) => Promise<string>;
-export {};

package/dist/es/protvista-alphafold-confidence.js.map

@@ -1 +0,0 @@
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package/dist/es/protvista-alphamissense-heatmap.d.ts

@@ -1,8 +0,0 @@
-import { AlphafoldPayload } from './commonTypes';
-type PartialProtein = {
-    sequence: {
-        sequence: string;
-    };
-};
-export declare const transformData: (data: AlphafoldPayload, protein: PartialProtein) => Promise<Record<string, string>[]>;
-export {};

package/dist/es/protvista-alphamissense-heatmap.js.map

@@ -1 +0,0 @@
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package/dist/es/protvista-alphamissense-pathogenicity.d.ts

@@ -1,10 +0,0 @@
-import { AlphafoldPayload } from './commonTypes';
-export declare const rowSplitter: RegExp;
-export declare const cellSplitter: RegExp;
-type PartialProtein = {
-    sequence: {
-        sequence: string;
-    };
-};
-export declare const transformData: (data: AlphafoldPayload, protein: PartialProtein) => Promise<string>;
-export {};

package/dist/es/protvista-alphamissense-pathogenicity.js.map

@@ -1 +0,0 @@
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package/dist/es/protvista-ptm-exchange.js.map

@@ -1 +0,0 @@
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package/dist/es/protvista-variation-graph-adapter.js.map

@@ -1 +0,0 @@
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package/src/loadComponents.ts

@@ -1,10 +0,0 @@
-const loadComponent = function (
-  name: string,
-  elementConstructor: CustomElementConstructor
-) {
-  if (!customElements.get(name)) {
-    customElements.define(name, elementConstructor);
-  }
-};
-
-export { loadComponent };

package/src/types/nightingale-components.d.ts

@@ -1,13 +0,0 @@
-export type NightingaleEvent = Event & {
-  detail?: {
-    displaystart?: number;
-    displayend?: number;
-    eventType?: "click" | "mouseover" | "mouseout" | "reset";
-    feature?: any;
-    coords?: [number, number];
-  };
-};
-
-type NightingaleDataAdapter = {
-  transformData;
-};

package/src/types/nightingale-sequence-heatmap.d.ts

@@ -1 +0,0 @@
-declare module '@nightingale-elements/nightingale-sequence-heatmap';

package/src/types/protvista-feature-adapter.d.ts

@@ -1 +0,0 @@
-declare module 'protvista-feature-adapter';

package/src/types/protvista-interpro-adapter.d.ts

@@ -1 +0,0 @@
-declare module 'protvista-interpro-adapter';

package/src/types/protvista-proteomics-adapter.d.ts

@@ -1 +0,0 @@
-declare module 'protvista-proteomics-adapter';

package/src/types/protvista-structure-adapter.d.ts

@@ -1 +0,0 @@
-declare module 'protvista-structure-adapter';

package/src/types/protvista-structure.d.ts

@@ -1 +0,0 @@
-declare module 'protvista-structure';

package/src/types/protvista-variation.d.ts

@@ -1,15 +0,0 @@
-declare module 'protvista-variation';
-
-type ProtvistaVariant =
-  import('protvista-variation-adapter/dist/es/variants').Variant & {
-    hasPredictions?: boolean;
-    xrefNames?: string[];
-  };
-
-type ProtvistaVariationData = {
-  variants: ProtvistaVariant[];
-}[];
-
-declare class ProtvistaVariation extends HTMLElement {
-  colorConfig: (variant: any) => string;
-}