paperlint 10.3.0 → 10.4.1

package/dist/domain/study-mode.d.ts.map

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package/dist/domain/study-mode.js

@@ -0,0 +1,45 @@
+/**
+ * A STUDY'S MODE — how its outcomes are kept from the decisions about its inputs. A measurement study
+ * declares exactly one (docs/design/study-modes.md):
+ *
+ *   decide_before_run   the default: the author's decisions on the inputs (exclusions, veto, the
+ *                       sample's approval) are committed BEFORE any output exists. No key, no extra
+ *                       tool: git's history is the proof of order, and
+ *                       `repro/outputs-before-decision` re-checks it on every lint.
+ *   exploratory         no gate: the study is exploratory and is reported as such, with its reason.
+ *
+ * "None" and "two at once" cannot be written: the plan holds one `mode`, a union on its `kind`, and a
+ * measurement study's plan is not ready without it (the parser, `src/adapters/study-registry/`).
+ *
+ * Paths: `outputs` are globs relative to the study's folder (the study's results live there); the
+ * decision's `file` is relative to the PAPER's folder, so a decision may live beside the study or
+ * anywhere in the paper (`research/decisions.md`). Pure.
+ */
+import { posix } from "node:path";
+import { REPRO_DIR } from "./repro-layout.js";
+/**
+ * The kinds of study whose plan must declare a mode: the ones that measure. A spike, a tool, a data
+ * set, an artifact or a salvage may omit it.
+ */
+export const MODE_REQUIRED = ["measurement"];
+/** Whether a study of `kind` must declare its mode. */
+export const needsMode = (kind) => MODE_REQUIRED.includes(kind);
+/** `paperPath` relative to the study folder `folder`, when it lies inside it; else null. */
+export const inStudy = (folder, paperPath) => {
+    const prefix = `${REPRO_DIR}/${folder}/`;
+    const n = posix.normalize(paperPath);
+    return n.startsWith(prefix) ? n.slice(prefix.length) : null;
+};
+/** Whether the file at `path` (relative to the study's folder) is one of `outputs`. */
+export const isOutput = (outputs, path) => outputs.some((g) => posix.matchesGlob(path, g));
+/**
+ * The output glob that matches the study's own decision file, when the file lies in the study's
+ * folder: the decision would be "produced" by the run it gates.
+ */
+export const decisionAsOutput = (folder, m) => {
+    const rel = inStudy(folder, m.decision.file);
+    return rel === null
+        ? null
+        : (m.outputs.find((g) => posix.matchesGlob(rel, g)) ?? null);
+};
+//# sourceMappingURL=study-mode.js.map

package/dist/domain/study-mode.js.map

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package/dist/domain/study-registry.d.ts

@@ -1,4 +1,6 @@
 import { STUDIES_FILE } from "./repro-layout.ts";
+import { type StudyMode } from "./study-mode.ts";
+import { type IndexHistory } from "./index-columns.ts";
 /** The registry, at the top of the paper's `repro/`; the layout allows it there. */
 export { STUDIES_FILE };
 export declare const STUDY_KINDS: readonly ["measurement", "spike", "tooling", "data", "artifact", "salvage"];
@@ -115,6 +117,11 @@ export interface StudyPlan {
     readonly author_check: AuthorCheck | null;
     /** The paper's own keys: hypotheses, models, budget … Kept, never read; none is a plan field. */
     readonly extra?: Readonly<Record<string, unknown>> | undefined;
+    /**
+     * How the outcomes are kept from the decisions on the inputs: decided before the run, or
+     * exploratory (src/domain/study-mode.ts). A measurement study's plan is not ready without it.
+     */
+    readonly mode?: StudyMode | undefined;
 }
 /**
  * How the sample is drawn from the population: a seeded draw, whose seed is part of it, or all of
@@ -132,13 +139,13 @@ export type Draw = {
     readonly method: string;
 };
 /** The top-level fields of a plan: none of them may be a key of `extra`. */
-export declare const PLAN_FIELDS: readonly ["question", "population", "arms", "primary_outcome", "author_check", "extra"];
+export declare const PLAN_FIELDS: readonly ["question", "population", "arms", "primary_outcome", "author_check", "extra", "mode"];
 /** A plan with empty required texts: the author has not approved it. */
 export type DraftPlan = StudyPlan & {
     readonly author_check: null;
 };
 /** The texts a plan must fill before the study runs, in the order they are named. */
-export declare const PLAN_TEXT_FIELDS: readonly ["question", "population.source", "population.draw.method", "primary_outcome"];
+export declare const PLAN_TEXT_FIELDS: readonly ["question", "population.source", "population.draw.method", "primary_outcome", "mode", "mode.outputs", "mode.decision.file", "mode.decision.note", "mode.reason"];
 export type PlanTextField = (typeof PLAN_TEXT_FIELDS)[number];
 /**
  * A plan's text, parsed: ready (every required text filled), a draft (its empty texts named, and
@@ -155,15 +162,39 @@ export type ParsedPlan = {
     readonly kind: "unreadable";
     readonly why: string;
 };
+/**
+ * What a path inside a study's folder is, found without reading it or following a link: a regular
+ * file, nothing, or a path that passes through a symbolic link (`link`: the first one, relative to
+ * the folder).
+ */
+export type Located = {
+    readonly kind: "file";
+} | {
+    readonly kind: "absent";
+} | {
+    readonly kind: "linked";
+    readonly link: string;
+};
 /** What a study's folder holds of the plan its row names: absent, or what its text parsed to. */
 export type PlanState = {
     readonly kind: "absent";
+}
+/** The plan's path passes through a symbolic link, `link` (relative to the folder); never read. */
+ | {
+    readonly kind: "linked";
+    readonly link: string;
 } | ParsedPlan;
+/** The decision file `paperlint studies new` names for a study in `folder`, relative to the paper. */
+export declare const decisionPath: (folder: string) => string;
+/** The decision file's name, beside the plan. */
+export declare const DECISION_FILE = "decision.md";
 /**
- * The plan `paperlint studies new` writes: every field present, its value to fill. Its draw is of
- * all the population (a census); a sampled study changes it to `{ "kind": "seeded", "method", "seed" }`.
+ * The plan `paperlint studies new` writes for a study of `kind` in `folder`: every field present, its
+ * value to fill. Its draw is of all the population (a census); a sampled study changes it to
+ * `{ "kind": "seeded", "method", "seed" }`. A study that must declare its mode gets the default one,
+ * decided before the run, its decision file named and its outputs and note to fill.
  */
-export declare const planTemplate: () => DraftPlan;
+export declare const planTemplate: (kind: StudyKind, folder: string) => DraftPlan;
 /** A plan's text as `paperlint studies new` writes it: JSON, two-space indented, a final newline. */
 export declare const planText: (p: StudyPlan) => string;
 /** A registry's text, parsed: the registry, or the one reason it is not one. */
@@ -191,8 +222,8 @@ export interface StudyInput {
     readonly registry: RegistryState;
     /** `repro/README.md`'s text; null when there is none. */
     readonly readme: string | null;
-    /** Each `<folder>/<result_file>` of the registry that is a file. */
-    readonly existingResults: ReadonlySet<string>;
+    /** What each `<folder>/<result_file>` of the registry is, as `locate` found it; one not listed is absent. */
+    readonly results: ReadonlyMap<string, Located>;
     /** The plan each row names, by `<folder>/<plan>`; one not listed is absent. */
     readonly plans: ReadonlyMap<string, PlanState>;
 }
@@ -239,6 +270,12 @@ export type StudyFinding = {
     readonly id: string;
     readonly path: string;
     readonly why: "missing" | "outside";
+} | {
+    readonly problem: "result-file";
+    readonly id: string;
+    readonly path: string;
+    readonly why: "linked";
+    readonly link: string;
 } | {
     readonly problem: "no-successor";
     readonly id: string;
@@ -273,6 +310,12 @@ export type StudyFinding = {
     readonly id: string;
     readonly path: string;
     readonly why: "missing" | "outside";
+} | {
+    readonly problem: "bad-plan";
+    readonly id: string;
+    readonly path: string;
+    readonly why: "linked";
+    readonly link: string;
 } | {
     readonly problem: "bad-plan";
     readonly id: string;
@@ -313,33 +356,94 @@ export declare function nextStudyId(r: StudyRegistry): string;
 export declare const studySlug: (title: string) => string;
 /** The number of words in a title. */
 export declare const titleWords: (title: string) => number;
+/**
+ * Whether `path` stays inside the folder it is relative to. A backslash or a Windows absolute path
+ * is refused outright: `posix.normalize` does not resolve `..\\`, while the host's `join` may.
+ */
+export declare const isInside: (path: string) => boolean;
+/**
+ * Whether `folder` names one folder directly inside `repro/`: not empty, not `.` or `..`, and no
+ * separator or NUL. Every command and rule that reads a study's folder reads only such a one: a row
+ * naming `../x` would have them read and write outside the paper.
+ */
+export declare const isFolderName: (folder: string) => boolean;
+/**
+ * The rows of a registry that carry an id: exactly one, none, or several. The one way to address a
+ * study by its id — a caller that wants "the study P1-S01" gets a row only when there is exactly one,
+ * so no command can act on the first of two rows by accident. A registry may still hold two rows of
+ * one id (`repro/study-registered` reports it); this says so instead of choosing.
+ */
+export type StudyLookup = {
+    readonly kind: "one";
+    readonly row: Study;
+} | {
+    readonly kind: "none";
+} | {
+    readonly kind: "ambiguous";
+    readonly rows: readonly Study[];
+};
+/** The rows of a registry that was read; none when there is no registry, or it does not parse. */
+export declare const studiesOf: (state: RegistryState) => readonly Study[];
+/** The rows of `studies` whose id is `id`, as a `StudyLookup`. */
+export declare const studyById: (studies: readonly Study[], id: string) => StudyLookup;
+/**
+ * The key a path inside a study's folder is held under: `<folder>/<path>`. A plan (`StudyInput.plans`,
+ * `IndexInput.plans`), the history of its study (`IndexInput.history`) and a result file
+ * (`StudyInput.results`) are all found by it.
+ */
+export declare const folderKey: (folder: string, path: string) => string;
 /**
  * The `<folder>/<plan>` of each row whose plan lies inside its folder: the files the judge needs read
  * (`StudyInput.plans`). A plan outside its folder is reported without being read.
  */
 export declare const planKeys: (r: StudyRegistry) => readonly string[];
+/** A plan a row names: where it is read from, and the kind of the study — what its parser needs. */
+export interface PlanRef {
+    readonly folder: string;
+    readonly plan: string;
+    readonly kind: StudyKind;
+}
+/** Each plan `planKeys` names. */
+export declare const planRefs: (r: StudyRegistry) => readonly PlanRef[];
 /**
  * Every defect of a paper's study registry, in a fixed order: the registry itself; the unregistered
  * folders; each row's; the index. Pure.
  */
 export declare function judgeStudies(input: StudyInput): readonly StudyFinding[];
+/**
+ * What the index is generated from beyond the registry: the plans by `<folder>/<plan>` (as
+ * `StudyInput.plans`), and the history of each decide-first study by the same key. A study with no
+ * history listed shows `not read` — the lint, which never compares those columns, asks none.
+ */
+export interface IndexInput {
+    readonly plans: ReadonlyMap<string, PlanState>;
+    readonly history: ReadonlyMap<string, IndexHistory>;
+}
 /**
  * The index of `r`: a markdown table, a row per study in registry order, each column padded to its
  * widest cell (at least 3), the way prettier writes a table — so formatting the README leaves it as
  * it is.
  */
-export declare function studyIndex(r: StudyRegistry): string;
-/** Whether `readme` holds the index of `r`, whatever padding a formatter gave its table. */
-export declare function indexInSync(readme: string | null, r: StudyRegistry): boolean;
+export declare function studyIndex(r: StudyRegistry, at: IndexInput): string;
+/**
+ * Whether `readme` holds the index of `r`, whatever padding a formatter gave its table and whatever
+ * its two columns read from git say: what `repro/study-registered` checks.
+ */
+export declare const indexInSync: (readme: string | null, r: StudyRegistry, at: IndexInput) => boolean;
+/**
+ * Whether `readme` holds the index of `r` in every column, whatever its padding: when it does,
+ * `studies index` leaves the README as it is, so the padding a formatter gave the table stays.
+ */
+export declare const indexCurrent: (readme: string | null, r: StudyRegistry, at: IndexInput) => boolean;
 /** The index between its markers, a blank line on each side. */
-export declare const indexBlock: (r: StudyRegistry) => string;
+export declare const indexBlock: (r: StudyRegistry, at: IndexInput) => string;
 /** The text between the markers of `readme`; null when it has no begin marker followed by an end one. */
 export declare function embeddedIndex(readme: string): string | null;
 /**
  * `readme` with its index regenerated from `r`: the block replaced in place, appended when the README
  * has none, a README of its own when there is none.
  */
-export declare function withIndex(readme: string | null, r: StudyRegistry): string;
+export declare function withIndex(readme: string | null, r: StudyRegistry, at: IndexInput): string;
 /** The registry's text as `paperlint studies new` writes it: JSON, two-space indented, a final newline. */
 export declare const registryText: (r: StudyRegistry) => string;
 /** The one text a finding is reported with: what is wrong, what to do, and the rule's page. */

package/dist/domain/study-registry.d.ts.map

@@ -1 +1 @@
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