progmune-runtime 2.1.6 → 3.2.1

package/dist/knowledge-object.js

@@ -0,0 +1,316 @@
+"use strict";
+/**
+ * Progmune V9 — Knowledge Object System
+ * ======================================
+ * 将整个 Pipeline 的输出统一为一种对象：Knowledge Object。
+ *
+ * 一个 Knowledge Object 包含:
+ *   - Claim:         我们相信什么
+ *   - Status:        Supported / Refuted / Undecided / Conflicting
+ *   - Proof:         形式推导链
+ *   - Counterexample: 反例（如果有）
+ *   - Evidence:      所有独立证据源
+ *   - Belief:        综合可信度
+ *   - Dependencies:  依赖的其他 Claim
+ *   - History:       这个 Claim 的形成历史
+ *
+ * 核心理念:
+ *   Pipeline 输出不再是分散的 JSON 文件。
+ *   所有层（Recovery、Reasoning、Belief）写同一个 Knowledge Object。
+ *   每个 Claim 知道自己来自哪里、为什么被相信、谁在反对它。
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.buildKnowledgeBase = buildKnowledgeBase;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+// ══════════════════════════════════════════════
+// V9: KNOWLEDGE OBJECT ASSEMBLY
+// ══════════════════════════════════════════════
+/**
+ * Assemble all pipeline outputs into a unified Knowledge Base.
+ * Instead of N separate JSON files, every piece of knowledge
+ * goes into one Knowledge Object per claim.
+ *
+ * V7 provides: proof + provenance + refutation
+ * V8 provides: belief + evidence sources
+ */
+function assembleKnowledgeBase(provenanceReport, beliefReport) {
+    const claims = [];
+    const claimIds = new Set();
+    // Index belief assessments by predicate+domain
+    const beliefIndex = new Map();
+    for (const ba of beliefReport.assessments || []) {
+        const key = `${ba.predicate}::${ba.domain}`;
+        beliefIndex.set(key, ba);
+    }
+    for (const inv of provenanceReport.invariants || []) {
+        const id = inv.id;
+        // Ensure uniqueness: append domain if ID collides
+        const uniqueId = claimIds.has(id) ? `${id}@${inv.domain}` : id;
+        claimIds.add(uniqueId);
+        const key = `${inv.predicate}::${inv.domain}`;
+        const belief = beliefIndex.get(key);
+        // ── Determine status ──
+        let status;
+        if (inv.isRefuted) {
+            // Check if there's also supporting evidence (conflict)
+            const supportingEvidence = (belief?.sources || []).filter((s) => s.massFor > 0.5);
+            if (supportingEvidence.length >= 2) {
+                status = "CONFLICTING"; // Both support and refutation exist
+            }
+            else {
+                status = "REFUTED";
+            }
+        }
+        else if (belief && belief.combinedBelief >= 75) {
+            status = "SUPPORTED";
+        }
+        else if (belief && belief.combinedBelief < 50) {
+            status = "UNDECIDED";
+        }
+        else {
+            status = "SUPPORTED"; // Default: survived refutation with reasonable belief
+        }
+        // ── Build proof steps ──
+        const proofSteps = [];
+        const derivation = inv.derivation || {};
+        // Add OBSERVATION step
+        const obsNode = derivation._obsNode || {};
+        if (obsNode.conclusion) {
+            proofSteps.push({
+                rule: "OBSERVATION",
+                from: [],
+                description: obsNode.conclusion,
+            });
+        }
+        // Add STATE_MACHINE step
+        const smNode = derivation._smNode || {};
+        if (smNode.conclusion) {
+            proofSteps.push({
+                rule: "STATE_MACHINE",
+                from: proofSteps.length > 0 ? [`OBSERVATION`] : [],
+                description: smNode.conclusion,
+            });
+        }
+        // Add the top-level derivation step
+        if (derivation.rule && derivation.rule !== "OBSERVATION" && derivation.rule !== "STATE_MACHINE") {
+            proofSteps.push({
+                rule: derivation.rule,
+                from: proofSteps.length > 0 ? [`STATE_MACHINE`] : [],
+                description: derivation.conclusion || inv.predicate,
+            });
+        }
+        // ── Collect evidence sources ──
+        const evidenceSources = (belief?.sources || []).map((s) => ({
+            name: s.name,
+            direction: s.massAgainst > s.massFor ? "OPPOSING" : s.massFor > 0.5 ? "SUPPORTING" : "NEUTRAL",
+            massFor: s.massFor,
+            massAgainst: s.massAgainst,
+            massUncertain: s.massUncertain,
+            reasoning: s.reasoning,
+        }));
+        // ── Build knowledge object ──
+        const ko = {
+            id: uniqueId,
+            domain: inv.domain || "unknown",
+            claim: inv.predicate,
+            logicType: inv.logicType || "REQUIRES",
+            status,
+            proof: {
+                isAxiom: proofSteps.length <= 1,
+                derivationDepth: inv.derivationDepth || 1,
+                steps: proofSteps,
+                origin: {
+                    sourceFile: derivation.provenance?.sourceFile || "unknown",
+                    sourceLine: derivation.provenance?.sourceLine || 0,
+                    extractionMethod: derivation.provenance?.extractionMethod || "unknown",
+                    transformationChain: derivation.provenance?.transformationChain || [],
+                },
+            },
+            counterexamples: inv.isRefuted ? [{
+                    path: inv.counterexamplePath || [],
+                    explanation: inv.counterexampleExplanation || "",
+                    method: "BFS",
+                    timestamp: provenanceReport.timestamp,
+                }] : [],
+            evidence: evidenceSources,
+            belief: {
+                score: belief?.combinedBelief || 0,
+                disbelief: belief?.combinedDisbelief || 0,
+                uncertainty: belief?.combinedUncertainty || 0,
+                level: inv.isRefuted ? "REFUTED" : belief?.beliefLevel || "HIGH",
+            },
+            dependencies: [],
+            dependents: [],
+            history: {
+                discovered: provenanceReport.timestamp,
+                lastVerified: new Date().toISOString(),
+                statusChanges: [],
+            },
+        };
+        claims.push(ko);
+    }
+    // ── Build argument graph edges ──
+    const edges = [];
+    // Dependencies: claims that share atoms in an implication chain
+    for (const c1 of claims) {
+        for (const c2 of claims) {
+            if (c1.id === c2.id)
+                continue;
+            const m1 = c1.claim.match(/(\w+)\s*⇒\s*(\w+)/);
+            const m2 = c2.claim.match(/(\w+)\s*⇒\s*(\w+)/);
+            // DEPENDS_ON: c1.claim = "A⇒B", c2.claim = "B⇒C" → c1 depends on c2
+            if (m1 && m2 && m1[2].toLowerCase() === m2[1].toLowerCase()) {
+                edges.push({ from: c1.id, to: c2.id, relation: "DEPENDS_ON" });
+                if (!c1.dependencies.includes(c2.id))
+                    c1.dependencies.push(c2.id);
+                if (!c2.dependents.includes(c1.id))
+                    c2.dependents.push(c1.id);
+            }
+            // CONFLICTS: same atoms, opposite directions
+            if (m1 && m2 &&
+                m1[1].toLowerCase() === m2[2].toLowerCase() &&
+                m1[2].toLowerCase() === m2[1].toLowerCase()) {
+                edges.push({ from: c1.id, to: c2.id, relation: "CONFLICTS" });
+            }
+        }
+        // SUPPORTS: evidence direction
+        for (const ev of c1.evidence) {
+            if (ev.direction === "SUPPORTING") {
+                // Self-supporting — already captured
+            }
+            if (ev.direction === "OPPOSING") {
+                // OPPOSES: evidence against this claim
+                edges.push({ from: `EVIDENCE:${ev.name}`, to: c1.id, relation: "OPPOSES" });
+            }
+        }
+    }
+    // Compute summary
+    const supported = claims.filter(c => c.status === "SUPPORTED").length;
+    const refuted = claims.filter(c => c.status === "REFUTED").length;
+    const undecided = claims.filter(c => c.status === "UNDECIDED").length;
+    const conflicting = claims.filter(c => c.status === "CONFLICTING").length;
+    const avgBelief = Math.round(claims.reduce((s, c) => s + c.belief.score, 0) / claims.length);
+    const depths = claims.map(c => c.proof.derivationDepth);
+    const kb = {
+        timestamp: new Date().toISOString(),
+        projectPath: provenanceReport.projectPath || "",
+        summary: {
+            totalClaims: claims.length,
+            supported,
+            refuted,
+            undecided,
+            conflicting,
+            averageBelief: avgBelief,
+            proofDepthRange: {
+                min: depths.length > 0 ? Math.min(...depths) : 0,
+                max: depths.length > 0 ? Math.max(...depths) : 0,
+                avg: depths.length > 0 ? Math.round(depths.reduce((a, b) => a + b, 0) / depths.length) : 0,
+            },
+        },
+        claims,
+        argumentGraph: {
+            nodes: claims.map(c => c.id),
+            edges,
+        },
+    };
+    return kb;
+}
+// ══════════════════════════════════════════════
+// MAIN
+// ══════════════════════════════════════════════
+function buildKnowledgeBase(projectPath) {
+    console.log("🔬 Progmune Knowledge Object System — V9");
+    console.log("   Project:", projectPath);
+    const provenancePath = path.join(projectPath, ".progmune_provenance.json");
+    const beliefPath = path.join(projectPath, ".progmune_belief.json");
+    if (!fs.existsSync(provenancePath) || !fs.existsSync(beliefPath)) {
+        console.log("   Run V7 and V8 first.");
+        return { timestamp: new Date().toISOString(), projectPath, summary: { totalClaims: 0, supported: 0, refuted: 0, undecided: 0, conflicting: 0, averageBelief: 0, proofDepthRange: { min: 0, max: 0, avg: 0 } }, claims: [], argumentGraph: { nodes: [], edges: [] } };
+    }
+    const provenance = JSON.parse(fs.readFileSync(provenancePath, "utf-8"));
+    const belief = JSON.parse(fs.readFileSync(beliefPath, "utf-8"));
+    const kb = assembleKnowledgeBase(provenance, belief);
+    // Print summary
+    console.log(`\n   ${kb.summary.totalClaims} claims in Knowledge Base`);
+    console.log(`   SUPPORTED:    ${kb.summary.supported}  ← all evidence supports`);
+    console.log(`   REFUTED:      ${kb.summary.refuted}   ← counterexample found`);
+    console.log(`   CONFLICTING:  ${kb.summary.conflicting}   ← both support & refutation exist`);
+    console.log(`   UNDECIDED:    ${kb.summary.undecided}   ← insufficient evidence`);
+    // Show the argument graph
+    console.log(`\n   Argument Graph: ${kb.argumentGraph.nodes.length} nodes, ${kb.argumentGraph.edges.length} edges`);
+    const depEdges = kb.argumentGraph.edges.filter(e => e.relation === "DEPENDS_ON");
+    const conflictEdges = kb.argumentGraph.edges.filter(e => e.relation === "CONFLICTS");
+    console.log(`   DEPENDS_ON: ${depEdges.length}  |  CONFLICTS: ${conflictEdges.length}`);
+    // Show example knowledge objects
+    console.log("\n   ── REFUTED Claim ──");
+    const refutedClaim = kb.claims.find(c => c.status === "REFUTED");
+    if (refutedClaim) {
+        console.log(`   ❌ ${refutedClaim.claim}`);
+        console.log(`      Status: ${refutedClaim.status} | Belief: ${refutedClaim.belief.score}%`);
+        console.log(`      Counterexamples: ${refutedClaim.counterexamples.length}`);
+        console.log(`      Evidence sources:`);
+        for (const ev of refutedClaim.evidence) {
+            const icon = ev.direction === "OPPOSING" ? "↓" : ev.direction === "SUPPORTING" ? "↑" : "→";
+            console.log(`        ${icon} ${ev.name}: ${ev.reasoning.slice(0, 80)}`);
+        }
+    }
+    console.log("\n   ── SUPPORTED Claim ──");
+    const supportedClaim = kb.claims.find(c => c.status === "SUPPORTED" && c.logicType === "FORBIDS");
+    if (supportedClaim) {
+        console.log(`   ✅ ${supportedClaim.claim}`);
+        console.log(`      Status: ${supportedClaim.status} | Belief: ${supportedClaim.belief.score}%`);
+        console.log(`      Proof depth: ${supportedClaim.proof.derivationDepth}`);
+        console.log(`      Origin: ${supportedClaim.proof.origin.sourceFile}`);
+    }
+    return kb;
+}
+// ══════════════════════════════════════════════
+// CLI
+// ══════════════════════════════════════════════
+if (require.main === module) {
+    const targetProject = process.argv[2];
+    if (!targetProject) {
+        console.error("Usage: npx ts-node src/knowledge-object.ts <project-path>");
+        process.exit(1);
+    }
+    const kb = buildKnowledgeBase(targetProject);
+    const outputPath = path.join(targetProject, ".progmune_knowledge.json");
+    fs.writeFileSync(outputPath, JSON.stringify(kb, null, 2));
+    console.log(`\n✅ Knowledge Base saved to: ${outputPath}`);
+    console.log(`   This single file replaces all previous .progmune_*.json outputs.`);
+    console.log(`   Every claim is a Knowledge Object: Claim + Proof + Evidence + Belief + History.`);
+}

package/dist/knowledge-package.js

@@ -0,0 +1,98 @@
+"use strict";
+/**
+ * Knowledge Package — Standalone exportable protocol domain package
+ *
+ * Each domain (TLS, SSH, HTTP) can be exported as a self-contained
+ * JSON package with all units, evidence, concepts, and version history.
+ *
+ * Usage:
+ *   npx ts-node src/knowledge-package.ts TLS
+ *   npx ts-node src/knowledge-package.ts --all
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.packageDomain = packageDomain;
+exports.packageAll = packageAll;
+const fs = __importStar(require("fs"));
+const protocol_knowledge_1 = require("./protocol-knowledge");
+function packageDomain(domain) {
+    const kb = (0, protocol_knowledge_1.buildKnowledgeBase)();
+    const units = kb.units.filter(u => u.domain === domain);
+    if (units.length === 0)
+        throw new Error(`Domain not found: ${domain}`);
+    const stable = units.filter(u => u.maturity === "stable");
+    const allConcepts = units.flatMap(u => u.concepts || []);
+    const allEvidence = units.flatMap(u => u.evidence || []);
+    const allRepos = [...new Set(units.flatMap(u => u.validatedRepos))];
+    const allRFCs = [...new Set(units.map(u => u.rfcReference).filter(Boolean))];
+    return {
+        name: `${domain} Protocol Domain`,
+        domain,
+        version: kb.version,
+        exported: new Date().toISOString(),
+        units,
+        summary: {
+            totalUnits: units.length,
+            stableUnits: stable.length,
+            totalConcepts: allConcepts.length,
+            totalEvidence: allEvidence.length,
+            validatedRepos: allRepos,
+            rfcReferences: allRFCs,
+        },
+    };
+}
+function packageAll() {
+    const kb = (0, protocol_knowledge_1.buildKnowledgeBase)();
+    const domains = [...new Set(kb.units.map(u => u.domain))];
+    return domains.map(packageDomain);
+}
+if (require.main === module) {
+    const args = process.argv.slice(2);
+    if (args.includes("--all")) {
+        const pkgs = packageAll();
+        for (const pkg of pkgs) {
+            const path = `benchmarks/kb-package-${pkg.domain.toLowerCase()}.json`;
+            if (!fs.existsSync("benchmarks"))
+                fs.mkdirSync("benchmarks");
+            fs.writeFileSync(path, JSON.stringify(pkg, null, 2));
+            console.log(`✅ ${pkg.domain}: ${pkg.summary.totalUnits} units, ${pkg.summary.stableUnits} stable → ${path}`);
+        }
+    }
+    else {
+        const domain = args[0] || "TLS";
+        const pkg = packageDomain(domain);
+        console.log(JSON.stringify(pkg, null, 2));
+    }
+}