phenoml 0.0.6 → 0.0.8

package/dist/esm/api/resources/tools/resources/mcpServer/client/index.mjs

@@ -1,2 +1 @@
-export {};
 export * from "./requests/index.mjs";

package/dist/esm/api/resources/tools/resources/mcpServer/client/requests/index.d.mts

@@ -1 +1 @@
-export { type McpServerCreateRequest } from "./McpServerCreateRequest.mjs";
+export type { McpServerCreateRequest } from "./McpServerCreateRequest.mjs";

package/dist/esm/api/resources/tools/resources/mcpServer/client/requests/index.mjs

@@ -1 +1 @@
-export {} from "./McpServerCreateRequest.mjs";
+export {};

package/dist/esm/api/resources/tools/resources/mcpServer/resources/index.d.mts

@@ -1,2 +1,2 @@
-export * as tools from "./tools/index.mjs";
 export * from "./tools/client/requests/index.mjs";
+export * as tools from "./tools/index.mjs";

package/dist/esm/api/resources/tools/resources/mcpServer/resources/index.mjs

@@ -1,2 +1,2 @@
-export * as tools from "./tools/index.mjs";
 export * from "./tools/client/requests/index.mjs";
+export * as tools from "./tools/index.mjs";

package/dist/esm/api/resources/tools/resources/mcpServer/resources/tools/client/Client.d.mts

@@ -9,7 +9,7 @@ export declare namespace Tools {
 }
 export declare class Tools {
     protected readonly _options: Tools.Options;
-    constructor(_options?: Tools.Options);
+    constructor(_options: Tools.Options);
     /**
      * Lists all MCP server tools for a specific MCP server
      *
@@ -76,5 +76,5 @@ export declare class Tools {
      */
     call(mcpServerToolId: string, request: phenoml.tools.mcpServer.McpServerToolCallRequest, requestOptions?: Tools.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolCallResponse>;
     private __call;
-    protected _getAuthorizationHeader(): Promise<string | undefined>;
+    protected _getAuthorizationHeader(): Promise<string>;
 }

package/dist/esm/api/resources/tools/resources/mcpServer/resources/tools/client/Client.mjs

@@ -8,13 +8,13 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
         step((generator = generator.apply(thisArg, _arguments || [])).next());
     });
 };
-import * as environments from "../../../../../../../../environments.mjs";
-import * as core from "../../../../../../../../core/index.mjs";
-import * as phenoml from "../../../../../../../index.mjs";
 import { mergeHeaders, mergeOnlyDefinedHeaders } from "../../../../../../../../core/headers.mjs";
+import * as core from "../../../../../../../../core/index.mjs";
+import * as environments from "../../../../../../../../environments.mjs";
 import * as errors from "../../../../../../../../errors/index.mjs";
+import * as phenoml from "../../../../../../../index.mjs";
 export class Tools {
-    constructor(_options = {}) {
+    constructor(_options) {
         this._options = _options;
     }
     /**
@@ -36,9 +36,9 @@ export class Tools {
     __list(mcpServerId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${encodeURIComponent(mcpServerId)}/list`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcpServerId)}/list`),
                 method: "GET",
                 headers: _headers,
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
@@ -101,9 +101,9 @@ export class Tools {
     __get(mcpServerToolId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${encodeURIComponent(mcpServerToolId)}`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}`),
                 method: "GET",
                 headers: _headers,
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
@@ -166,9 +166,9 @@ export class Tools {
     __delete(mcpServerToolId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${encodeURIComponent(mcpServerToolId)}`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}`),
                 method: "DELETE",
                 headers: _headers,
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
@@ -237,9 +237,9 @@ export class Tools {
     __call(mcpServerToolId, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${encodeURIComponent(mcpServerToolId)}/call`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}/call`),
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
@@ -293,11 +293,7 @@ export class Tools {
     }
     _getAuthorizationHeader() {
         return __awaiter(this, void 0, void 0, function* () {
-            const bearer = yield core.Supplier.get(this._options.token);
-            if (bearer != null) {
-                return `Bearer ${bearer}`;
-            }
-            return undefined;
+            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
         });
     }
 }

package/dist/esm/api/resources/tools/resources/mcpServer/resources/tools/client/index.d.mts

@@ -1,2 +1 @@
-export {};
 export * from "./requests/index.mjs";

package/dist/esm/api/resources/tools/resources/mcpServer/resources/tools/client/index.mjs

@@ -1,2 +1 @@
-export {};
 export * from "./requests/index.mjs";

package/dist/esm/api/resources/tools/resources/mcpServer/resources/tools/client/requests/index.d.mts

@@ -1 +1 @@
-export { type McpServerToolCallRequest } from "./McpServerToolCallRequest.mjs";
+export type { McpServerToolCallRequest } from "./McpServerToolCallRequest.mjs";

package/dist/esm/api/resources/tools/resources/mcpServer/resources/tools/client/requests/index.mjs

@@ -1 +1 @@
-export {} from "./McpServerToolCallRequest.mjs";
+export {};

package/dist/esm/api/resources/tools/types/CohortResponse.d.mts

@@ -1,4 +1,4 @@
-import * as phenoml from "../../../index.mjs";
+import type * as phenoml from "../../../index.mjs";
 export interface CohortResponse {
     /** Whether the cohort analysis was successful */
     success?: boolean;

package/dist/esm/api/resources/tools/types/CohortResponse.mjs

@@ -1,2 +1,2 @@
 // This file was auto-generated by Fern from our API Definition.
-import * as phenoml from "../../../index.mjs";
+export {};

package/dist/esm/api/resources/tools/types/index.d.mts

@@ -1,6 +1,6 @@
+export * from "./CohortResponse.mjs";
 export * from "./Lang2FhirAndCreateResponse.mjs";
 export * from "./Lang2FhirAndSearchResponse.mjs";
-export * from "./CohortResponse.mjs";
 export * from "./McpServerResponse.mjs";
 export * from "./McpServerToolCallResponse.mjs";
 export * from "./McpServerToolResponse.mjs";

package/dist/esm/api/resources/tools/types/index.mjs

@@ -1,6 +1,6 @@
+export * from "./CohortResponse.mjs";
 export * from "./Lang2FhirAndCreateResponse.mjs";
 export * from "./Lang2FhirAndSearchResponse.mjs";
-export * from "./CohortResponse.mjs";
 export * from "./McpServerResponse.mjs";
 export * from "./McpServerToolCallResponse.mjs";
 export * from "./McpServerToolResponse.mjs";

package/dist/esm/api/resources/workflows/client/Client.d.mts

@@ -1,7 +1,6 @@
 import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.mjs";
 import * as core from "../../../../core/index.mjs";
-import { Workflows as Workflows_ } from "../resources/workflows/client/Client.mjs";
-import { McpServer } from "../resources/mcpServer/client/Client.mjs";
+import * as phenoml from "../../../index.mjs";
 export declare namespace Workflows {
     interface Options extends BaseClientOptions {
     }
@@ -10,34 +9,137 @@ export declare namespace Workflows {
 }
 export declare class Workflows {
     protected readonly _options: Workflows.Options;
-    protected _workflows: Workflows_ | undefined;
-    protected _mcpServer: McpServer | undefined;
-    constructor(_options?: Workflows.Options);
-    get workflows(): Workflows_;
-    get mcpServer(): McpServer;
+    constructor(_options: Workflows.Options);
     /**
+     * Retrieves all workflow definitions for the authenticated user
+     *
+     * @param {phenoml.workflows.WorkflowsListRequest} request
+     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.workflows.UnauthorizedError}
+     * @throws {@link phenoml.workflows.ForbiddenError}
+     * @throws {@link phenoml.workflows.InternalServerError}
+     *
+     * @example
+     *     await client.workflows.list({
+     *         verbose: true
+     *     })
+     */
+    list(request?: phenoml.workflows.WorkflowsListRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.ListWorkflowsResponse>;
+    private __list;
+    /**
+     * Creates a new workflow definition with graph generation from workflow instructions
+     *
+     * @param {phenoml.workflows.CreateWorkflowRequest} request
      * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
      *
+     * @throws {@link phenoml.workflows.BadRequestError}
+     * @throws {@link phenoml.workflows.UnauthorizedError}
+     * @throws {@link phenoml.workflows.ForbiddenError}
+     * @throws {@link phenoml.workflows.InternalServerError}
+     *
      * @example
-     *     await client.workflows.createFhirResource()
+     *     await client.workflows.create({
+     *         verbose: true,
+     *         name: "Patient Data Mapping Workflow",
+     *         workflow_instructions: "Given diagnosis data, find the patient and create condition record",
+     *         sample_data: {
+     *             "patient_last_name": "Rippin",
+     *             "patient_first_name": "Clay",
+     *             "diagnosis_code": "I10"
+     *         },
+     *         fhir_provider_id: "550e8400-e29b-41d4-a716-446655440000"
+     *     })
      */
-    createFhirResource(requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<void>;
-    private __createFhirResource;
+    create(request: phenoml.workflows.CreateWorkflowRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.CreateWorkflowResponse>;
+    private __create;
     /**
+     * Retrieves a workflow definition by its ID
+     *
+     * @param {string} id - ID of the workflow to retrieve
+     * @param {phenoml.workflows.WorkflowsGetRequest} request
      * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
      *
+     * @throws {@link phenoml.workflows.UnauthorizedError}
+     * @throws {@link phenoml.workflows.ForbiddenError}
+     * @throws {@link phenoml.workflows.NotFoundError}
+     * @throws {@link phenoml.workflows.InternalServerError}
+     *
      * @example
-     *     await client.workflows.searchFhirResources()
+     *     await client.workflows.get("id", {
+     *         verbose: true
+     *     })
      */
-    searchFhirResources(requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<void>;
-    private __searchFhirResources;
+    get(id: string, request?: phenoml.workflows.WorkflowsGetRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsGetResponse>;
+    private __get;
     /**
+     * Updates an existing workflow definition
+     *
+     * @param {string} id - ID of the workflow to update
+     * @param {phenoml.workflows.UpdateWorkflowRequest} request
      * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
      *
+     * @throws {@link phenoml.workflows.BadRequestError}
+     * @throws {@link phenoml.workflows.UnauthorizedError}
+     * @throws {@link phenoml.workflows.ForbiddenError}
+     * @throws {@link phenoml.workflows.NotFoundError}
+     * @throws {@link phenoml.workflows.InternalServerError}
+     *
+     * @example
+     *     await client.workflows.update("id", {
+     *         verbose: true,
+     *         name: "Updated Patient Data Mapping Workflow",
+     *         workflow_instructions: "Given diagnosis data, find the patient and create condition record",
+     *         sample_data: {
+     *             "patient_last_name": "Smith",
+     *             "patient_first_name": "John",
+     *             "diagnosis_code": "E11"
+     *         },
+     *         fhir_provider_id: "550e8400-e29b-41d4-a716-446655440000"
+     *     })
+     */
+    update(id: string, request: phenoml.workflows.UpdateWorkflowRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsUpdateResponse>;
+    private __update;
+    /**
+     * Deletes a workflow definition by its ID
+     *
+     * @param {string} id - ID of the workflow to delete
+     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.workflows.UnauthorizedError}
+     * @throws {@link phenoml.workflows.ForbiddenError}
+     * @throws {@link phenoml.workflows.NotFoundError}
+     * @throws {@link phenoml.workflows.InternalServerError}
+     *
+     * @example
+     *     await client.workflows.delete("id")
+     */
+    delete(id: string, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsDeleteResponse>;
+    private __delete;
+    /**
+     * Executes a workflow with provided input data and returns results
+     *
+     * @param {string} id - ID of the workflow to execute
+     * @param {phenoml.workflows.ExecuteWorkflowRequest} request
+     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.workflows.BadRequestError}
+     * @throws {@link phenoml.workflows.UnauthorizedError}
+     * @throws {@link phenoml.workflows.ForbiddenError}
+     * @throws {@link phenoml.workflows.NotFoundError}
+     * @throws {@link phenoml.workflows.InternalServerError}
+     *
      * @example
-     *     await client.workflows.analyzeCohort()
+     *     await client.workflows.execute("id", {
+     *         input_data: {
+     *             "patient_last_name": "Johnson",
+     *             "patient_first_name": "Mary",
+     *             "diagnosis_code": "M79.3",
+     *             "encounter_date": "2024-01-15"
+     *         }
+     *     })
      */
-    analyzeCohort(requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<void>;
-    private __analyzeCohort;
-    protected _getAuthorizationHeader(): Promise<string | undefined>;
+    execute(id: string, request: phenoml.workflows.ExecuteWorkflowRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.ExecuteWorkflowResponse>;
+    private __execute;
+    protected _getAuthorizationHeader(): Promise<string>;
 }