pmem-ai 0.7.2 → 0.7.4

package/dist/commands/rebuild.js

@@ -217,9 +217,15 @@ function rebuildCommand(options = {}) {
                 is_candidate: isCandidate,
             };
             (0, db_1.upsertCard)(db, cardRow);
-            // Clear existing explicit and mention relations before re-inserting (preserve inferred edges)
+            // Clear existing explicit, mention, and inferred relations before
+            // re-inserting from the current frontmatter. v0.7.3 (issue #6):
+            // inferred edges (e.g. task→module next_step_of) must also be
+            // re-derived per card — otherwise an incremental rebuild that
+            // re-targets a task's `related` to a different module would
+            // leave the stale inferred edge to the old module in place.
             (0, db_1.deleteExplicitCardEdges)(db, fm.id);
             (0, db_1.deleteMentionEdges)(db, fm.id);
+            (0, db_1.deleteInferredCardEdges)(db, fm.id);
             (0, db_1.deleteCardAliases)(db, fm.id);
             (0, db_1.deleteCardTags)(db, fm.id);
             (0, db_1.deleteCardPaths)(db, fm.id);
@@ -310,25 +316,63 @@ function rebuildCommand(options = {}) {
     });
     // Execute all SQLite writes in a single transaction
     doRebuild();
-    // v0.7.0-a: restore manually inserted edges that were not re-created
-    // by the rebuild loop (preserved across --full rebuilds)
+    // v0.7.3 (issue #6): prune orphan edges after a --full rebuild.
+    // The rebuild loop inserts explicit edges (depends_on, related) from
+    // each card's current frontmatter without checking that the target
+    // card still has a file. If a target card was deleted but the
+    // declaring card's frontmatter still names it (or a card was just
+    // renamed and the caller hasn't yet propagated the rename), those
+    // edges would otherwise dangle and trip `pmem verify`'s
+    // orphan_edges / too_many_relations checks.
+    if (isFull) {
+        (0, db_1.deleteOrphanEdges)(db);
+    }
+    // v0.7.0-a (revised in v0.7.3, issue #6): restore edges that the
+    // rebuild loop did not and could not have re-derived. We now
+    // restrict restoration to:
+    //   - sources the rebuild loop does NOT manage (anything other than
+    //     'explicit', 'inferred', 'mention'). These are typically manual
+    //     SQL inserts that should survive a full rebuild.
+    //   - edges whose both endpoints still exist in the cards table.
+    //     Orphan edges (e.g. pointing to a deleted card) are NOT
+    //     restored, since they would just be pruned again by
+    //     `deleteOrphanEdges` and the user wants them gone.
+    // Without these filters, the snapshot+restore step would resurrect
+    // every `depends_on` / `related_to` / `next_step_of` edge that the
+    // user had just removed from a card's frontmatter — the original
+    // root cause of issue #6.
     if (isFull && snappedEdges.length > 0) {
         const restoreEdgeTx = db.transaction(() => {
+            // Build a set of currently-existing card IDs so the restore loop
+            // can skip edges whose endpoints no longer exist.
+            const existingCardIds = new Set(db.prepare("SELECT id FROM cards WHERE is_deleted = 0").all().map(r => r.id));
             // Build set of current edge keys: "from_id|to_id|type|source"
             const currentKeys = new Set();
             const currentEdges = db.prepare("SELECT from_id, to_id, type, source FROM edges").all();
             for (const e of currentEdges) {
                 currentKeys.add(`${e.from_id}|${e.to_id}|${e.type}|${e.source}`);
             }
+            // Sources managed by the rebuild loop — restoring any of these
+            // would re-introduce the very stale edges we just deleted from
+            // the loop's deleteExplicitCardEdges/deleteMentionEdges/
+            // deleteInferredCardEdges pass.
+            const managedSources = new Set(['explicit', 'inferred', 'mention']);
             const restoreStmt = db.prepare("INSERT OR IGNORE INTO edges (from_id, to_id, type, source, confidence, created_at, updated_at) VALUES (?, ?, ?, ?, ?, ?, ?)");
             let restoredCount = 0;
             const now = new Date().toISOString();
             for (const e of snappedEdges) {
+                // Skip managed sources — they should be re-derived from
+                // current frontmatter, not resurrected from the snapshot.
+                if (managedSources.has(e.source))
+                    continue;
+                // Skip orphan edges — both endpoints must still be cards.
+                if (!existingCardIds.has(e.from_id) || !existingCardIds.has(e.to_id))
+                    continue;
                 const key = `${e.from_id}|${e.to_id}|${e.type}|${e.source}`;
-                if (!currentKeys.has(key)) {
-                    restoreStmt.run(e.from_id, e.to_id, e.type, e.source, e.confidence, e.created_at ?? now, e.updated_at ?? now);
-                    restoredCount++;
-                }
+                if (currentKeys.has(key))
+                    continue;
+                restoreStmt.run(e.from_id, e.to_id, e.type, e.source, e.confidence, e.created_at ?? now, e.updated_at ?? now);
+                restoredCount++;
             }
             if (restoredCount > 0) {
                 preservedEdges = restoredCount;

package/dist/commands/rebuild.js.map

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package/dist/commands/verify.d.ts

@@ -3,5 +3,6 @@ export declare function verifyCommand(options: {
     fixLocks?: boolean;
     fixStale?: boolean;
     relaxed?: boolean;
+    noExit?: boolean;
 }): void;
 //# sourceMappingURL=verify.d.ts.map

package/dist/commands/verify.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"verify.d.ts","sourceRoot":"","sources":["../../src/commands/verify.ts"],"names":[],"mappings":"AAaA,wBAAgB,aAAa,CAAC,OAAO,EAAE;IAAE,GAAG,CAAC,EAAE,OAAO,CAAC;IAAC,QAAQ,CAAC,EAAE,OAAO,CAAC;IAAC,QAAQ,CAAC,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,IAAI,CAiYzH"}
+{"version":3,"file":"verify.d.ts","sourceRoot":"","sources":["../../src/commands/verify.ts"],"names":[],"mappings":"AAaA,wBAAgB,aAAa,CAAC,OAAO,EAAE;IAAE,GAAG,CAAC,EAAE,OAAO,CAAC;IAAC,QAAQ,CAAC,EAAE,OAAO,CAAC;IAAC,QAAQ,CAAC,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,IAAI,CAmY3I"}

package/dist/commands/verify.js

@@ -388,10 +388,13 @@ function verifyCommand(options) {
     // but if a stale lock was found and not cleaned (e.g., --fix-locks not passed),
     // we provide guidance here.
     const hasErrors = issues.some(i => i.severity === 'error');
-    const hasWarnings = issues.some(i => i.severity === 'warning');
-    // v0.6.2: warnings no longer trigger exit 1. Only errors exit non-zero.
-    if (hasErrors)
+    if (hasErrors) {
+        if (options.noExit)
+            return;
         process.exit(2);
+    }
+    if (options.noExit)
+        return;
     process.exit(0);
 }
 function updateFrontmatterTimestamp(filePath, field) {

package/dist/commands/verify.js.map

@@ -1 +1 @@
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package/dist/core/agentRules.d.ts

@@ -0,0 +1,13 @@
+interface InstallRulesOptions {
+    claude?: boolean;
+    codex?: boolean;
+    gemini?: boolean;
+    cursor?: boolean;
+    cline?: boolean;
+    aider?: boolean;
+    windsurf?: boolean;
+    all?: boolean;
+}
+export declare function writeAgentRules(cwd: string, options: InstallRulesOptions): string[];
+export {};
+//# sourceMappingURL=agentRules.d.ts.map

package/dist/core/agentRules.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"agentRules.d.ts","sourceRoot":"","sources":["../../src/core/agentRules.ts"],"names":[],"mappings":"AA0BA,UAAU,mBAAmB;IAC3B,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED,wBAAgB,eAAe,CAAC,GAAG,EAAE,MAAM,EAAE,OAAO,EAAE,mBAAmB,GAAG,MAAM,EAAE,CA4EnF"}

package/dist/core/agentRules.js

@@ -0,0 +1,131 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.writeAgentRules = writeAgentRules;
+const path = __importStar(require("path"));
+const fs_1 = require("./fs");
+const RULES_CONTENT = `<!-- pmem:rules:start -->
+# pmem Guidelines
+
+Before editing files or starting a task, run:
+\`pmem context "<task description>"\`
+
+After completing a task or editing files, run:
+\`pmem capture --auto\`
+
+Rules:
+- Do not manually edit .pmem core cards (e.g. decisions, modules) unless explicitly requested.
+- Keep capture summaries short and factual.
+- Prefer using \`pmem context\` over ad-hoc repo scanning.
+<!-- pmem:rules:end -->`;
+const CURSOR_MDC_CONTENT = `---
+description: Use pmem project memory during coding tasks
+alwaysApply: true
+---
+
+${RULES_CONTENT}`;
+function writeAgentRules(cwd, options) {
+    const installed = [];
+    const targets = [
+        { name: 'AGENTS.md', filePath: path.join(cwd, 'AGENTS.md') },
+        { name: 'CLAUDE.md', filePath: path.join(cwd, 'CLAUDE.md') },
+        { name: 'GEMINI.md', filePath: path.join(cwd, 'GEMINI.md') },
+        { name: '.codex/instructions.md', filePath: path.join(cwd, '.codex', 'instructions.md') },
+        { name: '.cursor/rules/pmem.mdc', filePath: path.join(cwd, '.cursor/rules/pmem.mdc'), isMdc: true },
+        { name: '.clinerules/pmem.md', filePath: path.join(cwd, '.clinerules/pmem.md') },
+        // Opt-ins
+        { name: 'CONVENTIONS.md (Aider)', filePath: path.join(cwd, 'CONVENTIONS.md'), optIn: true },
+        { name: '.windsurfrules', filePath: path.join(cwd, '.windsurfrules'), optIn: true }
+    ];
+    // Determine which files to write based on flags
+    const selectedTargets = targets.filter(t => {
+        // AGENTS.md is always written if we are running agentRules
+        if (t.name === 'AGENTS.md')
+            return true;
+        // Aider and Windsurf are strictly opt-in and NEVER written via --all
+        if (t.name === 'CONVENTIONS.md (Aider)')
+            return !!options.aider;
+        if (t.name === '.windsurfrules')
+            return !!options.windsurf;
+        // For all other targets, they are written if --all is passed or their specific flag is passed
+        if (options.all)
+            return true;
+        if (t.name === 'CLAUDE.md')
+            return !!options.claude;
+        if (t.name === 'GEMINI.md')
+            return !!options.gemini;
+        if (t.name === '.codex/instructions.md')
+            return !!options.codex;
+        if (t.name === '.cursor/rules/pmem.mdc')
+            return !!options.cursor;
+        if (t.name === '.clinerules/pmem.md')
+            return !!options.cline;
+        return false;
+    });
+    for (const target of selectedTargets) {
+        try {
+            const dir = path.dirname(target.filePath);
+            (0, fs_1.ensureDir)(dir);
+            const contentToWrite = target.isMdc ? CURSOR_MDC_CONTENT : RULES_CONTENT;
+            if ((0, fs_1.fileExists)(target.filePath)) {
+                const existing = (0, fs_1.readFile)(target.filePath) || '';
+                const startMarker = '<!-- pmem:rules:start -->';
+                const endMarker = '<!-- pmem:rules:end -->';
+                const startIndex = existing.indexOf(startMarker);
+                const endIndex = existing.indexOf(endMarker);
+                if (startIndex >= 0 && endIndex >= 0 && endIndex > startIndex) {
+                    const updated = existing.substring(0, startIndex) +
+                        contentToWrite +
+                        existing.substring(endIndex + endMarker.length);
+                    (0, fs_1.writeFile)(target.filePath, updated);
+                }
+                else {
+                    // Append rules at the end
+                    const spacer = existing.endsWith('\n') ? '' : '\n';
+                    (0, fs_1.writeFile)(target.filePath, `${existing}${spacer}\n${contentToWrite}\n`);
+                }
+            }
+            else {
+                (0, fs_1.writeFile)(target.filePath, contentToWrite + '\n');
+            }
+            installed.push(target.name);
+        }
+        catch (err) {
+            console.error(`Failed to write agent rules to ${target.name}: ${err.message}`);
+        }
+    }
+    return installed;
+}
+//# sourceMappingURL=agentRules.js.map

package/dist/core/agentRules.js.map

@@ -0,0 +1 @@
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package/dist/core/capture.d.ts

@@ -0,0 +1,15 @@
+export interface CaptureOptions {
+    auto?: boolean;
+    summary?: string;
+    next?: string;
+    full?: boolean;
+    force?: boolean;
+}
+export interface CaptureResult {
+    success: boolean;
+    message: string;
+    tracePath?: string;
+    skipped?: boolean;
+}
+export declare function captureCore(pmemPath: string, options?: CaptureOptions): CaptureResult;
+//# sourceMappingURL=capture.d.ts.map

package/dist/core/capture.d.ts.map

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