phenoml 0.0.3 → 0.0.6

package/dist/cjs/api/resources/agent/types/SuccessResponse.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface SuccessResponse {
     success?: boolean;
     message?: string;

package/dist/cjs/api/resources/agent/types/SuccessResponse.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/agent/types/index.d.ts

@@ -2,17 +2,14 @@ export * from "./AgentListResponse.js";
 export * from "./AgentDeleteResponse.js";
 export * from "./AgentGetChatMessagesRequestOrder.js";
 export * from "./AgentGetChatMessagesResponse.js";
+export * from "./AgentCreateRequest.js";
 export * from "./AgentTemplate.js";
 export * from "./AgentResponse.js";
 export * from "./AgentChatResponse.js";
 export * from "./PromptTemplate.js";
 export * from "./AgentPromptsResponse.js";
-export * from "./AgentFhirConfig.js";
-export * from "./ChatFhirClientConfig.js";
 export * from "./ChatMessageTemplate.js";
 export * from "./ChatSessionTemplate.js";
 export * from "./SuccessResponse.js";
 export * from "./JsonPatch.js";
 export * from "./JsonPatchOperation.js";
-export * from "./ProviderType.js";
-export * from "./AgentProvider.js";

package/dist/cjs/api/resources/agent/types/index.js

@@ -18,17 +18,14 @@ __exportStar(require("./AgentListResponse.js"), exports);
 __exportStar(require("./AgentDeleteResponse.js"), exports);
 __exportStar(require("./AgentGetChatMessagesRequestOrder.js"), exports);
 __exportStar(require("./AgentGetChatMessagesResponse.js"), exports);
+__exportStar(require("./AgentCreateRequest.js"), exports);
 __exportStar(require("./AgentTemplate.js"), exports);
 __exportStar(require("./AgentResponse.js"), exports);
 __exportStar(require("./AgentChatResponse.js"), exports);
 __exportStar(require("./PromptTemplate.js"), exports);
 __exportStar(require("./AgentPromptsResponse.js"), exports);
-__exportStar(require("./AgentFhirConfig.js"), exports);
-__exportStar(require("./ChatFhirClientConfig.js"), exports);
 __exportStar(require("./ChatMessageTemplate.js"), exports);
 __exportStar(require("./ChatSessionTemplate.js"), exports);
 __exportStar(require("./SuccessResponse.js"), exports);
 __exportStar(require("./JsonPatch.js"), exports);
 __exportStar(require("./JsonPatchOperation.js"), exports);
-__exportStar(require("./ProviderType.js"), exports);
-__exportStar(require("./AgentProvider.js"), exports);

package/dist/cjs/api/resources/authtoken/client/Client.d.ts

@@ -1,23 +1,12 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-import * as environments from "../../../../environments.js";
-import * as core from "../../../../core/index.js";
+import type { BaseClientOptions } from "../../../../BaseClient.js";
 import { Auth } from "../resources/auth/client/Client.js";
 export declare namespace Authtoken {
-    interface Options {
-        environment?: core.Supplier<environments.phenomlEnvironment | string>;
-        /** Specify a custom URL to connect the client to. */
-        baseUrl?: core.Supplier<string>;
-        token: core.Supplier<core.BearerToken>;
-        /** Additional headers to include in requests. */
-        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
-        fetcher?: core.FetchFunction;
+    interface Options extends BaseClientOptions {
     }
 }
 export declare class Authtoken {
     protected readonly _options: Authtoken.Options;
     protected _auth: Auth | undefined;
-    constructor(_options: Authtoken.Options);
+    constructor(_options?: Authtoken.Options);
     get auth(): Auth;
 }

package/dist/cjs/api/resources/authtoken/client/Client.js

@@ -1,12 +1,10 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Authtoken = void 0;
 const Client_js_1 = require("../resources/auth/client/Client.js");
 class Authtoken {
-    constructor(_options) {
+    constructor(_options = {}) {
         this._options = _options;
     }
     get auth() {

package/dist/cjs/api/resources/authtoken/errors/BadRequestError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class BadRequestError extends errors.phenomlError {

package/dist/cjs/api/resources/authtoken/errors/BadRequestError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/authtoken/errors/UnauthorizedError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class UnauthorizedError extends errors.phenomlError {

package/dist/cjs/api/resources/authtoken/errors/UnauthorizedError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/authtoken/resources/auth/client/Client.d.ts

@@ -10,7 +10,7 @@ export declare namespace Auth {
         /** Specify a custom URL to connect the client to. */
         baseUrl?: core.Supplier<string>;
         /** Additional headers to include in requests. */
-        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
+        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
         fetcher?: core.FetchFunction;
     }
     interface RequestOptions {
@@ -23,7 +23,7 @@ export declare namespace Auth {
         /** Additional query string parameters to include in the request. */
         queryParams?: Record<string, unknown>;
         /** Additional headers to include in the request. */
-        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
+        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
     }
 }
 export declare class Auth {

package/dist/cjs/api/resources/authtoken/resources/auth/client/Client.js

@@ -133,7 +133,7 @@ class Auth {
             }
             const basicAuthHeader = core.BasicAuth.toAuthorizationHeader({
                 username: request.username,
-                password: request.password
+                password: request.password,
             });
             if (!basicAuthHeader) {
                 throw new Error("Failed to create basic auth header from username/password");

package/dist/cjs/api/resources/authtoken/resources/auth/client/requests/AuthGenerateTokenRequest.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 /**
  * @example
  *     {

package/dist/cjs/api/resources/authtoken/resources/auth/client/requests/AuthGenerateTokenRequest.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/authtoken/resources/auth/types/AuthGenerateTokenResponse.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface AuthGenerateTokenResponse {
     /** JWT token to be used for subsequent authenticated requests */
     token: string;

package/dist/cjs/api/resources/authtoken/resources/auth/types/AuthGenerateTokenResponse.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/authtoken/types/BadRequestErrorBody.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface BadRequestErrorBody {
     code?: number;
     message?: string;

package/dist/cjs/api/resources/authtoken/types/BadRequestErrorBody.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/authtoken/types/UnauthorizedErrorBody.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface UnauthorizedErrorBody {
     code?: number;
     message?: string;

package/dist/cjs/api/resources/authtoken/types/UnauthorizedErrorBody.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/cohort/client/Client.d.ts

@@ -1,35 +1,15 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-import * as environments from "../../../../environments.js";
+import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.js";
 import * as core from "../../../../core/index.js";
 import * as phenoml from "../../../index.js";
 export declare namespace Cohort {
-    interface Options {
-        environment?: core.Supplier<environments.phenomlEnvironment | string>;
-        /** Specify a custom URL to connect the client to. */
-        baseUrl?: core.Supplier<string>;
-        token: core.Supplier<core.BearerToken>;
-        /** Additional headers to include in requests. */
-        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
-        fetcher?: core.FetchFunction;
+    interface Options extends BaseClientOptions {
     }
-    interface RequestOptions {
-        /** The maximum time to wait for a response in seconds. */
-        timeoutInSeconds?: number;
-        /** The number of times to retry the request. Defaults to 2. */
-        maxRetries?: number;
-        /** A hook to abort the request. */
-        abortSignal?: AbortSignal;
-        /** Additional query string parameters to include in the request. */
-        queryParams?: Record<string, unknown>;
-        /** Additional headers to include in the request. */
-        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
+    interface RequestOptions extends BaseRequestOptions {
     }
 }
 export declare class Cohort {
     protected readonly _options: Cohort.Options;
-    constructor(_options: Cohort.Options);
+    constructor(_options?: Cohort.Options);
     /**
      * Converts natural language text into structured FHIR search queries for patient cohort analysis
      *
@@ -47,5 +27,5 @@ export declare class Cohort {
      */
     analyze(request: phenoml.cohort.CohortRequest, requestOptions?: Cohort.RequestOptions): core.HttpResponsePromise<phenoml.cohort.CohortResponse>;
     private __analyze;
-    protected _getAuthorizationHeader(): Promise<string>;
+    protected _getAuthorizationHeader(): Promise<string | undefined>;
 }

package/dist/cjs/api/resources/cohort/client/Client.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);
@@ -52,7 +50,7 @@ const phenoml = __importStar(require("../../../index.js"));
 const headers_js_1 = require("../../../../core/headers.js");
 const errors = __importStar(require("../../../../errors/index.js"));
 class Cohort {
-    constructor(_options) {
+    constructor(_options = {}) {
         this._options = _options;
     }
     /**
@@ -75,7 +73,7 @@ class Cohort {
     }
     __analyze(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "cohort"),
@@ -85,8 +83,8 @@ class Cohort {
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
                 body: request,
-                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
-                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
+                maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
             });
             if (_response.ok) {
@@ -127,7 +125,11 @@ class Cohort {
     }
     _getAuthorizationHeader() {
         return __awaiter(this, void 0, void 0, function* () {
-            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
+            const bearer = yield core.Supplier.get(this._options.token);
+            if (bearer != null) {
+                return `Bearer ${bearer}`;
+            }
+            return undefined;
         });
     }
 }

package/dist/cjs/api/resources/cohort/client/requests/CohortRequest.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 /**
  * @example
  *     {

package/dist/cjs/api/resources/cohort/client/requests/CohortRequest.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/cohort/errors/BadRequestError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class BadRequestError extends errors.phenomlError {

package/dist/cjs/api/resources/cohort/errors/BadRequestError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/cohort/errors/InternalServerError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class InternalServerError extends errors.phenomlError {

package/dist/cjs/api/resources/cohort/errors/InternalServerError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/cohort/errors/UnauthorizedError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as errors from "../../../../errors/index.js";
 import * as core from "../../../../core/index.js";
 export declare class UnauthorizedError extends errors.phenomlError {

package/dist/cjs/api/resources/cohort/errors/UnauthorizedError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);

package/dist/cjs/api/resources/cohort/types/CohortResponse.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as phenoml from "../../../index.js";
 export interface CohortResponse {
     /** Whether the cohort analysis was successful */

package/dist/cjs/api/resources/cohort/types/CohortResponse.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/cohort/types/SearchConcept.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export interface SearchConcept {
     /** The FHIR resource type for this search concept */
     resource_type?: string;

package/dist/cjs/api/resources/cohort/types/SearchConcept.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/client/Client.d.ts

@@ -1,35 +1,15 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-import * as environments from "../../../../environments.js";
+import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.js";
 import * as core from "../../../../core/index.js";
 import * as phenoml from "../../../index.js";
 export declare namespace Construe {
-    interface Options {
-        environment?: core.Supplier<environments.phenomlEnvironment | string>;
-        /** Specify a custom URL to connect the client to. */
-        baseUrl?: core.Supplier<string>;
-        token: core.Supplier<core.BearerToken>;
-        /** Additional headers to include in requests. */
-        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
-        fetcher?: core.FetchFunction;
+    interface Options extends BaseClientOptions {
     }
-    interface RequestOptions {
-        /** The maximum time to wait for a response in seconds. */
-        timeoutInSeconds?: number;
-        /** The number of times to retry the request. Defaults to 2. */
-        maxRetries?: number;
-        /** A hook to abort the request. */
-        abortSignal?: AbortSignal;
-        /** Additional query string parameters to include in the request. */
-        queryParams?: Record<string, unknown>;
-        /** Additional headers to include in the request. */
-        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
+    interface RequestOptions extends BaseRequestOptions {
     }
 }
 export declare class Construe {
     protected readonly _options: Construe.Options;
-    constructor(_options: Construe.Options);
+    constructor(_options?: Construe.Options);
     /**
      * Upload a custom medical code system with codes and descriptions for use in code extraction.
      * Upon upload, construe generates embeddings for all of the codes in the code system and stores them in the vector database so you can
@@ -90,5 +70,5 @@ export declare class Construe {
      */
     cohort(request: phenoml.construe.ConstrueCohortRequest, requestOptions?: Construe.RequestOptions): core.HttpResponsePromise<phenoml.construe.ConstrueCohortResponse>;
     private __cohort;
-    protected _getAuthorizationHeader(): Promise<string>;
+    protected _getAuthorizationHeader(): Promise<string | undefined>;
 }

package/dist/cjs/api/resources/construe/client/Client.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);
@@ -52,7 +50,7 @@ const phenoml = __importStar(require("../../../index.js"));
 const headers_js_1 = require("../../../../core/headers.js");
 const errors = __importStar(require("../../../../errors/index.js"));
 class Construe {
-    constructor(_options) {
+    constructor(_options = {}) {
         this._options = _options;
     }
     /**
@@ -82,7 +80,7 @@ class Construe {
     }
     __uploadCodeSystem(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "construe/upload"),
@@ -92,8 +90,8 @@ class Construe {
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
                 body: request,
-                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
-                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
+                maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
             });
             if (_response.ok) {
@@ -160,7 +158,7 @@ class Construe {
     }
     __extractCodes(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "construe/extract"),
@@ -170,8 +168,8 @@ class Construe {
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
                 body: request,
-                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
-                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
+                maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
             });
             if (_response.ok) {
@@ -233,7 +231,7 @@ class Construe {
     }
     __cohort(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "construe/cohort"),
@@ -243,8 +241,8 @@ class Construe {
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
                 body: request,
-                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
-                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
+                maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
             });
             if (_response.ok) {
@@ -288,7 +286,11 @@ class Construe {
     }
     _getAuthorizationHeader() {
         return __awaiter(this, void 0, void 0, function* () {
-            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
+            const bearer = yield core.Supplier.get(this._options.token);
+            if (bearer != null) {
+                return `Bearer ${bearer}`;
+            }
+            return undefined;
         });
     }
 }

package/dist/cjs/api/resources/construe/client/requests/ConstrueCohortRequest.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 /**
  * @example
  *     {

package/dist/cjs/api/resources/construe/client/requests/ConstrueCohortRequest.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/client/requests/ExtractRequest.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as phenoml from "../../../../index.js";
 /**
  * @example

package/dist/cjs/api/resources/construe/client/requests/ExtractRequest.js

@@ -1,5 +1,3 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/client/requests/UploadRequest.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 /**
  * @example
  *     {
@@ -29,12 +26,10 @@ export interface UploadRequest {
     defn_col?: string;
 }
 export declare namespace UploadRequest {
-    /**
-     * Format of the uploaded file
-     */
-    type Format = "json" | "csv";
+    /** Format of the uploaded file */
     const Format: {
         readonly Json: "json";
         readonly Csv: "csv";
     };
+    type Format = (typeof Format)[keyof typeof Format];
 }