phenoml 5.3.0 → 6.1.0

package/dist/esm/api/resources/tools/client/Client.mjs

@@ -58,7 +58,7 @@ export class Tools {
     }
     __createFhirResource(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider } = request, _body = __rest(request, ["X-Phenoml-On-Behalf-Of", "X-Phenoml-Fhir-Provider"]);
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -76,6 +76,7 @@ export class Tools {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -149,7 +150,7 @@ export class Tools {
     }
     __createFhirResourcesMulti(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider } = request, _body = __rest(request, ["X-Phenoml-On-Behalf-Of", "X-Phenoml-Fhir-Provider"]);
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -167,6 +168,7 @@ export class Tools {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -235,7 +237,7 @@ export class Tools {
     }
     __searchFhirResources(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider } = request, _body = __rest(request, ["X-Phenoml-On-Behalf-Of", "X-Phenoml-Fhir-Provider"]);
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -253,6 +255,7 @@ export class Tools {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -321,7 +324,7 @@ export class Tools {
     }
     __analyzeCohort(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider } = request, _body = __rest(request, ["X-Phenoml-On-Behalf-Of", "X-Phenoml-Fhir-Provider"]);
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({
                 Authorization: yield this._getAuthorizationHeader(),
@@ -339,6 +342,7 @@ export class Tools {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };

package/dist/esm/api/resources/tools/resources/mcpServer/client/Client.mjs

@@ -44,7 +44,7 @@ export class McpServer {
     }
     __create(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "tools/mcp-server/create"),
@@ -57,6 +57,7 @@ export class McpServer {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -113,7 +114,7 @@ export class McpServer {
     }
     __list(requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "tools/mcp-server/list"),
@@ -123,6 +124,7 @@ export class McpServer {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -178,7 +180,7 @@ export class McpServer {
     }
     __get(mcpServerId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcpServerId)}`),
@@ -188,6 +190,7 @@ export class McpServer {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -243,7 +246,7 @@ export class McpServer {
     }
     __delete(mcpServerId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcpServerId)}`),
@@ -253,6 +256,7 @@ export class McpServer {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };

package/dist/esm/api/resources/tools/resources/mcpServer/resources/tools/client/Client.mjs

@@ -35,7 +35,7 @@ export class Tools {
     }
     __list(mcpServerId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcpServerId)}/list`),
@@ -45,6 +45,7 @@ export class Tools {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -100,7 +101,7 @@ export class Tools {
     }
     __get(mcpServerToolId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}`),
@@ -110,6 +111,7 @@ export class Tools {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -165,7 +167,7 @@ export class Tools {
     }
     __delete(mcpServerToolId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}`),
@@ -175,6 +177,7 @@ export class Tools {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return { data: _response.body, rawResponse: _response.rawResponse };
@@ -236,7 +239,7 @@ export class Tools {
     }
     __call(mcpServerToolId, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}/call`),
@@ -249,6 +252,7 @@ export class Tools {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {

package/dist/esm/api/resources/tools/types/McpServerResponse.d.mts

@@ -13,8 +13,6 @@ export declare namespace McpServerResponse {
     interface Data {
         /** ID of the MCP server */
         id?: string;
-        /** ID of the user who created the MCP server */
-        user_id?: string;
         /** Name of the MCP server */
         name?: string;
         /** Description of the MCP server */

package/dist/esm/api/resources/tools/types/McpServerToolResponse.d.mts

@@ -13,8 +13,6 @@ export declare namespace McpServerToolResponse {
     interface Data {
         /** ID of the MCP server tool */
         id?: string;
-        /** ID of the user who created the MCP server tool */
-        user_id?: string;
         /** Name of the MCP server tool */
         name?: string;
         /** Description of the MCP server tool */

package/dist/esm/api/resources/workflows/client/Client.mjs

@@ -48,7 +48,7 @@ export class Workflows {
     }
     __list() {
         return __awaiter(this, arguments, void 0, function* (request = {}, requestOptions) {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { verbose } = request;
             const _queryParams = {};
             if (verbose != null) {
@@ -63,6 +63,7 @@ export class Workflows {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -132,7 +133,7 @@ export class Workflows {
     }
     __create(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { verbose } = request, _body = __rest(request, ["verbose"]);
             const _queryParams = {};
             if (verbose != null) {
@@ -150,6 +151,7 @@ export class Workflows {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -214,7 +216,7 @@ export class Workflows {
     }
     __get(id_1) {
         return __awaiter(this, arguments, void 0, function* (id, request = {}, requestOptions) {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { verbose } = request;
             const _queryParams = {};
             if (verbose != null) {
@@ -229,6 +231,7 @@ export class Workflows {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -302,7 +305,7 @@ export class Workflows {
     }
     __update(id, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const { verbose } = request, _body = __rest(request, ["verbose"]);
             const _queryParams = {};
             if (verbose != null) {
@@ -320,6 +323,7 @@ export class Workflows {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -383,7 +387,7 @@ export class Workflows {
     }
     __delete(id, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `workflows/${core.url.encodePathParam(id)}`),
@@ -393,6 +397,7 @@ export class Workflows {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {
@@ -463,7 +468,7 @@ export class Workflows {
     }
     __execute(id, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
             const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `workflows/${core.url.encodePathParam(id)}/execute`),
@@ -476,6 +481,7 @@ export class Workflows {
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
             });
             if (_response.ok) {
                 return {

package/dist/esm/api/resources/workflows/types/WorkflowDefinition.d.mts

@@ -2,8 +2,6 @@ import type * as phenoml from "../../../index.mjs";
 export interface WorkflowDefinition {
     /** Unique identifier for the workflow */
     id?: string;
-    /** ID of the user who created the workflow */
-    user_id?: string;
     /** Human-readable name for the workflow */
     name?: string;
     /** Natural language instructions that define the workflow logic */

package/dist/esm/api/resources/workflows/types/WorkflowResponse.d.mts

@@ -5,8 +5,6 @@ import type * as phenoml from "../../../index.mjs";
 export interface WorkflowResponse {
     /** Unique identifier for the workflow */
     id?: string;
-    /** ID of the user who created the workflow */
-    user_id?: string;
     /** Human-readable name for the workflow */
     name?: string;
     /** Natural language instructions that define the workflow logic */

package/dist/esm/core/fetcher/Fetcher.d.mts

@@ -14,10 +14,11 @@ export declare namespace Fetcher {
         maxRetries?: number;
         withCredentials?: boolean;
         abortSignal?: AbortSignal;
-        requestType?: "json" | "file" | "bytes";
+        requestType?: "json" | "file" | "bytes" | "form" | "other";
         responseType?: "json" | "blob" | "sse" | "streaming" | "text" | "arrayBuffer" | "binary-response";
         duplex?: "half";
         endpointMetadata?: EndpointMetadata;
+        fetchFn?: typeof fetch;
     }
     type Error = FailedStatusCodeError | NonJsonError | TimeoutError | UnknownError;
     interface FailedStatusCodeError {

package/dist/esm/core/fetcher/Fetcher.mjs

@@ -43,13 +43,13 @@ function getHeaders(args) {
 }
 export function fetcherImpl(args) {
     return __awaiter(this, void 0, void 0, function* () {
-        var _a;
+        var _a, _b, _c;
         const url = createRequestUrl(args.url, args.queryParameters);
         const requestBody = yield getRequestBody({
             body: args.body,
-            type: args.requestType === "json" ? "json" : "other",
+            type: (_a = args.requestType) !== null && _a !== void 0 ? _a : "other",
         });
-        const fetchFn = yield getFetchFn();
+        const fetchFn = (_b = args.fetchFn) !== null && _b !== void 0 ? _b : (yield getFetchFn());
         try {
             const response = yield requestWithRetries(() => __awaiter(this, void 0, void 0, function* () {
                 return makeRequest(fetchFn, url, args.method, yield getHeaders(args), requestBody, args.timeoutMs, args.abortSignal, args.withCredentials, args.duplex);
@@ -75,7 +75,7 @@ export function fetcherImpl(args) {
             }
         }
         catch (error) {
-            if ((_a = args.abortSignal) === null || _a === void 0 ? void 0 : _a.aborted) {
+            if ((_c = args.abortSignal) === null || _c === void 0 ? void 0 : _c.aborted) {
                 return {
                     ok: false,
                     error: {

package/dist/esm/core/fetcher/getRequestBody.d.mts

@@ -1,7 +1,7 @@
 export declare namespace GetRequestBody {
     interface Args {
         body: unknown;
-        type: "json" | "file" | "bytes" | "other";
+        type: "json" | "file" | "bytes" | "form" | "other";
     }
 }
 export declare function getRequestBody({ body, type }: GetRequestBody.Args): Promise<BodyInit | undefined>;

package/dist/esm/core/fetcher/getRequestBody.mjs

@@ -8,8 +8,12 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
     });
 };
 import { toJson } from "../json.mjs";
+import { toQueryString } from "../url/qs.mjs";
 export function getRequestBody(_a) {
     return __awaiter(this, arguments, void 0, function* ({ body, type }) {
+        if (type === "form") {
+            return toQueryString(body, { arrayFormat: "repeat", encode: true });
+        }
         if (type.includes("json")) {
             return toJson(body);
         }

package/dist/esm/core/headers.mjs

@@ -3,11 +3,12 @@ export function mergeHeaders(...headersArray) {
     for (const [key, value] of headersArray
         .filter((headers) => headers != null)
         .flatMap((headers) => Object.entries(headers))) {
+        const insensitiveKey = key.toLowerCase();
         if (value != null) {
-            result[key] = value;
+            result[insensitiveKey] = value;
         }
-        else if (key in result) {
-            delete result[key];
+        else if (insensitiveKey in result) {
+            delete result[insensitiveKey];
         }
     }
     return result;
@@ -17,8 +18,9 @@ export function mergeOnlyDefinedHeaders(...headersArray) {
     for (const [key, value] of headersArray
         .filter((headers) => headers != null)
         .flatMap((headers) => Object.entries(headers))) {
+        const insensitiveKey = key.toLowerCase();
         if (value != null) {
-            result[key] = value;
+            result[insensitiveKey] = value;
         }
     }
     return result;

package/dist/esm/version.d.mts

@@ -1 +1 @@
-export declare const SDK_VERSION = "5.3.0";
+export declare const SDK_VERSION = "6.1.0";

package/dist/esm/version.mjs

@@ -1 +1 @@
-export const SDK_VERSION = "5.3.0";
+export const SDK_VERSION = "6.1.0";

package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "phenoml",
-    "version": "5.3.0",
+    "version": "6.1.0",
     "private": false,
     "repository": "github:PhenoML/phenoml-ts-sdk",
     "type": "commonjs",
@@ -57,7 +57,7 @@
         "path": false,
         "stream": false
     },
-    "packageManager": "pnpm@10.14.0",
+    "packageManager": "pnpm@10.20.0",
     "engines": {
         "node": ">=18.0.0"
     },

package/reference.md

@@ -1154,8 +1154,9 @@ await client.cohort.analyze({
 <dd>
 
 Upload a custom medical code system with codes and descriptions for use in code extraction. Requires a paid plan.
-Upon upload, construe generates embeddings for all of the codes in the code system and stores them in the vector database so you can
-subsequently use the code system for construe/extract and lang2fhir/create (coming soon!)
+Returns 202 immediately; embedding generation runs asynchronously. Poll
+GET /construe/codes/systems/{codesystem}?version={version} to check when status
+transitions from "processing" to "ready" or "failed".
 </dd>
 </dl>
 </dd>
@@ -1171,12 +1172,9 @@ subsequently use the code system for construe/extract and lang2fhir/create (comi
 
 ```typescript
 await client.construe.uploadCodeSystem({
-    format: "csv",
     name: "CUSTOM_CODES",
     version: "1.0",
-    file: "file",
-    code_col: "code",
-    desc_col: "description"
+    format: "csv"
 });
 
 ```
@@ -1193,7 +1191,7 @@ await client.construe.uploadCodeSystem({
 <dl>
 <dd>
 
-**request:** `phenoml.UploadRequest` 
+**request:** `phenoml.construe.UploadRequest` 
     
 </dd>
 </dl>
@@ -2219,7 +2217,7 @@ Examples:
 </dl>
 </details>
 
-<details><summary><code>client.fhir.<a href="/src/api/resources/fhir/client/Client.ts">delete</a>(fhirProviderId, fhirPath, { ...params }) -> Record&lt;string, unknown&gt;</code></summary>
+<details><summary><code>client.fhir.<a href="/src/api/resources/fhir/client/Client.ts">delete</a>(fhirProviderId, fhirPath, { ...params }) -> Record<string, unknown></code></summary>
 <dl>
 <dd>
 

package/dist/cjs/api/resources/construe/types/UploadRequest.d.ts

@@ -1,10 +0,0 @@
-import type * as phenoml from "../../../index.js";
-export type UploadRequest = phenoml.construe.UploadRequest.Csv | phenoml.construe.UploadRequest.Json;
-export declare namespace UploadRequest {
-    interface Csv extends phenoml.construe.UploadRequestCsv {
-        format: "csv";
-    }
-    interface Json extends phenoml.construe.UploadRequestJson {
-        format: "json";
-    }
-}

package/dist/cjs/api/resources/construe/types/UploadRequest.js

@@ -1,3 +0,0 @@
-"use strict";
-// This file was auto-generated by Fern from our API Definition.
-Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/UploadRequestCsv.d.ts

@@ -1,32 +0,0 @@
-export interface UploadRequestCsv {
-    /**
-     * Name of the code system. Names are case-insensitive and stored uppercase.
-     * Builtin system names (e.g. ICD-10-CM, SNOMED_CT_US_LITE, LOINC, CPT, etc.) are
-     * reserved and cannot be used for custom uploads; attempts return HTTP 403 Forbidden.
-     */
-    name: string;
-    /** Version of the code system */
-    version: string;
-    /** Optional revision number */
-    revision?: number;
-    /** The CSV file contents as a base64-encoded string. */
-    file: string;
-    /** Column name containing codes */
-    code_col: string;
-    /** Column name containing descriptions */
-    desc_col: string;
-    /** Optional column name containing long definitions */
-    defn_col?: string;
-    /**
-     * If true, replaces an existing code system with the same name and version.
-     * Builtin systems cannot be replaced; attempts to do so return HTTP 403 Forbidden.
-     * When false (default), uploading a duplicate returns 409 Conflict.
-     */
-    replace?: boolean;
-    /**
-     * If true, returns 202 Accepted immediately after validation and starts processing
-     * in the background. Poll GET /construe/codes/systems/{name}?version={version} to
-     * check when status transitions from "processing" to "ready" or "failed".
-     */
-    async?: boolean;
-}

package/dist/cjs/api/resources/construe/types/UploadRequestCsv.js

@@ -1,3 +0,0 @@
-"use strict";
-// This file was auto-generated by Fern from our API Definition.
-Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/UploadRequestJson.d.ts

@@ -1,40 +0,0 @@
-import type * as phenoml from "../../../index.js";
-/**
- * Upload codes in JSON format. Either 'file' or 'codes' must be provided.
- * If both are provided, 'codes' takes precedence.
- */
-export interface UploadRequestJson {
-    /**
-     * Name of the code system. Names are case-insensitive and stored uppercase.
-     * Builtin system names (e.g. ICD-10-CM, SNOMED_CT_US_LITE, LOINC, CPT, etc.) are
-     * reserved and cannot be used for custom uploads; attempts return HTTP 403 Forbidden.
-     */
-    name: string;
-    /** Version of the code system */
-    version: string;
-    /** Optional revision number */
-    revision?: number;
-    /**
-     * The file contents as a base64-encoded JSON array string.
-     * Prefer using 'codes' instead to pass the array directly without base64 encoding.
-     */
-    file?: string;
-    /**
-     * The codes to upload as a JSON array.
-     * This is the preferred way to upload JSON codes, as it avoids unnecessary base64 encoding.
-     * If both 'codes' and 'file' are provided, 'codes' takes precedence.
-     */
-    codes?: phenoml.construe.CodeResponse[];
-    /**
-     * If true, replaces an existing code system with the same name and version.
-     * Builtin systems cannot be replaced; attempts to do so return HTTP 403 Forbidden.
-     * When false (default), uploading a duplicate returns 409 Conflict.
-     */
-    replace?: boolean;
-    /**
-     * If true, returns 202 Accepted immediately after validation and starts processing
-     * in the background. Poll GET /construe/codes/systems/{name}?version={version} to
-     * check when status transitions from "processing" to "ready" or "failed".
-     */
-    async?: boolean;
-}

package/dist/cjs/api/resources/construe/types/UploadRequestJson.js

@@ -1,3 +0,0 @@
-"use strict";
-// This file was auto-generated by Fern from our API Definition.
-Object.defineProperty(exports, "__esModule", { value: true });

package/dist/esm/api/resources/construe/types/UploadRequest.d.mts

@@ -1,10 +0,0 @@
-import type * as phenoml from "../../../index.mjs";
-export type UploadRequest = phenoml.construe.UploadRequest.Csv | phenoml.construe.UploadRequest.Json;
-export declare namespace UploadRequest {
-    interface Csv extends phenoml.construe.UploadRequestCsv {
-        format: "csv";
-    }
-    interface Json extends phenoml.construe.UploadRequestJson {
-        format: "json";
-    }
-}