progmune-runtime 2.1.6 → 3.2.1

package/dist/evidence-growth.js

@@ -0,0 +1,143 @@
+"use strict";
+/**
+ * Evidence Growth Pipeline — Auto-scan new repos, suggest evidence
+ *
+ * The flywheel: new repo → scan → evidence candidates → confidence → suggestion → review → update
+ *
+ * Usage:
+ *   npx ts-node src/evidence-growth.ts scan benchmarks/nginx
+ *   npx ts-node src/evidence-growth.ts suggest
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.scanForEvidence = scanForEvidence;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const protocol_detector_1 = require("./protocol-detector");
+const protocol_knowledge_1 = require("./protocol-knowledge");
+function scanForEvidence(repoPath) {
+    const repoName = path.basename(repoPath);
+    const seqFile = path.join(path.dirname(repoPath), `${repoName}-sequences.json`);
+    if (!fs.existsSync(seqFile))
+        throw new Error(`No sequences: ${seqFile}`);
+    const sequences = JSON.parse(fs.readFileSync(seqFile, "utf-8"));
+    const kb = (0, protocol_knowledge_1.buildKnowledgeBase)();
+    const candidates = [];
+    // Match protocols
+    const matchCounts = {};
+    for (const seq of sequences.slice(0, 50)) {
+        const result = (0, protocol_detector_1.validateProtocolState)(seq.calls || []);
+        for (const p of result.matchedProtocols) {
+            matchCounts[p] = (matchCounts[p] || 0) + 1;
+        }
+    }
+    for (const [proto, count] of Object.entries(matchCounts)) {
+        const unit = kb.units.find(u => u.name === proto);
+        if (!unit)
+            continue;
+        const alreadyEvidenced = (unit.evidence || []).some(e => e.repo === repoName);
+        if (alreadyEvidenced)
+            continue;
+        let suggestion;
+        let reason;
+        if (count >= 10 && !unit.validatedRepos.includes(repoName)) {
+            suggestion = "promote_to_stable";
+            reason = `${count}/50 sequences matched — strong evidence. Adding this repo would make ${unit.name} eligible for stable promotion.`;
+        }
+        else if (count >= 3) {
+            suggestion = "add_evidence";
+            reason = `${count}/50 sequences matched — moderate evidence. Adding would increase confidence by ~5%.`;
+        }
+        else {
+            suggestion = "insufficient";
+            reason = `Only ${count}/50 matched — insufficient for evidence. Need ≥3 matches.`;
+        }
+        candidates.push({
+            repo: repoName,
+            protocol: proto,
+            unitId: unit.id,
+            matchCount: count,
+            confidence: Math.min(90, unit.confidence + (suggestion === "add_evidence" ? 5 : suggestion === "promote_to_stable" ? 10 : 0)),
+            suggestion,
+            reason,
+        });
+    }
+    return candidates.sort((a, b) => b.matchCount - a.matchCount);
+}
+if (require.main === module) {
+    const args = process.argv.slice(2);
+    if (args[0] === "scan" && args[1]) {
+        const candidates = scanForEvidence(args[1]);
+        console.log(`\nEvidence Candidates: ${args[1]}\n`);
+        for (const c of candidates) {
+            const icon = c.suggestion === "promote_to_stable" ? "⭐" : c.suggestion === "add_evidence" ? "✅" : "—";
+            console.log(`  ${icon} ${c.protocol}: ${c.matchCount}/50 matched (${c.confidence}% conf)`);
+            console.log(`     ${c.reason}`);
+        }
+        if (candidates.filter(c => c.suggestion !== "insufficient").length === 0) {
+            console.log("  No evidence candidates found. Need ≥3 protocol matches.");
+        }
+        console.log("");
+    }
+    else if (args[0] === "suggest") {
+        const benchmarkDir = "benchmarks";
+        if (!fs.existsSync(benchmarkDir)) {
+            console.log("No benchmarks directory");
+            process.exit(0);
+        }
+        const allCandidates = [];
+        for (const entry of fs.readdirSync(benchmarkDir)) {
+            const seqFile = path.join(benchmarkDir, `${entry}-sequences.json`);
+            if (fs.existsSync(seqFile)) {
+                try {
+                    allCandidates.push(...scanForEvidence(path.join(benchmarkDir, entry)));
+                }
+                catch { }
+            }
+        }
+        const actionable = allCandidates.filter(c => c.suggestion !== "insufficient");
+        console.log(`\nEvidence Growth Suggestions (${actionable.length} actionable):\n`);
+        for (const c of actionable) {
+            console.log(`  ${c.suggestion === "promote_to_stable" ? "⭐" : "✅"} ${c.repo} → ${c.protocol}: ${c.matchCount}/50 matches`);
+        }
+        if (actionable.length === 0)
+            console.log("  No new evidence to suggest. All repos already covered.\n");
+        else
+            console.log(`\n  Run: npx ts-node src/knowledge-evolution.ts propose benchmarks/<repo>\n`);
+    }
+    else {
+        console.log("Usage: scan <repoPath> | suggest");
+    }
+}

package/dist/evidence-repository.js

@@ -0,0 +1,209 @@
+"use strict";
+/**
+ * Evidence Repository — Centralized validation evidence store
+ *
+ * Collects, indexes, and queries all validation evidence across
+ * all repositories and protocol units. The bottom layer of the
+ * Progmune architecture stack.
+ *
+ * Architecture:
+ *   Governance Platform → Verification Engine → Protocol Ontology → Evidence Repository
+ *
+ * Usage:
+ *   npx ts-node src/evidence-repository.ts
+ *   npx ts-node src/evidence-repository.ts --protocol TLS
+ *   npx ts-node src/evidence-repository.ts --repo curl
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.EVIDENCE_PATH = void 0;
+exports.buildEvidenceRepository = buildEvidenceRepository;
+exports.formatEvidenceTerminal = formatEvidenceTerminal;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const protocol_knowledge_1 = require("./protocol-knowledge");
+const protocol_detector_1 = require("./protocol-detector");
+// ═══════════════════════════════════════════════════════════════
+// Scanner
+// ═══════════════════════════════════════════════════════════════
+const BENCHMARK_REPOS = [
+    { name: "curl", type: "application" },
+    { name: "nginx", type: "application" },
+    { name: "redis", type: "application" },
+    { name: "apache", type: "application" },
+    { name: "openssl", type: "protocol_library" },
+    { name: "libssh", type: "library" },
+    { name: "nghttp2", type: "library" },
+];
+function buildEvidenceRepository() {
+    const kb = (0, protocol_knowledge_1.buildKnowledgeBase)();
+    const repos = [];
+    // Resolve benchmarks dir relative to project root (works from both src/ and dist/)
+    const projectRoot = path.resolve(__dirname, "..");
+    const benchDir = (() => {
+        if (fs.existsSync(path.join(projectRoot, "benchmarks")))
+            return path.join(projectRoot, "benchmarks");
+        if (fs.existsSync(path.join(process.cwd(), "benchmarks")))
+            return path.join(process.cwd(), "benchmarks");
+        return path.join(projectRoot, "benchmarks");
+    })();
+    for (const repo of BENCHMARK_REPOS) {
+        const seqFile = path.join(benchDir, `${repo.name}-sequences.json`);
+        const labelFile = path.join(benchDir, `${repo.name}-labels.json`);
+        if (!fs.existsSync(seqFile))
+            continue;
+        const sequences = JSON.parse(fs.readFileSync(seqFile, "utf-8"));
+        let labeledSeqs = 0;
+        if (fs.existsSync(labelFile)) {
+            const labels = JSON.parse(fs.readFileSync(labelFile, "utf-8"));
+            labeledSeqs = Object.keys(labels.labels || labels).length;
+        }
+        // Match protocols against sequences
+        const matchMap = {};
+        for (const seq of sequences.slice(0, 50)) {
+            const result = (0, protocol_detector_1.validateProtocolState)(seq.calls || []);
+            for (const proto of result.matchedProtocols) {
+                if (!matchMap[proto]) {
+                    const unit = kb.units.find(u => u.name === proto);
+                    matchMap[proto] = { unitId: unit?.id || proto, matchCount: 0, examples: [] };
+                }
+                matchMap[proto].matchCount++;
+                if (matchMap[proto].examples.length < 3) {
+                    matchMap[proto].examples.push((seq.calls || []).slice(0, 5));
+                }
+            }
+        }
+        const protocolMatches = Object.entries(matchMap)
+            .map(([proto, data]) => ({
+            protocol: proto,
+            unitId: data.unitId,
+            matchCount: data.matchCount,
+            totalSequences: Math.min(50, sequences.length),
+            matchRate: Math.round((data.matchCount / Math.min(50, sequences.length)) * 100),
+            examples: data.examples,
+        }))
+            .sort((a, b) => b.matchCount - a.matchCount);
+        repos.push({
+            repo: repo.name,
+            repoType: repo.type,
+            totalSequences: sequences.length,
+            labeledSequences: labeledSeqs,
+            protocolMatches,
+            timestamp: new Date().toISOString().slice(0, 10),
+        });
+    }
+    // Summary
+    const allMatches = repos.flatMap(r => r.protocolMatches);
+    const protoSummary = {};
+    for (const m of allMatches) {
+        if (!protoSummary[m.protocol])
+            protoSummary[m.protocol] = { repos: 0, totalMatches: 0 };
+        protoSummary[m.protocol].repos++;
+        protoSummary[m.protocol].totalMatches += m.matchCount;
+    }
+    const topProtocols = Object.entries(protoSummary)
+        .map(([p, d]) => ({ protocol: p, repos: d.repos, totalMatches: d.totalMatches }))
+        .sort((a, b) => b.repos - a.repos || b.totalMatches - a.totalMatches);
+    return {
+        name: "Progmune Evidence Repository",
+        version: "1.0.0",
+        generated: new Date().toISOString(),
+        repos,
+        summary: {
+            totalRepos: repos.length,
+            totalSequences: repos.reduce((s, r) => s + r.totalSequences, 0),
+            totalLabeledSequences: repos.reduce((s, r) => s + r.labeledSequences, 0),
+            totalProtocolMatches: allMatches.length,
+            reposByType: {
+                application: repos.filter(r => r.repoType === "application").length,
+                library: repos.filter(r => r.repoType === "library").length,
+                protocol_library: repos.filter(r => r.repoType === "protocol_library").length,
+            },
+            topProtocols,
+        },
+    };
+}
+// ═══════════════════════════════════════════════════════════════
+// CLI
+// ═══════════════════════════════════════════════════════════════
+function formatEvidenceTerminal(repo, filter) {
+    const C = { r: "\x1b[0m", b: "\x1b[1m", d: "\x1b[2m", g: "\x1b[32m", y: "\x1b[33m", r2: "\x1b[31m", c: "\x1b[36m" };
+    const l = [];
+    l.push(`\n${C.b}${C.c}Evidence Repository${C.r}  v${repo.version}`);
+    l.push(`${C.d}${repo.summary.totalRepos} repos · ${repo.summary.totalSequences} seqs · ${repo.summary.totalLabeledSequences} labeled · ${repo.summary.totalProtocolMatches} protocol matches${C.r}\n`);
+    // Top protocols
+    l.push(`${C.b}Top Protocols by Evidence:${C.r}`);
+    for (const tp of repo.summary.topProtocols) {
+        const bar = "█".repeat(Math.min(tp.repos, 7));
+        l.push(`  ${bar} ${C.b}${tp.protocol}${C.r}: ${tp.repos} repos, ${tp.totalMatches} total matches`);
+    }
+    // Per-repo breakdown
+    l.push(`\n${C.b}Per-Repository Evidence:${C.r}`);
+    const filteredRepos = filter?.repo ? repo.repos.filter(r => r.repo === filter.repo) : repo.repos;
+    for (const r of filteredRepos) {
+        const typeIcon = r.repoType === "protocol_library" ? "🔬" : r.repoType === "library" ? "📚" : "📦";
+        l.push(`\n  ${typeIcon} ${C.b}${r.repo}${C.r} (${r.repoType}, ${r.totalSequences} seqs, ${r.labeledSequences} labeled)`);
+        if (r.protocolMatches.length === 0) {
+            l.push(`    ${C.d}No protocol matches${C.r}`);
+        }
+        else {
+            for (const m of r.protocolMatches) {
+                const matchBar = m.matchRate >= 30 ? C.g : m.matchRate >= 10 ? C.y : C.d;
+                l.push(`    ${matchBar}${m.matchRate}%${C.r} ${m.protocol}: ${m.matchCount}/${m.totalSequences} sequences`);
+                if (filter?.protocol === m.protocol && m.examples.length > 0) {
+                    for (const ex of m.examples)
+                        l.push(`      ${C.d}${ex.join(" → ")}${C.r}`);
+                }
+            }
+        }
+    }
+    l.push("");
+    return l.join("\n");
+}
+exports.EVIDENCE_PATH = "benchmarks/evidence-repository.json";
+if (require.main === module) {
+    const er = buildEvidenceRepository();
+    const args = process.argv.slice(2);
+    const pIdx = args.indexOf("--protocol");
+    const rIdx = args.indexOf("--repo");
+    const filter = { protocol: pIdx >= 0 ? args[pIdx + 1] : undefined, repo: rIdx >= 0 ? args[rIdx + 1] : undefined };
+    if (args.includes("--export")) {
+        if (!fs.existsSync("benchmarks"))
+            fs.mkdirSync("benchmarks");
+        fs.writeFileSync(exports.EVIDENCE_PATH, JSON.stringify(er, null, 2));
+        console.error(`✅ Exported: ${exports.EVIDENCE_PATH}`);
+    }
+    console.log(formatEvidenceTerminal(er, filter));
+}