phenoml 0.0.3 → 0.0.6

package/dist/cjs/api/resources/construe/client/requests/UploadRequest.js

@@ -1,11 +1,10 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.UploadRequest = void 0;
 var UploadRequest;
 (function (UploadRequest) {
+    /** Format of the uploaded file */
     UploadRequest.Format = {
         Json: "json",
         Csv: "csv",

package/dist/cjs/api/resources/construe/errors/BadRequestError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class BadRequestError extends errors.phenomlError {

package/dist/cjs/api/resources/construe/errors/BadRequestError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/construe/errors/ConflictError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class ConflictError extends errors.phenomlError {

package/dist/cjs/api/resources/construe/errors/ConflictError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/construe/errors/FailedDependencyError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class FailedDependencyError extends errors.phenomlError {

package/dist/cjs/api/resources/construe/errors/FailedDependencyError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/construe/errors/InternalServerError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class InternalServerError extends errors.phenomlError {

package/dist/cjs/api/resources/construe/errors/InternalServerError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/construe/errors/UnauthorizedError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class UnauthorizedError extends errors.phenomlError {

package/dist/cjs/api/resources/construe/errors/UnauthorizedError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/construe/types/BadRequestErrorBody.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface BadRequestErrorBody {
     /** HTTP status code. */
     status?: number;

package/dist/cjs/api/resources/construe/types/BadRequestErrorBody.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/ConstrueCohortResponse.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ConstrueCohortResponse {
     queries?: ConstrueCohortResponse.Queries.Item[];
     /** Generated SQL query when `sql_syntax` is specified. Variables in curly braces need to be replaced with your actual table names. */

package/dist/cjs/api/resources/construe/types/ConstrueCohortResponse.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/ConstrueUploadCodeSystemResponse.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ConstrueUploadCodeSystemResponse {
     status?: string;
 }

package/dist/cjs/api/resources/construe/types/ConstrueUploadCodeSystemResponse.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/ExtractCodesResult.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as phenoml from "../../../index.js";
 export interface ExtractCodesResult {
     system: phenoml.construe.ExtractRequestSystem;

package/dist/cjs/api/resources/construe/types/ExtractCodesResult.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/ExtractRequestConfig.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ExtractRequestConfig {
     chunking_method?: ExtractRequestConfig.ChunkingMethod;
     max_codes_per_chunk?: number;
@@ -8,11 +5,11 @@ export interface ExtractRequestConfig {
     include_rationale?: boolean;
 }
 export declare namespace ExtractRequestConfig {
-    type ChunkingMethod = "none" | "sentence" | "paragraph" | "topics";
     const ChunkingMethod: {
         readonly None: "none";
         readonly Sentence: "sentence";
         readonly Paragraph: "paragraph";
         readonly Topics: "topics";
     };
+    type ChunkingMethod = (typeof ChunkingMethod)[keyof typeof ChunkingMethod];
 }

package/dist/cjs/api/resources/construe/types/ExtractRequestConfig.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.ExtractRequestConfig = void 0;
 var ExtractRequestConfig;

package/dist/cjs/api/resources/construe/types/ExtractRequestSystem.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ExtractRequestSystem {
     /**
      * Code system name. Can be a built-in system or a custom system name.

package/dist/cjs/api/resources/construe/types/ExtractRequestSystem.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/ExtractedCodeResult.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface ExtractedCodeResult {
     /** The extracted code */
     code: string;

package/dist/cjs/api/resources/construe/types/ExtractedCodeResult.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/InternalServerErrorBody.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface InternalServerErrorBody {
     /** HTTP status code. */
     status?: number;

package/dist/cjs/api/resources/construe/types/InternalServerErrorBody.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/UnauthorizedErrorBody.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface UnauthorizedErrorBody {
     /** HTTP status code. */
     status?: number;

package/dist/cjs/api/resources/construe/types/UnauthorizedErrorBody.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir/client/Client.d.ts

@@ -0,0 +1,294 @@
+import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.js";
+import * as core from "../../../../core/index.js";
+import * as phenoml from "../../../index.js";
+export declare namespace Fhir {
+    interface Options extends BaseClientOptions {
+    }
+    interface RequestOptions extends BaseRequestOptions {
+    }
+}
+export declare class Fhir {
+    protected readonly _options: Fhir.Options;
+    constructor(_options?: Fhir.Options);
+    /**
+     * Retrieves FHIR resources from the specified provider. Supports both individual resource retrieval and search operations based on the FHIR path and query parameters.
+     *
+     * The request is proxied to the configured FHIR server with appropriate authentication headers.
+     *
+     * @param {string} fhirProviderId - The ID of the FHIR provider to use. Can be either:
+     *                                  - A UUID representing the provider ID
+     *                                  - A provider name (legacy support - will just use the most recently updated provider with this name)
+     * @param {string} fhirPath - The FHIR resource path to operate on. This follows FHIR RESTful API conventions.
+     *                            Examples:
+     *                            - "Patient" (for resource type operations)
+     *                            - "Patient/123" (for specific resource operations)
+     *                            - "Patient/123/_history" (for history operations)
+     * @param {phenoml.fhir.FhirSearchRequest} request
+     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.fhir.BadRequestError}
+     * @throws {@link phenoml.fhir.UnauthorizedError}
+     * @throws {@link phenoml.fhir.NotFoundError}
+     * @throws {@link phenoml.fhir.InternalServerError}
+     *
+     * @example
+     *     await client.fhir.search("550e8400-e29b-41d4-a716-446655440000", "Patient", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com"
+     *     })
+     */
+    search(fhirProviderId: string, fhirPath: string, request?: phenoml.fhir.FhirSearchRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirSearchResponse>;
+    private __search;
+    /**
+     * Creates a new FHIR resource on the specified provider. The request body should contain a valid FHIR resource in JSON format.
+     *
+     * The request is proxied to the configured FHIR server with appropriate authentication headers.
+     *
+     * @param {string} fhirProviderId - The ID of the FHIR provider to use. Can be either:
+     *                                  - A UUID representing the provider ID
+     *                                  - A provider name (legacy support - will just use the most recently updated provider with this name)
+     * @param {string} fhirPath - The FHIR resource path to operate on. This follows FHIR RESTful API conventions.
+     *                            Examples:
+     *                            - "Patient" (for resource type operations)
+     *                            - "Patient/123" (for specific resource operations)
+     *                            - "Patient/123/_history" (for history operations)
+     * @param {phenoml.fhir.FhirCreateRequest} request
+     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.fhir.BadRequestError}
+     * @throws {@link phenoml.fhir.UnauthorizedError}
+     * @throws {@link phenoml.fhir.InternalServerError}
+     *
+     * @example
+     *     await client.fhir.create("550e8400-e29b-41d4-a716-446655440000", "Patient", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com",
+     *         body: {
+     *             resourceType: "Patient",
+     *             name: [
+     *                 {
+     *                     "family": "Doe",
+     *                     "given": [
+     *                         "Jane"
+     *                     ]
+     *                 }
+     *             ],
+     *             gender: "female",
+     *             birthDate: "1990-01-01"
+     *         }
+     *     })
+     */
+    create(fhirProviderId: string, fhirPath: string, request: phenoml.fhir.FhirCreateRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
+    private __create;
+    /**
+     * Creates or updates a FHIR resource on the specified provider. If the resource exists, it will be updated; otherwise, it will be created.
+     *
+     * The request is proxied to the configured FHIR server with appropriate authentication headers.
+     *
+     * @param {string} fhirProviderId - The ID of the FHIR provider to use. Can be either:
+     *                                  - A UUID representing the provider ID
+     *                                  - A provider name (legacy support - will just use the most recently updated provider with this name)
+     * @param {string} fhirPath - The FHIR resource path to operate on. This follows FHIR RESTful API conventions.
+     *                            Examples:
+     *                            - "Patient" (for resource type operations)
+     *                            - "Patient/123" (for specific resource operations)
+     *                            - "Patient/123/_history" (for history operations)
+     * @param {phenoml.fhir.FhirUpsertRequest} request
+     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.fhir.BadRequestError}
+     * @throws {@link phenoml.fhir.UnauthorizedError}
+     * @throws {@link phenoml.fhir.InternalServerError}
+     *
+     * @example
+     *     await client.fhir.upsert("550e8400-e29b-41d4-a716-446655440000", "Patient", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com",
+     *         body: {
+     *             resourceType: "Patient",
+     *             id: "123",
+     *             name: [
+     *                 {
+     *                     "family": "Doe",
+     *                     "given": [
+     *                         "John",
+     *                         "Updated"
+     *                     ]
+     *                 }
+     *             ],
+     *             gender: "male",
+     *             birthDate: "1985-05-15"
+     *         }
+     *     })
+     */
+    upsert(fhirProviderId: string, fhirPath: string, request: phenoml.fhir.FhirUpsertRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
+    private __upsert;
+    /**
+     * Deletes a FHIR resource from the specified provider.
+     *
+     * The request is proxied to the configured FHIR server with appropriate authentication headers.
+     *
+     * @param {string} fhirProviderId - The ID of the FHIR provider to use. Can be either:
+     *                                  - A UUID representing the provider ID
+     *                                  - A provider name (legacy support - will just use the most recently updated provider with this name)
+     * @param {string} fhirPath - The FHIR resource path to operate on. This follows FHIR RESTful API conventions.
+     *                            Examples:
+     *                            - "Patient" (for resource type operations)
+     *                            - "Patient/123" (for specific resource operations)
+     *                            - "Patient/123/_history" (for history operations)
+     * @param {phenoml.fhir.FhirDeleteRequest} request
+     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.fhir.BadRequestError}
+     * @throws {@link phenoml.fhir.UnauthorizedError}
+     * @throws {@link phenoml.fhir.NotFoundError}
+     * @throws {@link phenoml.fhir.InternalServerError}
+     *
+     * @example
+     *     await client.fhir.delete("550e8400-e29b-41d4-a716-446655440000", "Patient", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com"
+     *     })
+     */
+    delete(fhirProviderId: string, fhirPath: string, request?: phenoml.fhir.FhirDeleteRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<Record<string, unknown>>;
+    private __delete;
+    /**
+     * Partially updates a FHIR resource on the specified provider using JSON Patch operations as defined in RFC 6902.
+     *
+     * The request body should contain an array of JSON Patch operations. Each operation specifies:
+     * - `op`: The operation type (add, remove, replace, move, copy, test)
+     * - `path`: JSON Pointer to the target location in the resource
+     * - `value`: The value to use (required for add, replace, and test operations)
+     *
+     * The request is proxied to the configured FHIR server with appropriate authentication headers.
+     *
+     * @param {string} fhirProviderId - The ID of the FHIR provider to use. Can be either:
+     *                                  - A UUID representing the provider ID
+     *                                  - A provider name (legacy support - will just use the most recently updated provider with this name)
+     * @param {string} fhirPath - The FHIR resource path to operate on. This follows FHIR RESTful API conventions.
+     *                            Examples:
+     *                            - "Patient" (for resource type operations)
+     *                            - "Patient/123" (for specific resource operations)
+     *                            - "Patient/123/_history" (for history operations)
+     * @param {phenoml.fhir.FhirPatchRequest} request
+     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.fhir.BadRequestError}
+     * @throws {@link phenoml.fhir.UnauthorizedError}
+     * @throws {@link phenoml.fhir.NotFoundError}
+     * @throws {@link phenoml.fhir.InternalServerError}
+     *
+     * @example
+     *     await client.fhir.patch("550e8400-e29b-41d4-a716-446655440000", "Patient", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com",
+     *         body: [{
+     *                 op: "replace",
+     *                 path: "/name/0/family",
+     *                 value: "NewFamilyName"
+     *             }]
+     *     })
+     *
+     * @example
+     *     await client.fhir.patch("550e8400-e29b-41d4-a716-446655440000", "Patient", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com",
+     *         body: [{
+     *                 op: "add",
+     *                 path: "/telecom/-",
+     *                 value: {
+     *                     "system": "phone",
+     *                     "value": "+1-555-123-4567",
+     *                     "use": "home"
+     *                 }
+     *             }]
+     *     })
+     *
+     * @example
+     *     await client.fhir.patch("550e8400-e29b-41d4-a716-446655440000", "Patient", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com",
+     *         body: [{
+     *                 op: "replace",
+     *                 path: "/name/0/family",
+     *                 value: "Smith"
+     *             }, {
+     *                 op: "add",
+     *                 path: "/telecom/-",
+     *                 value: {
+     *                     "system": "email",
+     *                     "value": "john.smith@example.com"
+     *                 }
+     *             }, {
+     *                 op: "remove",
+     *                 path: "/address/0"
+     *             }]
+     *     })
+     *
+     * @example
+     *     await client.fhir.patch("550e8400-e29b-41d4-a716-446655440000", "Patient", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com",
+     *         body: [{
+     *                 op: "test",
+     *                 path: "/gender",
+     *                 value: "male"
+     *             }, {
+     *                 op: "replace",
+     *                 path: "/gender",
+     *                 value: "female"
+     *             }]
+     *     })
+     */
+    patch(fhirProviderId: string, fhirPath: string, request: phenoml.fhir.FhirPatchRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
+    private __patch;
+    /**
+     * Executes a FHIR Bundle transaction or batch operation on the specified provider. This allows multiple FHIR resources to be processed in a single request.
+     *
+     * The request body should contain a valid FHIR Bundle resource with transaction or batch type.
+     *
+     * The request is proxied to the configured FHIR server with appropriate authentication headers.
+     *
+     * @param {string} fhirProviderId - The ID of the FHIR provider to use. Can be either:
+     *                                  - A UUID representing the provider ID
+     *                                  - A provider name (legacy support - will just use the most recently updated provider with this name)
+     * @param {phenoml.fhir.FhirExecuteBundleRequest} request
+     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.fhir.BadRequestError}
+     * @throws {@link phenoml.fhir.UnauthorizedError}
+     * @throws {@link phenoml.fhir.InternalServerError}
+     *
+     * @example
+     *     await client.fhir.executeBundle("550e8400-e29b-41d4-a716-446655440000", {
+     *         "X-Phenoml-On-Behalf-Of": "user@example.com",
+     *         body: {
+     *             resourceType: "Bundle",
+     *             entry: [{
+     *                     resource: {
+     *                         "resourceType": "Patient",
+     *                         "name": [
+     *                             {
+     *                                 "family": "Doe",
+     *                                 "given": [
+     *                                     "John"
+     *                                 ]
+     *                             }
+     *                         ]
+     *                     },
+     *                     request: {
+     *                         method: "POST",
+     *                         url: "Patient"
+     *                     }
+     *                 }, {
+     *                     resource: {
+     *                         "resourceType": "Observation",
+     *                         "status": "final",
+     *                         "subject": {
+     *                             "reference": "Patient/123"
+     *                         }
+     *                     },
+     *                     request: {
+     *                         method: "POST",
+     *                         url: "Observation"
+     *                     }
+     *                 }]
+     *         }
+     *     })
+     */
+    executeBundle(fhirProviderId: string, request: phenoml.fhir.FhirExecuteBundleRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirBundle>;
+    private __executeBundle;
+    protected _getAuthorizationHeader(): Promise<string | undefined>;
+}