phenoml 0.0.4 → 0.0.7

package/dist/esm/api/resources/cohort/types/CohortResponse.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-export {};
+// This file was auto-generated by Fern from our API Definition.
+import * as phenoml from "../../../index.mjs";

package/dist/esm/api/resources/cohort/types/SearchConcept.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface SearchConcept {
     /** The FHIR resource type for this search concept */
     resource_type?: string;

package/dist/esm/api/resources/cohort/types/SearchConcept.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/construe/client/Client.d.mts

@@ -1,30 +1,10 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-import * as environments from "../../../../environments.mjs";
+import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.mjs";
 import * as core from "../../../../core/index.mjs";
 import * as phenoml from "../../../index.mjs";
 export declare namespace Construe {
-    interface Options {
-        environment?: core.Supplier<environments.phenomlEnvironment | string>;
-        /** Specify a custom URL to connect the client to. */
-        baseUrl?: core.Supplier<string>;
-        token?: core.Supplier<core.BearerToken | undefined>;
-        /** Additional headers to include in requests. */
-        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
-        fetcher?: core.FetchFunction;
+    interface Options extends BaseClientOptions {
     }
-    interface RequestOptions {
-        /** The maximum time to wait for a response in seconds. */
-        timeoutInSeconds?: number;
-        /** The number of times to retry the request. Defaults to 2. */
-        maxRetries?: number;
-        /** A hook to abort the request. */
-        abortSignal?: AbortSignal;
-        /** Additional query string parameters to include in the request. */
-        queryParams?: Record<string, unknown>;
-        /** Additional headers to include in the request. */
-        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
+    interface RequestOptions extends BaseRequestOptions {
     }
 }
 export declare class Construe {

package/dist/esm/api/resources/construe/client/Client.mjs

@@ -1,6 +1,4 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
     function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
     return new (P || (P = Promise))(function (resolve, reject) {
@@ -46,7 +44,7 @@ export class Construe {
     }
     __uploadCodeSystem(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "construe/upload"),
@@ -56,8 +54,8 @@ export class Construe {
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
                 body: request,
-                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
-                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
+                maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
             });
             if (_response.ok) {
@@ -124,7 +122,7 @@ export class Construe {
     }
     __extractCodes(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "construe/extract"),
@@ -134,8 +132,8 @@ export class Construe {
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
                 body: request,
-                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
-                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
+                maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
             });
             if (_response.ok) {
@@ -197,7 +195,7 @@ export class Construe {
     }
     __cohort(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "construe/cohort"),
@@ -207,8 +205,8 @@ export class Construe {
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
                 body: request,
-                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
-                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
+                maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
             });
             if (_response.ok) {

package/dist/esm/api/resources/construe/client/index.mjs

@@ -1 +1,2 @@
+export {};
 export * from "./requests/index.mjs";

package/dist/esm/api/resources/construe/client/requests/ConstrueCohortRequest.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 /**
  * @example
  *     {

package/dist/esm/api/resources/construe/client/requests/ConstrueCohortRequest.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/construe/client/requests/ExtractRequest.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as phenoml from "../../../../index.mjs";
 /**
  * @example

package/dist/esm/api/resources/construe/client/requests/ExtractRequest.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-export {};
+// This file was auto-generated by Fern from our API Definition.
+import * as phenoml from "../../../../index.mjs";

package/dist/esm/api/resources/construe/client/requests/UploadRequest.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 /**
  * @example
  *     {
@@ -29,12 +26,10 @@ export interface UploadRequest {
     defn_col?: string;
 }
 export declare namespace UploadRequest {
-    /**
-     * Format of the uploaded file
-     */
-    type Format = "json" | "csv";
+    /** Format of the uploaded file */
     const Format: {
         readonly Json: "json";
         readonly Csv: "csv";
     };
+    type Format = (typeof Format)[keyof typeof Format];
 }

package/dist/esm/api/resources/construe/client/requests/UploadRequest.mjs

@@ -1,8 +1,7 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export var UploadRequest;
 (function (UploadRequest) {
+    /** Format of the uploaded file */
     UploadRequest.Format = {
         Json: "json",
         Csv: "csv",

package/dist/esm/api/resources/construe/client/requests/index.mjs

@@ -1 +1,3 @@
-export {};
+export {} from "./UploadRequest.mjs";
+export {} from "./ExtractRequest.mjs";
+export {} from "./ConstrueCohortRequest.mjs";

package/dist/esm/api/resources/construe/errors/BadRequestError.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.mjs";
 import * as core from "../../../../core/index.mjs";
 export declare class BadRequestError extends errors.phenomlError {

package/dist/esm/api/resources/construe/errors/BadRequestError.mjs

@@ -1,7 +1,6 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 import * as errors from "../../../../errors/index.mjs";
+import * as core from "../../../../core/index.mjs";
 export class BadRequestError extends errors.phenomlError {
     constructor(body, rawResponse) {
         super({

package/dist/esm/api/resources/construe/errors/ConflictError.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.mjs";
 import * as core from "../../../../core/index.mjs";
 export declare class ConflictError extends errors.phenomlError {

package/dist/esm/api/resources/construe/errors/ConflictError.mjs

@@ -1,7 +1,6 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 import * as errors from "../../../../errors/index.mjs";
+import * as core from "../../../../core/index.mjs";
 export class ConflictError extends errors.phenomlError {
     constructor(body, rawResponse) {
         super({

package/dist/esm/api/resources/construe/errors/FailedDependencyError.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.mjs";
 import * as core from "../../../../core/index.mjs";
 export declare class FailedDependencyError extends errors.phenomlError {

package/dist/esm/api/resources/construe/errors/FailedDependencyError.mjs

@@ -1,7 +1,6 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 import * as errors from "../../../../errors/index.mjs";
+import * as core from "../../../../core/index.mjs";
 export class FailedDependencyError extends errors.phenomlError {
     constructor(body, rawResponse) {
         super({

package/dist/esm/api/resources/construe/errors/InternalServerError.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.mjs";
 import * as core from "../../../../core/index.mjs";
 export declare class InternalServerError extends errors.phenomlError {

package/dist/esm/api/resources/construe/errors/InternalServerError.mjs

@@ -1,7 +1,6 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 import * as errors from "../../../../errors/index.mjs";
+import * as core from "../../../../core/index.mjs";
 export class InternalServerError extends errors.phenomlError {
     constructor(body, rawResponse) {
         super({

package/dist/esm/api/resources/construe/errors/UnauthorizedError.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.mjs";
 import * as core from "../../../../core/index.mjs";
 export declare class UnauthorizedError extends errors.phenomlError {

package/dist/esm/api/resources/construe/errors/UnauthorizedError.mjs

@@ -1,7 +1,6 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 import * as errors from "../../../../errors/index.mjs";
+import * as core from "../../../../core/index.mjs";
 export class UnauthorizedError extends errors.phenomlError {
     constructor(body, rawResponse) {
         super({

package/dist/esm/api/resources/construe/types/BadRequestErrorBody.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface BadRequestErrorBody {
     /** HTTP status code. */
     status?: number;

package/dist/esm/api/resources/construe/types/BadRequestErrorBody.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/construe/types/ConstrueCohortResponse.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ConstrueCohortResponse {
     queries?: ConstrueCohortResponse.Queries.Item[];
     /** Generated SQL query when `sql_syntax` is specified. Variables in curly braces need to be replaced with your actual table names. */

package/dist/esm/api/resources/construe/types/ConstrueCohortResponse.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/construe/types/ConstrueUploadCodeSystemResponse.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ConstrueUploadCodeSystemResponse {
     status?: string;
 }

package/dist/esm/api/resources/construe/types/ConstrueUploadCodeSystemResponse.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/construe/types/ExtractCodesResult.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as phenoml from "../../../index.mjs";
 export interface ExtractCodesResult {
     system: phenoml.construe.ExtractRequestSystem;

package/dist/esm/api/resources/construe/types/ExtractCodesResult.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-export {};
+// This file was auto-generated by Fern from our API Definition.
+import * as phenoml from "../../../index.mjs";

package/dist/esm/api/resources/construe/types/ExtractRequestConfig.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ExtractRequestConfig {
     chunking_method?: ExtractRequestConfig.ChunkingMethod;
     max_codes_per_chunk?: number;
@@ -8,11 +5,11 @@ export interface ExtractRequestConfig {
     include_rationale?: boolean;
 }
 export declare namespace ExtractRequestConfig {
-    type ChunkingMethod = "none" | "sentence" | "paragraph" | "topics";
     const ChunkingMethod: {
         readonly None: "none";
         readonly Sentence: "sentence";
         readonly Paragraph: "paragraph";
         readonly Topics: "topics";
     };
+    type ChunkingMethod = (typeof ChunkingMethod)[keyof typeof ChunkingMethod];
 }

package/dist/esm/api/resources/construe/types/ExtractRequestConfig.mjs

@@ -1,6 +1,4 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export var ExtractRequestConfig;
 (function (ExtractRequestConfig) {
     ExtractRequestConfig.ChunkingMethod = {

package/dist/esm/api/resources/construe/types/ExtractRequestSystem.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ExtractRequestSystem {
     /**
      * Code system name. Can be a built-in system or a custom system name.

package/dist/esm/api/resources/construe/types/ExtractRequestSystem.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/construe/types/ExtractedCodeResult.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ExtractedCodeResult {
     /** The extracted code */
     code: string;

package/dist/esm/api/resources/construe/types/ExtractedCodeResult.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/construe/types/InternalServerErrorBody.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface InternalServerErrorBody {
     /** HTTP status code. */
     status?: number;

package/dist/esm/api/resources/construe/types/InternalServerErrorBody.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/construe/types/UnauthorizedErrorBody.d.mts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface UnauthorizedErrorBody {
     /** HTTP status code. */
     status?: number;

package/dist/esm/api/resources/construe/types/UnauthorizedErrorBody.mjs

@@ -1,4 +1,2 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 export {};

package/dist/esm/api/resources/fhir/client/Client.d.mts

@@ -1,30 +1,10 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-import * as environments from "../../../../environments.mjs";
+import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.mjs";
 import * as core from "../../../../core/index.mjs";
 import * as phenoml from "../../../index.mjs";
 export declare namespace Fhir {
-    interface Options {
-        environment?: core.Supplier<environments.phenomlEnvironment | string>;
-        /** Specify a custom URL to connect the client to. */
-        baseUrl?: core.Supplier<string>;
-        token?: core.Supplier<core.BearerToken | undefined>;
-        /** Additional headers to include in requests. */
-        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
-        fetcher?: core.FetchFunction;
+    interface Options extends BaseClientOptions {
     }
-    interface RequestOptions {
-        /** The maximum time to wait for a response in seconds. */
-        timeoutInSeconds?: number;
-        /** The number of times to retry the request. Defaults to 2. */
-        maxRetries?: number;
-        /** A hook to abort the request. */
-        abortSignal?: AbortSignal;
-        /** Additional query string parameters to include in the request. */
-        queryParams?: Record<string, unknown>;
-        /** Additional headers to include in the request. */
-        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
+    interface RequestOptions extends BaseRequestOptions {
     }
 }
 export declare class Fhir {
@@ -82,7 +62,17 @@ export declare class Fhir {
      *     await client.fhir.create("550e8400-e29b-41d4-a716-446655440000", "Patient", {
      *         "X-Phenoml-On-Behalf-Of": "user@example.com",
      *         body: {
-     *             resourceType: "Patient"
+     *             resourceType: "Patient",
+     *             name: [
+     *                 {
+     *                     "family": "Doe",
+     *                     "given": [
+     *                         "Jane"
+     *                     ]
+     *                 }
+     *             ],
+     *             gender: "female",
+     *             birthDate: "1990-01-01"
      *         }
      *     })
      */
@@ -113,7 +103,18 @@ export declare class Fhir {
      *         "X-Phenoml-On-Behalf-Of": "user@example.com",
      *         body: {
      *             resourceType: "Patient",
-     *             id: "123"
+     *             id: "123",
+     *             name: [
+     *                 {
+     *                     "family": "Doe",
+     *                     "given": [
+     *                         "John",
+     *                         "Updated"
+     *                     ]
+     *                 }
+     *             ],
+     *             gender: "male",
+     *             birthDate: "1985-05-15"
      *         }
      *     })
      */