phenoml 0.0.6 → 0.0.8

package/dist/cjs/api/resources/index.d.ts

@@ -5,5 +5,6 @@ export * as construe from "./construe/index.js";
 export * as fhir from "./fhir/index.js";
 export * as fhirProvider from "./fhirProvider/index.js";
 export * as lang2Fhir from "./lang2Fhir/index.js";
+export * as summary from "./summary/index.js";
 export * as tools from "./tools/index.js";
 export * as workflows from "./workflows/index.js";

package/dist/cjs/api/resources/index.js

@@ -33,7 +33,7 @@ var __importStar = (this && this.__importStar) || (function () {
     };
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.workflows = exports.tools = exports.lang2Fhir = exports.fhirProvider = exports.fhir = exports.construe = exports.cohort = exports.authtoken = exports.agent = void 0;
+exports.workflows = exports.tools = exports.summary = exports.lang2Fhir = exports.fhirProvider = exports.fhir = exports.construe = exports.cohort = exports.authtoken = exports.agent = void 0;
 exports.agent = __importStar(require("./agent/index.js"));
 exports.authtoken = __importStar(require("./authtoken/index.js"));
 exports.cohort = __importStar(require("./cohort/index.js"));
@@ -41,5 +41,6 @@ exports.construe = __importStar(require("./construe/index.js"));
 exports.fhir = __importStar(require("./fhir/index.js"));
 exports.fhirProvider = __importStar(require("./fhirProvider/index.js"));
 exports.lang2Fhir = __importStar(require("./lang2Fhir/index.js"));
+exports.summary = __importStar(require("./summary/index.js"));
 exports.tools = __importStar(require("./tools/index.js"));
 exports.workflows = __importStar(require("./workflows/index.js"));

package/dist/cjs/api/resources/lang2Fhir/client/Client.d.ts

@@ -9,7 +9,7 @@ export declare namespace Lang2Fhir {
 }
 export declare class Lang2Fhir {
     protected readonly _options: Lang2Fhir.Options;
-    constructor(_options?: Lang2Fhir.Options);
+    constructor(_options: Lang2Fhir.Options);
     /**
      * Converts natural language text into a structured FHIR resource
      *
@@ -87,5 +87,5 @@ export declare class Lang2Fhir {
      */
     document(request: phenoml.lang2Fhir.DocumentRequest, requestOptions?: Lang2Fhir.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.FhirResource>;
     private __document;
-    protected _getAuthorizationHeader(): Promise<string | undefined>;
+    protected _getAuthorizationHeader(): Promise<string>;
 }

package/dist/cjs/api/resources/lang2Fhir/client/Client.js

@@ -44,13 +44,13 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Lang2Fhir = void 0;
-const environments = __importStar(require("../../../../environments.js"));
-const core = __importStar(require("../../../../core/index.js"));
-const phenoml = __importStar(require("../../../index.js"));
 const headers_js_1 = require("../../../../core/headers.js");
+const core = __importStar(require("../../../../core/index.js"));
+const environments = __importStar(require("../../../../environments.js"));
 const errors = __importStar(require("../../../../errors/index.js"));
+const phenoml = __importStar(require("../../../index.js"));
 class Lang2Fhir {
-    constructor(_options = {}) {
+    constructor(_options) {
         this._options = _options;
     }
     /**
@@ -76,7 +76,7 @@ class Lang2Fhir {
     __create(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/create"),
                 method: "POST",
@@ -147,7 +147,7 @@ class Lang2Fhir {
     __search(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/search"),
                 method: "POST",
@@ -222,7 +222,7 @@ class Lang2Fhir {
     __uploadProfile(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/profile/upload"),
                 method: "POST",
@@ -300,7 +300,7 @@ class Lang2Fhir {
     __document(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "lang2fhir/document"),
                 method: "POST",
@@ -351,11 +351,7 @@ class Lang2Fhir {
     }
     _getAuthorizationHeader() {
         return __awaiter(this, void 0, void 0, function* () {
-            const bearer = yield core.Supplier.get(this._options.token);
-            if (bearer != null) {
-                return `Bearer ${bearer}`;
-            }
-            return undefined;
+            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
         });
     }
 }

package/dist/cjs/api/resources/lang2Fhir/client/index.d.ts

@@ -1,2 +1 @@
-export {};
 export * from "./requests/index.js";

package/dist/cjs/api/resources/lang2Fhir/client/requests/index.d.ts

@@ -1,4 +1,4 @@
-export { type CreateRequest } from "./CreateRequest.js";
-export { type SearchRequest } from "./SearchRequest.js";
-export { type ProfileUploadRequest } from "./ProfileUploadRequest.js";
-export { type DocumentRequest } from "./DocumentRequest.js";
+export type { CreateRequest } from "./CreateRequest.js";
+export type { DocumentRequest } from "./DocumentRequest.js";
+export type { ProfileUploadRequest } from "./ProfileUploadRequest.js";
+export type { SearchRequest } from "./SearchRequest.js";

package/dist/cjs/api/resources/lang2Fhir/errors/BadRequestError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class BadRequestError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/lang2Fhir/errors/FailedDependencyError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class FailedDependencyError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/lang2Fhir/errors/ForbiddenError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class ForbiddenError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/lang2Fhir/errors/InternalServerError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class InternalServerError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/lang2Fhir/errors/UnauthorizedError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class UnauthorizedError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/lang2Fhir/errors/index.d.ts

@@ -1,5 +1,5 @@
 export * from "./BadRequestError.js";
-export * from "./UnauthorizedError.js";
-export * from "./InternalServerError.js";
 export * from "./FailedDependencyError.js";
 export * from "./ForbiddenError.js";
+export * from "./InternalServerError.js";
+export * from "./UnauthorizedError.js";

package/dist/cjs/api/resources/lang2Fhir/errors/index.js

@@ -15,7 +15,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 __exportStar(require("./BadRequestError.js"), exports);
-__exportStar(require("./UnauthorizedError.js"), exports);
-__exportStar(require("./InternalServerError.js"), exports);
 __exportStar(require("./FailedDependencyError.js"), exports);
 __exportStar(require("./ForbiddenError.js"), exports);
+__exportStar(require("./InternalServerError.js"), exports);
+__exportStar(require("./UnauthorizedError.js"), exports);

package/dist/cjs/api/resources/lang2Fhir/index.d.ts

@@ -1,3 +1,3 @@
-export * from "./types/index.js";
-export * from "./errors/index.js";
 export * from "./client/index.js";
+export * from "./errors/index.js";
+export * from "./types/index.js";

package/dist/cjs/api/resources/lang2Fhir/index.js

@@ -14,6 +14,6 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-__exportStar(require("./types/index.js"), exports);
-__exportStar(require("./errors/index.js"), exports);
 __exportStar(require("./client/index.js"), exports);
+__exportStar(require("./errors/index.js"), exports);
+__exportStar(require("./types/index.js"), exports);

package/dist/cjs/api/resources/lang2Fhir/types/index.d.ts

@@ -1,3 +1,3 @@
+export * from "./FhirResource.js";
 export * from "./Lang2FhirUploadProfileResponse.js";
 export * from "./SearchResponse.js";
-export * from "./FhirResource.js";

package/dist/cjs/api/resources/lang2Fhir/types/index.js

@@ -14,6 +14,6 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./FhirResource.js"), exports);
 __exportStar(require("./Lang2FhirUploadProfileResponse.js"), exports);
 __exportStar(require("./SearchResponse.js"), exports);
-__exportStar(require("./FhirResource.js"), exports);

package/dist/cjs/api/resources/summary/client/Client.d.ts

@@ -0,0 +1,125 @@
+import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.js";
+import * as core from "../../../../core/index.js";
+import * as phenoml from "../../../index.js";
+export declare namespace Summary {
+    interface Options extends BaseClientOptions {
+    }
+    interface RequestOptions extends BaseRequestOptions {
+    }
+}
+export declare class Summary {
+    protected readonly _options: Summary.Options;
+    constructor(_options: Summary.Options);
+    /**
+     * Retrieves all summary templates for the authenticated user
+     *
+     * @param {Summary.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.summary.UnauthorizedError}
+     * @throws {@link phenoml.summary.InternalServerError}
+     *
+     * @example
+     *     await client.summary.listTemplates()
+     */
+    listTemplates(requestOptions?: Summary.RequestOptions): core.HttpResponsePromise<phenoml.summary.SummaryListTemplatesResponse>;
+    private __listTemplates;
+    /**
+     * Creates a summary template from an example using LLM function calling
+     *
+     * @param {phenoml.summary.CreateSummaryTemplateRequest} request
+     * @param {Summary.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.summary.BadRequestError}
+     * @throws {@link phenoml.summary.UnauthorizedError}
+     * @throws {@link phenoml.summary.InternalServerError}
+     *
+     * @example
+     *     await client.summary.createTemplate({
+     *         name: "name",
+     *         example_summary: "Patient John Doe, age 45, presents with hypertension diagnosed on 2024-01-15.",
+     *         target_resources: ["Patient", "Condition", "Observation"],
+     *         mode: "mode"
+     *     })
+     */
+    createTemplate(request: phenoml.summary.CreateSummaryTemplateRequest, requestOptions?: Summary.RequestOptions): core.HttpResponsePromise<phenoml.summary.CreateSummaryTemplateResponse>;
+    private __createTemplate;
+    /**
+     * Retrieves a specific summary template
+     *
+     * @param {string} id - Template ID
+     * @param {Summary.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.summary.UnauthorizedError}
+     * @throws {@link phenoml.summary.ForbiddenError}
+     * @throws {@link phenoml.summary.NotFoundError}
+     * @throws {@link phenoml.summary.InternalServerError}
+     *
+     * @example
+     *     await client.summary.getTemplate("id")
+     */
+    getTemplate(id: string, requestOptions?: Summary.RequestOptions): core.HttpResponsePromise<phenoml.summary.SummaryGetTemplateResponse>;
+    private __getTemplate;
+    /**
+     * Updates an existing summary template
+     *
+     * @param {string} id - Template ID
+     * @param {phenoml.summary.UpdateSummaryTemplateRequest} request
+     * @param {Summary.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.summary.BadRequestError}
+     * @throws {@link phenoml.summary.UnauthorizedError}
+     * @throws {@link phenoml.summary.ForbiddenError}
+     * @throws {@link phenoml.summary.NotFoundError}
+     * @throws {@link phenoml.summary.InternalServerError}
+     *
+     * @example
+     *     await client.summary.updateTemplate("id", {
+     *         name: "name",
+     *         template: "template",
+     *         target_resources: ["target_resources"],
+     *         mode: "mode"
+     *     })
+     */
+    updateTemplate(id: string, request: phenoml.summary.UpdateSummaryTemplateRequest, requestOptions?: Summary.RequestOptions): core.HttpResponsePromise<phenoml.summary.SummaryUpdateTemplateResponse>;
+    private __updateTemplate;
+    /**
+     * Deletes a summary template
+     *
+     * @param {string} id - Template ID
+     * @param {Summary.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.summary.UnauthorizedError}
+     * @throws {@link phenoml.summary.ForbiddenError}
+     * @throws {@link phenoml.summary.NotFoundError}
+     * @throws {@link phenoml.summary.InternalServerError}
+     *
+     * @example
+     *     await client.summary.deleteTemplate("id")
+     */
+    deleteTemplate(id: string, requestOptions?: Summary.RequestOptions): core.HttpResponsePromise<phenoml.summary.SummaryDeleteTemplateResponse>;
+    private __deleteTemplate;
+    /**
+     * Creates a summary from FHIR resources using one of two modes:
+     * - **narrative**: Uses a template to substitute FHIR data into placeholders (requires template_id)
+     * - **flatten**: Flattens FHIR resources into a searchable format for RAG/search (no template needed)
+     *
+     * @param {phenoml.summary.CreateSummaryRequest} request
+     * @param {Summary.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.summary.BadRequestError}
+     * @throws {@link phenoml.summary.UnauthorizedError}
+     * @throws {@link phenoml.summary.ForbiddenError}
+     * @throws {@link phenoml.summary.NotFoundError}
+     * @throws {@link phenoml.summary.InternalServerError}
+     *
+     * @example
+     *     await client.summary.create({
+     *         fhir_resources: {
+     *             resourceType: "resourceType"
+     *         }
+     *     })
+     */
+    create(request: phenoml.summary.CreateSummaryRequest, requestOptions?: Summary.RequestOptions): core.HttpResponsePromise<phenoml.summary.CreateSummaryResponse>;
+    private __create;
+    protected _getAuthorizationHeader(): Promise<string>;
+}