paperlint 10.3.0 → 10.4.1

package/dist/adapters/study-registry/index.d.ts

@@ -12,9 +12,14 @@
  * Its texts may be empty — the template's are — and the parser says which: a plan comes out ready or
  * a draft naming its empty texts, so nothing downstream looks at a text again. A plan still named
  * `prereg.json` has a loose schema of its own.
+ *
+ * A plan's `mode` (docs/design/study-modes.md) is parsed here too, strictly, a union on its `kind`:
+ * one mode at most, a glob that leaves the study's folder or a decision outside the paper refused,
+ * and a measurement's plan ready only with a mode.
  */
 import { z } from "zod";
-import { type Approval, type AuthorCheck, type Measurement, type ParsedPlan, type ParsedRegistry, type Requirement, type Study, type StudyPlan, type StudyRegistry } from "../../domain/study-registry.ts";
+import { type Approval, type AuthorCheck, type Measurement, type ParsedPlan, type ParsedRegistry, type Requirement, type Study, type PlanTextField, type StudyKind, type StudyPlan, type StudyRegistry } from "../../domain/study-registry.ts";
+import { type Decision, type StudyMode } from "../../domain/study-mode.ts";
 import type { StudyRegistryCodec } from "../../ports/study-registry-codec.ts";
 declare const study: z.ZodObject<{
     id: z.ZodString;
@@ -141,6 +146,22 @@ declare const authorCheck: z.ZodObject<{
     date: z.ZodISODate;
     quote: z.ZodString;
 }, z.core.$strict>;
+declare const decisionShape: z.ZodObject<{
+    file: z.ZodString;
+    note: z.ZodString;
+}, z.core.$strict>;
+/** How the outcomes are kept from the decisions: exactly one mode, by its `kind`. */
+declare const mode: z.ZodDiscriminatedUnion<[z.ZodObject<{
+    kind: z.ZodLiteral<"decide_before_run">;
+    outputs: z.ZodArray<z.ZodString>;
+    decision: z.ZodObject<{
+        file: z.ZodString;
+        note: z.ZodString;
+    }, z.core.$strict>;
+}, z.core.$strict>, z.ZodObject<{
+    kind: z.ZodLiteral<"exploratory">;
+    reason: z.ZodString;
+}, z.core.$strict>], "kind">;
 /** A plan's shape: closed at every level; the paper's own keys go in `extra`. Null is the one "none". */
 declare const planShape: z.ZodObject<{
     question: z.ZodString;
@@ -165,6 +186,17 @@ declare const planShape: z.ZodObject<{
         quote: z.ZodString;
     }, z.core.$strict>>;
     extra: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+    mode: z.ZodOptional<z.ZodDiscriminatedUnion<[z.ZodObject<{
+        kind: z.ZodLiteral<"decide_before_run">;
+        outputs: z.ZodArray<z.ZodString>;
+        decision: z.ZodObject<{
+            file: z.ZodString;
+            note: z.ZodString;
+        }, z.core.$strict>;
+    }, z.core.$strict>, z.ZodObject<{
+        kind: z.ZodLiteral<"exploratory">;
+        reason: z.ZodString;
+    }, z.core.$strict>], "kind">>;
 }, z.core.$strict>;
 /**
  * A plan under its old name, `prereg.json`, written by hand before the plan had a schema: open at
@@ -216,8 +248,8 @@ declare const legacyAsPlan: z.ZodPipe<z.ZodObject<{
 type ReadyOrDraft = Exclude<ParsedPlan, {
     readonly kind: "unreadable";
 }>;
-/** A `plan.json`: strict, then ready or draft. */
-declare const plan: z.ZodPipe<z.ZodObject<{
+/** A `plan.json` of a study of `kind`: strict, then ready or draft — a measurement's ready only with its mode. */
+declare const planFor: (kind: StudyKind) => z.ZodPipe<z.ZodObject<{
     question: z.ZodString;
     population: z.ZodObject<{
         source: z.ZodString;
@@ -240,13 +272,24 @@ declare const plan: z.ZodPipe<z.ZodObject<{
         quote: z.ZodString;
     }, z.core.$strict>>;
     extra: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+    mode: z.ZodOptional<z.ZodDiscriminatedUnion<[z.ZodObject<{
+        kind: z.ZodLiteral<"decide_before_run">;
+        outputs: z.ZodArray<z.ZodString>;
+        decision: z.ZodObject<{
+            file: z.ZodString;
+            note: z.ZodString;
+        }, z.core.$strict>;
+    }, z.core.$strict>, z.ZodObject<{
+        kind: z.ZodLiteral<"exploratory">;
+        reason: z.ZodString;
+    }, z.core.$strict>], "kind">>;
 }, z.core.$strict>, z.ZodTransform<{
     readonly kind: "ready";
     readonly plan: StudyPlan;
 } | {
     readonly kind: "draft";
     readonly plan: import("../../domain/study-registry.ts").DraftPlan;
-    readonly empty: readonly import("../../domain/study-registry.ts").PlanTextField[];
+    readonly empty: readonly PlanTextField[];
 }, {
     question: string;
     population: {
@@ -270,8 +313,23 @@ declare const plan: z.ZodPipe<z.ZodObject<{
         quote: string;
     } | null;
     extra?: Record<string, unknown> | undefined;
+    mode?: {
+        kind: "decide_before_run";
+        outputs: string[];
+        decision: {
+            file: string;
+            note: string;
+        };
+    } | {
+        kind: "exploratory";
+        reason: string;
+    } | undefined;
 }>>;
-/** A `prereg.json`: loose, mapped onto the plan, then ready or draft. */
+/**
+ * A `prereg.json`: loose, mapped onto the plan, then ready or draft. Written before modes existed, it
+ * is never asked for one; `repro/study-plan-name` already asks to move it to `plan.json`, where the
+ * strict parser does.
+ */
 declare const legacyPlan: z.ZodPipe<z.ZodPipe<z.ZodObject<{
     question: z.ZodString;
     population: z.ZodObject<{
@@ -318,7 +376,7 @@ declare const legacyPlan: z.ZodPipe<z.ZodPipe<z.ZodObject<{
 } | {
     readonly kind: "draft";
     readonly plan: import("../../domain/study-registry.ts").DraftPlan;
-    readonly empty: readonly import("../../domain/study-registry.ts").PlanTextField[];
+    readonly empty: readonly PlanTextField[];
 }, StudyPlan>>;
 /** `T`, readonly all the way down: zod's outputs are mutable, the domain's are not. */
 type Frozen<T> = T extends readonly (infer U)[] ? readonly Frozen<U>[] : T extends object ? {
@@ -341,15 +399,17 @@ export type SchemasAreTheDomain = [
     Same<z.output<typeof authorCheck>, AuthorCheck>,
     Same<z.output<typeof planShape>, StudyPlan>,
     Same<z.output<typeof legacyAsPlan>, StudyPlan>,
-    Same<z.output<typeof plan>, ReadyOrDraft>,
-    Same<z.output<typeof legacyPlan>, ReadyOrDraft>
+    Same<z.output<ReturnType<typeof planFor>>, ReadyOrDraft>,
+    Same<z.output<typeof legacyPlan>, ReadyOrDraft>,
+    Same<z.output<typeof mode>, StudyMode>,
+    Same<z.output<typeof decisionShape>, Decision>
 ] extends true[] ? true : never;
 /** The proof is used, so the build checks it. */
 export declare const SCHEMAS_ARE_THE_DOMAIN: SchemasAreTheDomain;
 /** A `studies.json`'s text, parsed once at the boundary: the registry, or every reason it is not one. */
 export declare function parseStudyRegistry(text: string): ParsedRegistry;
-/** A `plan.json`: strict. */
-export declare const parseStudyPlan: (text: string) => ParsedPlan;
+/** A `plan.json` of a study of `kind`: strict. */
+export declare const parseStudyPlan: (text: string, kind: StudyKind) => ParsedPlan;
 /** A plan still named `prereg.json`: loose, read only when a row names it. */
 export declare const parseLegacyPlan: (text: string) => ParsedPlan;
 export declare const studyRegistryCodec: StudyRegistryCodec;

package/dist/adapters/study-registry/index.d.ts.map

@@ -1 +1 @@
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package/dist/adapters/study-registry/index.js

@@ -12,9 +12,15 @@
  * Its texts may be empty — the template's are — and the parser says which: a plan comes out ready or
  * a draft naming its empty texts, so nothing downstream looks at a text again. A plan still named
  * `prereg.json` has a loose schema of its own.
+ *
+ * A plan's `mode` (docs/design/study-modes.md) is parsed here too, strictly, a union on its `kind`:
+ * one mode at most, a glob that leaves the study's folder or a decision outside the paper refused,
+ * and a measurement's plan ready only with a mode.
  */
 import { z } from "zod";
+import { README } from "../../domain/repro-layout.js";
 import { IN_PAPER, MEASUREMENT_ROLES, PLAN_FIELDS, PLAN_TEXT_FIELDS, PREFIX_PATTERN, STUDY_KINDS, STUDY_STATUSES, } from "../../domain/study-registry.js";
+import { needsMode, } from "../../domain/study-mode.js";
 const study = z.looseObject({
     id: z.string(),
     folder: z.string(),
@@ -95,6 +101,48 @@ const extra = z.record(z.string(), z.unknown()).superRefine((e, ctx) => {
         });
     });
 });
+/** Every value of `values` once: a repeat is an error naming it. */
+const once = (what) => (values, ctx) => {
+    repeated(values).forEach((v) => {
+        ctx.addIssue({
+            code: "custom",
+            message: `${what} «${v}» is listed more than once`,
+        });
+    });
+};
+/** Whether `p` is a relative path that stays where it starts: no backslash, not absolute, no `..`. */
+const staysInside = (p) => !p.includes("\\") && !p.startsWith("/") && !p.split("/").includes("..");
+/** An output glob, relative to the study's folder: inside it, and never the study's README. */
+const inFolder = z
+    .string()
+    .min(1)
+    .refine((p) => staysInside(p) && p !== README, `is not a path inside the study's folder, or names its ${README}`);
+/**
+ * Whether `p` names a file by one or more names joined by `/`, none empty, `.` or `..`: never the
+ * paper's folder itself (`.`) nor a path ending in `/`. Whether a name is a directory on disk is the
+ * gate's and the order rule's to see.
+ */
+const namesAFile = (p) => p.split("/").every((n) => n !== "" && n !== "." && n !== "..");
+/**
+ * A decision file, relative to the PAPER's folder: inside it, and a file's path. Empty in a draft (the
+ * parser names it).
+ */
+const inPaper = z
+    .string()
+    .refine(staysInside, "is not a path inside the paper's folder")
+    .refine((p) => p === "" || !staysInside(p) || namesAFile(p), "is not a path to a file inside the paper's folder: one or more names joined by /, none empty, . or ..");
+const decisionShape = z.strictObject({ file: inPaper, note: z.string() });
+/** The output globs: each once; none yet in a draft. */
+const outputs = z.array(inFolder).superRefine(once("the output"));
+/** How the outcomes are kept from the decisions: exactly one mode, by its `kind`. */
+const mode = z.discriminatedUnion("kind", [
+    z.strictObject({
+        kind: z.literal("decide_before_run"),
+        outputs,
+        decision: decisionShape,
+    }),
+    z.strictObject({ kind: z.literal("exploratory"), reason: z.string() }),
+]);
 /** A plan's shape: closed at every level; the paper's own keys go in `extra`. Null is the one "none". */
 const planShape = z.strictObject({
     question: z.string(),
@@ -103,6 +151,7 @@ const planShape = z.strictObject({
     primary_outcome: z.string(),
     author_check: authorCheck.nullable(),
     extra: extra.optional(),
+    mode: mode.optional(),
 });
 /**
  * A plan under its old name, `prereg.json`, written by hand before the plan had a schema: open at
@@ -151,16 +200,37 @@ const readyTexts = z.object({
     }),
     primary_outcome: filled,
 });
+/** Whether `t` says something. */
+const says = (t) => /\S/u.test(t);
+/**
+ * The mode's texts that are still empty, by their field: the mode itself when a study of `kind` must
+ * declare one and the plan does not, a decide-first mode's outputs and decision, an exploratory reason.
+ */
+const modeEmpties = (p, kind) => {
+    const m = p.mode;
+    if (m === undefined)
+        return needsMode(kind) ? ["mode"] : [];
+    if (m.kind === "exploratory")
+        return says(m.reason) ? [] : ["mode.reason"];
+    return PLAN_TEXT_FIELDS.filter((f) => (f === "mode.outputs" && m.outputs.length === 0) ||
+        (f === "mode.decision.file" && !says(m.decision.file)) ||
+        (f === "mode.decision.note" && !says(m.decision.note)));
+};
 /**
  * A parsed plan, ready when every required text is filled, else a draft naming the empty ones. A
  * draft that carries the author's check is no plan: the author approved one with empty texts.
  */
-const readyOrDraft = (p, ctx) => {
+const readyOrDraft = (kind) => (p, ctx) => {
     const checked = readyTexts.safeParse(p);
-    if (checked.success)
+    const paths = checked.success
+        ? []
+        : checked.error.issues.map((i) => i.path.join("."));
+    const empty = [
+        ...PLAN_TEXT_FIELDS.filter((f) => paths.includes(f)),
+        ...modeEmpties(p, kind),
+    ];
+    if (empty.length === 0)
         return { kind: "ready", plan: p };
-    const paths = checked.error.issues.map((i) => i.path.join("."));
-    const empty = PLAN_TEXT_FIELDS.filter((f) => paths.includes(f));
     if (p.author_check === null)
         return { kind: "draft", plan: { ...p, author_check: null }, empty };
     ctx.addIssue({
@@ -170,10 +240,14 @@ const readyOrDraft = (p, ctx) => {
     });
     return z.NEVER;
 };
-/** A `plan.json`: strict, then ready or draft. */
-const plan = planShape.transform(readyOrDraft);
-/** A `prereg.json`: loose, mapped onto the plan, then ready or draft. */
-const legacyPlan = legacyAsPlan.transform(readyOrDraft);
+/** A `plan.json` of a study of `kind`: strict, then ready or draft — a measurement's ready only with its mode. */
+const planFor = (kind) => planShape.transform(readyOrDraft(kind));
+/**
+ * A `prereg.json`: loose, mapped onto the plan, then ready or draft. Written before modes existed, it
+ * is never asked for one; `repro/study-plan-name` already asks to move it to `plan.json`, where the
+ * strict parser does.
+ */
+const legacyPlan = legacyAsPlan.transform(readyOrDraft("spike"));
 /** The proof is used, so the build checks it. */
 export const SCHEMAS_ARE_THE_DOMAIN = true;
 /** The JSON `text` holds, or undefined when it is not JSON. */
@@ -209,8 +283,8 @@ const planParser = (schema) => (text) => {
         ? parsed.data
         : { kind: "unreadable", why: reasons(parsed.error.issues) };
 };
-/** A `plan.json`: strict. */
-export const parseStudyPlan = planParser(plan);
+/** A `plan.json` of a study of `kind`: strict. */
+export const parseStudyPlan = (text, kind) => planParser(planFor(kind))(text);
 /** A plan still named `prereg.json`: loose, read only when a row names it. */
 export const parseLegacyPlan = planParser(legacyPlan);
 export const studyRegistryCodec = {

package/dist/adapters/study-registry/index.js.map

@@ -1 +1 @@
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package/dist/cli.d.ts.map

@@ -1 +1 @@
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package/dist/cli.js

@@ -89,6 +89,9 @@ import { folderLayoutHook } from "./folder-layout-hook.js";
 import { REPRO_LAYOUT_RULE_LEVELS, reproLayoutRules, } from "./repro-layout-rule.js";
 import { STUDY_REGISTRY_RULE_LEVELS, studyRegistryRules, } from "./study-registry-rule.js";
 import { studyRegistryCodec } from "./adapters/study-registry/index.js";
+import { nodeListEntries, spawnProcess } from "./adapters/node/index.js";
+import { gitHistory } from "./adapters/git/index.js";
+import { ORDER_RULE_LEVELS, outputsBeforeDecisionRules, } from "./outputs-before-decision-rule.js";
 import { runStudies } from "./studies.js";
 import typography from "#eslint-rules/paper-typography";
 import texBuild from "#eslint-rules/tex-build";
@@ -140,6 +143,11 @@ const USAGE = `paperlint — machine-checkable gates for a paper kept in git
                                       index in repro/README.md regenerated
   npx paperlint studies index <paper-dir>
                                       regenerate the index in repro/README.md from repro/studies.json
+  npx paperlint studies gate <paper-dir> <id>
+                                      may the study's run start? For a study decided before its run
+                                      (the default mode), exit 0 only once its decision file is
+                                      committed as it stands, printing the commit and date; else exit
+                                      1 saying why. A runner calls it first: gate … && ./run.sh
   npx paperlint hook <name>           run an editor hook (.claude/settings.json calls this)
   npx paperlint --help
 
@@ -164,7 +172,10 @@ studies:
   --kind <kind>       new: measurement (the default), spike, tooling, data, artifact or salvage.
                       A study's status, result and in_paper are edited in repro/studies.json, its
                       plan in its plan.json; the rule repro/study-registered checks them
-                      (docs/rules/repro/study-registered.md)
+                      (docs/rules/repro/study-registered.md). A measurement's plan declares its
+                      mode: decide_before_run (written by new) or exploratory;
+                      repro/outputs-before-decision checks the order in git
+                      (docs/design/study-modes.md)
 
 submission:
   The venue preset declares the portal — "portal": { "kind": "hotcrp", "url": "<site>" } — and the
@@ -272,18 +283,30 @@ const FRAGMENT_RULES = {
     "future-promise": texBuild["future-promise"],
     "heading-case": REGISTER_AND_CASE_RULES["heading-case"],
 };
+/** `names` of this process's environment, and nothing else of it. */
+const envOf = (names) => (env) => Object.fromEntries(Object.entries(env).filter((e) => names.includes(e[0]) && e[1] !== undefined));
+/** The environment git runs in: PATH, and HOME for its configuration. */
+const gitEnv = envOf(["PATH", "HOME"]);
+/** git's history, as the decide-first rule and the gate read it. */
+const GIT = gitHistory(spawnProcess(), gitEnv(process.env));
 /** What the two layout rules read with: the disk and its directory listings. */
 const LAYOUT_RULE_DEPS = { files: nodeFiles, listDir: nodeListDir };
 /** What `repro/study-registered` and `paperlint studies` read with: the layout's, and the registry's parser. */
-const STUDY_RULE_DEPS = { ...LAYOUT_RULE_DEPS, codec: studyRegistryCodec };
+const STUDY_RULE_DEPS = {
+    ...LAYOUT_RULE_DEPS,
+    entries: nodeListEntries,
+    codec: studyRegistryCodec,
+};
 /** The `repro` plugin's rules, on every `PIPELINE-STATUS.md`: the layout of `repro/`, and its study registry. */
 const REPRO_RULES = {
     ...reproLayoutRules(LAYOUT_RULE_DEPS),
     ...studyRegistryRules(STUDY_RULE_DEPS),
+    ...outputsBeforeDecisionRules({ ...STUDY_RULE_DEPS, git: GIT }),
 };
 const REPRO_RULE_LEVELS = {
     ...REPRO_LAYOUT_RULE_LEVELS,
     ...STUDY_REGISTRY_RULE_LEVELS,
+    ...ORDER_RULE_LEVELS,
 };
 /** Today in this machine's time zone, `YYYY-MM-DD`: the date `paperlint studies new` registers a study on. */
 const today = (now = new Date()) => [
@@ -1285,7 +1308,14 @@ const SIMPLE = {
         title: a.paths[2],
         extra: a.paths.slice(3),
         kind: a.kind,
-    }, { ...STUDY_RULE_DEPS, cwd, today: today(), log, err }),
+    }, {
+        ...STUDY_RULE_DEPS,
+        git: GIT,
+        cwd,
+        today: today(),
+        log,
+        err,
+    }),
     submission: (a, { log, err, cwd }) => runSubmission({
         sub: a.paths[0],
         paperDir: a.paths[1] ?? ".",