phenoml 5.3.0 → 6.1.0

package/dist/cjs/api/resources/construe/client/requests/UploadRequest.d.ts

@@ -0,0 +1,55 @@
+import type * as phenoml from "../../../../index.js";
+/**
+ * @example
+ *     {
+ *         name: "CUSTOM_CODES",
+ *         version: "1.0",
+ *         format: "csv"
+ *     }
+ */
+export interface UploadRequest {
+    /**
+     * Name of the code system. Names are case-insensitive and stored uppercase.
+     * Builtin system names (e.g. ICD-10-CM, SNOMED_CT_US_LITE, LOINC, CPT, etc.) are
+     * reserved and cannot be used for custom uploads; attempts return HTTP 403 Forbidden.
+     */
+    name: string;
+    /** Version of the code system */
+    version: string;
+    /** Optional revision number */
+    revision?: number;
+    /** Upload format */
+    format: UploadRequest.Format;
+    /**
+     * The file contents as a base64-encoded string.
+     * For CSV format, this is the CSV file contents.
+     * For JSON format, this is a base64-encoded JSON array; prefer using 'codes' instead.
+     */
+    file?: string;
+    /** Column name containing codes (required for CSV format) */
+    code_col?: string;
+    /** Column name containing descriptions (required for CSV format) */
+    desc_col?: string;
+    /** Optional column name containing long definitions (for CSV format) */
+    defn_col?: string;
+    /**
+     * The codes to upload as a JSON array (JSON format only).
+     * This is the preferred way to upload JSON codes, as it avoids unnecessary base64 encoding.
+     * If both 'codes' and 'file' are provided, 'codes' takes precedence.
+     */
+    codes?: phenoml.construe.CodeResponse[];
+    /**
+     * If true, replaces an existing code system with the same name and version.
+     * Builtin systems cannot be replaced; attempts to do so return HTTP 403 Forbidden.
+     * When false (default), uploading a duplicate returns 409 Conflict.
+     */
+    replace?: boolean;
+}
+export declare namespace UploadRequest {
+    /** Upload format */
+    const Format: {
+        readonly Csv: "csv";
+        readonly Json: "json";
+    };
+    type Format = (typeof Format)[keyof typeof Format];
+}

package/dist/cjs/api/resources/construe/client/requests/UploadRequest.js

@@ -0,0 +1,12 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.UploadRequest = void 0;
+var UploadRequest;
+(function (UploadRequest) {
+    /** Upload format */
+    UploadRequest.Format = {
+        Csv: "csv",
+        Json: "json",
+    };
+})(UploadRequest || (exports.UploadRequest = UploadRequest = {}));

package/dist/cjs/api/resources/construe/client/requests/index.d.ts

@@ -6,3 +6,4 @@ export type { GetConstrueCodesCodesystemSearchSemanticRequest } from "./GetConst
 export type { GetConstrueCodesCodesystemSearchTextRequest } from "./GetConstrueCodesCodesystemSearchTextRequest.js";
 export type { GetConstrueCodesSystemsCodesystemExportRequest } from "./GetConstrueCodesSystemsCodesystemExportRequest.js";
 export type { GetConstrueCodesSystemsCodesystemRequest } from "./GetConstrueCodesSystemsCodesystemRequest.js";
+export type { UploadRequest } from "./UploadRequest.js";

package/dist/cjs/api/resources/construe/errors/GatewayTimeoutError.d.ts

@@ -0,0 +1,5 @@
+import type * as core from "../../../../core/index.js";
+import * as errors from "../../../../errors/index.js";
+export declare class GatewayTimeoutError extends errors.phenomlError {
+    constructor(body?: unknown, rawResponse?: core.RawResponse);
+}

package/dist/cjs/api/resources/construe/errors/GatewayTimeoutError.js

@@ -0,0 +1,50 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.GatewayTimeoutError = void 0;
+const errors = __importStar(require("../../../../errors/index.js"));
+class GatewayTimeoutError extends errors.phenomlError {
+    constructor(body, rawResponse) {
+        super({
+            message: "GatewayTimeoutError",
+            statusCode: 504,
+            body: body,
+            rawResponse: rawResponse,
+        });
+        Object.setPrototypeOf(this, GatewayTimeoutError.prototype);
+    }
+}
+exports.GatewayTimeoutError = GatewayTimeoutError;

package/dist/cjs/api/resources/construe/errors/index.d.ts

@@ -2,6 +2,7 @@ export * from "./BadRequestError.js";
 export * from "./ConflictError.js";
 export * from "./FailedDependencyError.js";
 export * from "./ForbiddenError.js";
+export * from "./GatewayTimeoutError.js";
 export * from "./InternalServerError.js";
 export * from "./NotFoundError.js";
 export * from "./NotImplementedError.js";

package/dist/cjs/api/resources/construe/errors/index.js

@@ -18,6 +18,7 @@ __exportStar(require("./BadRequestError.js"), exports);
 __exportStar(require("./ConflictError.js"), exports);
 __exportStar(require("./FailedDependencyError.js"), exports);
 __exportStar(require("./ForbiddenError.js"), exports);
+__exportStar(require("./GatewayTimeoutError.js"), exports);
 __exportStar(require("./InternalServerError.js"), exports);
 __exportStar(require("./NotFoundError.js"), exports);
 __exportStar(require("./NotImplementedError.js"), exports);

package/dist/cjs/api/resources/construe/types/ConstrueUploadCodeSystemResponse.d.ts

@@ -1,3 +1,5 @@
 export interface ConstrueUploadCodeSystemResponse {
     status?: string;
+    name?: string;
+    version?: string;
 }

package/dist/cjs/api/resources/construe/types/ExtractedCodeResult.d.ts

@@ -6,10 +6,8 @@ export interface ExtractedCodeResult {
     description: string;
     /** Whether the code passed validation. Always true unless include_invalid is set to true, in which case invalid codes will have this set to false. */
     valid: boolean;
-    /** Long description of the code */
-    longDescription?: string;
     /** Explanation for why this code was extracted (if include_rationale is true) */
-    rationale?: string;
+    reason?: string;
     /**
      * Whether this code is an ancestor (parent) of an extracted code rather than directly extracted.
      * Only present when include_ancestors is true.

package/dist/cjs/api/resources/construe/types/GetCodeSystemDetailResponse.d.ts

@@ -9,9 +9,9 @@ export interface GetCodeSystemDetailResponse {
     builtin: boolean;
     /**
      * Processing status of the code system.
-     * - "processing": embeddings are being generated (async upload in progress)
+     * - "processing": embeddings are being generated
      * - "ready": code system is ready for use
-     * - "failed": async processing failed (re-upload with replace=true to retry)
+     * - "failed": processing failed (re-upload with replace=true to retry)
      */
     status: GetCodeSystemDetailResponse.Status;
     /** When the code system was created */
@@ -22,9 +22,9 @@ export interface GetCodeSystemDetailResponse {
 export declare namespace GetCodeSystemDetailResponse {
     /**
      * Processing status of the code system.
-     * - "processing": embeddings are being generated (async upload in progress)
+     * - "processing": embeddings are being generated
      * - "ready": code system is ready for use
-     * - "failed": async processing failed (re-upload with replace=true to retry)
+     * - "failed": processing failed (re-upload with replace=true to retry)
      */
     const Status: {
         readonly Processing: "processing";

package/dist/cjs/api/resources/construe/types/GetCodeSystemDetailResponse.js

@@ -6,9 +6,9 @@ var GetCodeSystemDetailResponse;
 (function (GetCodeSystemDetailResponse) {
     /**
      * Processing status of the code system.
-     * - "processing": embeddings are being generated (async upload in progress)
+     * - "processing": embeddings are being generated
      * - "ready": code system is ready for use
-     * - "failed": async processing failed (re-upload with replace=true to retry)
+     * - "failed": processing failed (re-upload with replace=true to retry)
      */
     GetCodeSystemDetailResponse.Status = {
         Processing: "processing",

package/dist/cjs/api/resources/construe/types/index.d.ts

@@ -17,6 +17,3 @@ export * from "./SemanticSearchResponse.js";
 export * from "./SemanticSearchResult.js";
 export * from "./TextSearchResponse.js";
 export * from "./TextSearchResult.js";
-export * from "./UploadRequest.js";
-export * from "./UploadRequestCsv.js";
-export * from "./UploadRequestJson.js";

package/dist/cjs/api/resources/construe/types/index.js

@@ -33,6 +33,3 @@ __exportStar(require("./SemanticSearchResponse.js"), exports);
 __exportStar(require("./SemanticSearchResult.js"), exports);
 __exportStar(require("./TextSearchResponse.js"), exports);
 __exportStar(require("./TextSearchResult.js"), exports);
-__exportStar(require("./UploadRequest.js"), exports);
-__exportStar(require("./UploadRequestCsv.js"), exports);
-__exportStar(require("./UploadRequestJson.js"), exports);

package/dist/cjs/api/resources/fhir/client/Client.js

@@ -87,7 +87,7 @@ class Fhir {
     }
     __search(fhirProviderId_1, fhirPath_1) {
         return __awaiter(this, arguments, void 0, function* (fhirProviderId, fhirPath, request = {}, requestOptions) {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { query_parameters: queryParameters, "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider, } = request;
             const _queryParams = {};
             if (queryParameters != null) {
@@ -106,6 +106,7 @@ class Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -192,7 +193,7 @@ class Fhir {
     }
     __create(fhirProviderId, fhirPath, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider, body: _body, } = request;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -210,6 +211,7 @@ class Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -296,7 +298,7 @@ class Fhir {
     }
     __upsert(fhirProviderId, fhirPath, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider, body: _body, } = request;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -314,6 +316,7 @@ class Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -386,7 +389,7 @@ class Fhir {
     }
     __delete(fhirProviderId_1, fhirPath_1) {
         return __awaiter(this, arguments, void 0, function* (fhirProviderId, fhirPath, request = {}, requestOptions) {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider } = request;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -401,6 +404,7 @@ class Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -536,7 +540,7 @@ class Fhir {
     }
     __patch(fhirProviderId, fhirPath, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider, body: _body, } = request;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -554,6 +558,7 @@ class Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -656,7 +661,7 @@ class Fhir {
     }
     __executeBundle(fhirProviderId, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider, body: _body, } = request;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -674,6 +679,7 @@ class Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };

package/dist/cjs/api/resources/fhirProvider/client/Client.js

@@ -79,7 +79,7 @@ class FhirProvider {
     }
     __create(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "fhir-provider"),
@@ -92,6 +92,7 @@ class FhirProvider {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -153,7 +154,7 @@ class FhirProvider {
     }
     __list(requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "fhir-provider/list"),
@@ -163,6 +164,7 @@ class FhirProvider {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -222,7 +224,7 @@ class FhirProvider {
     }
     __get(fhirProviderId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `fhir-provider/${core.url.encodePathParam(fhirProviderId)}`),
@@ -232,6 +234,7 @@ class FhirProvider {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -293,7 +296,7 @@ class FhirProvider {
     }
     __delete(fhirProviderId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `fhir-provider/${core.url.encodePathParam(fhirProviderId)}`),
@@ -303,6 +306,7 @@ class FhirProvider {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -371,7 +375,7 @@ class FhirProvider {
     }
     __addAuthConfig(fhirProviderId, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `fhir-provider/${core.url.encodePathParam(fhirProviderId)}/add-auth-config`),
@@ -384,6 +388,7 @@ class FhirProvider {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -457,7 +462,7 @@ class FhirProvider {
     }
     __setActiveAuthConfig(fhirProviderId, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `fhir-provider/${core.url.encodePathParam(fhirProviderId)}/set-active-auth-config`),
@@ -470,6 +475,7 @@ class FhirProvider {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -540,7 +546,7 @@ class FhirProvider {
     }
     __removeAuthConfig(fhirProviderId, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `fhir-provider/${core.url.encodePathParam(fhirProviderId)}/remove-auth-config`),
@@ -553,6 +559,7 @@ class FhirProvider {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {

package/dist/cjs/api/resources/fhirProvider/types/FhirProviderTemplate.d.ts

@@ -2,8 +2,6 @@ import type * as phenoml from "../../../index.js";
 export interface FhirProviderTemplate {
     /** Unique identifier for the FHIR provider */
     id?: string;
-    /** ID of the user who owns this FHIR provider */
-    user_id?: string;
     /** Display name for the FHIR provider */
     name?: string;
     /** Optional description of the FHIR provider */

package/dist/cjs/api/resources/lang2Fhir/client/Client.js

@@ -75,7 +75,7 @@ class Lang2Fhir {
     }
     __create(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/create"),
@@ -88,6 +88,7 @@ class Lang2Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -147,7 +148,7 @@ class Lang2Fhir {
     }
     __createMulti(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/create/multi"),
@@ -160,6 +161,7 @@ class Lang2Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -228,7 +230,7 @@ class Lang2Fhir {
     }
     __search(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/search"),
@@ -241,6 +243,7 @@ class Lang2Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -310,7 +313,7 @@ class Lang2Fhir {
     }
     __uploadProfile(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/profile/upload"),
@@ -323,6 +326,7 @@ class Lang2Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -387,7 +391,7 @@ class Lang2Fhir {
     }
     __document(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/document"),
@@ -400,6 +404,7 @@ class Lang2Fhir {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };