paper-search-cli 0.3.0 → 0.3.2

package/dist/services/CitationService.js

@@ -1,237 +1,2 @@
-import axios from 'axios';
-import { RequestCache } from '../utils/RequestCache.js';
-import { RateLimiter } from '../utils/RateLimiter.js';
-import { ErrorHandler } from '../utils/ErrorHandler.js';
-import { TIMEOUTS, USER_AGENT } from '../config/constants.js';
-import { logDebug, logWarn } from '../utils/Logger.js';
-export class CitationService {
-    client;
-    cache;
-    rateLimiter;
-    apiKey;
-    constructor(apiKey) {
-        this.apiKey = apiKey || process.env.SEMANTIC_SCHOLAR_API_KEY;
-        this.client = axios.create({
-            baseURL: 'https://api.semanticscholar.org/graph/v1',
-            timeout: TIMEOUTS.DEFAULT,
-            headers: {
-                'Accept': 'application/json',
-                'User-Agent': USER_AGENT,
-                ...(this.apiKey ? { 'x-api-key': this.apiKey } : {})
-            }
-        });
-        // Semantic Scholar rate limits: 100 req/5min (free), 1000 req/5min (paid)
-        const requestsPerMinute = this.apiKey ? 180 : 18;
-        this.rateLimiter = new RateLimiter({
-            requestsPerSecond: requestsPerMinute / 60,
-            burstCapacity: Math.max(3, Math.floor(requestsPerMinute / 20))
-        });
-        this.cache = new RequestCache({
-            maxSize: 500,
-            ttlMs: 86400000 // 24 hours
-        });
-    }
-    /**
-     * Get citation data for a single paper by ID
-     */
-    async getCitationData(paperId, forceRefresh = false) {
-        try {
-            // Check cache first
-            if (!forceRefresh) {
-                const cacheKey = this.cache.generateKey('citation', paperId, {});
-                const cached = this.cache.get(cacheKey);
-                if (cached) {
-                    return cached;
-                }
-            }
-            await this.rateLimiter.waitForPermission();
-            const fields = [
-                'paperId',
-                'title',
-                'citationCount',
-                'referenceCount',
-                'influentialCitationCount',
-                'year',
-                'authors',
-                'venue',
-                'externalIds',
-                'url'
-            ].join(',');
-            const response = await ErrorHandler.retryWithBackoff(() => this.client.get(`/paper/${paperId}`, {
-                params: { fields }
-            }), { context: 'Semantic Scholar citation lookup' });
-            if (response.status !== 200 || !response.data) {
-                return null;
-            }
-            const data = this.parseCitationData(response.data);
-            // Cache the result
-            const cacheKey = this.cache.generateKey('citation', paperId, {});
-            this.cache.set(cacheKey, data);
-            return data;
-        }
-        catch (error) {
-            logWarn(`Error fetching citation data for ${paperId}:`, error.message);
-            return null;
-        }
-    }
-    /**
-     * Get citation data by DOI
-     */
-    async getCitationDataByDoi(doi, forceRefresh = false) {
-        try {
-            const paperId = `DOI:${doi}`;
-            return await this.getCitationData(paperId, forceRefresh);
-        }
-        catch (error) {
-            logWarn(`Error fetching citation data by DOI ${doi}:`, error.message);
-            return null;
-        }
-    }
-    /**
-     * Get citation data by arXiv ID
-     */
-    async getCitationDataByArxiv(arxivId, forceRefresh = false) {
-        try {
-            const paperId = `ARXIV:${arxivId}`;
-            return await this.getCitationData(paperId, forceRefresh);
-        }
-        catch (error) {
-            logWarn(`Error fetching citation data by arXiv ID ${arxivId}:`, error.message);
-            return null;
-        }
-    }
-    /**
-     * Batch lookup citations for multiple papers
-     */
-    async batchLookup(requests) {
-        const results = new Map();
-        for (const request of requests) {
-            let paperId = null;
-            let key;
-            if (request.paperId) {
-                paperId = request.paperId;
-                key = request.paperId;
-            }
-            else if (request.doi) {
-                paperId = `DOI:${request.doi}`;
-                key = request.doi;
-            }
-            else if (request.arxivId) {
-                paperId = `ARXIV:${request.arxivId}`;
-                key = request.arxivId;
-            }
-            else if (request.title) {
-                key = request.title;
-                // Search by title (not implemented in this version)
-                results.set(key, null);
-                continue;
-            }
-            else {
-                continue;
-            }
-            try {
-                const data = await this.getCitationData(paperId);
-                results.set(key, data);
-            }
-            catch (error) {
-                logDebug(`Error in batch lookup for ${key}:`, error);
-                results.set(key, null);
-            }
-        }
-        return results;
-    }
-    /**
-     * Get references for a paper
-     */
-    async getReferences(paperId, limit = 100) {
-        try {
-            await this.rateLimiter.waitForPermission();
-            const fields = [
-                'paperId',
-                'title',
-                'citationCount',
-                'year',
-                'authors',
-                'venue'
-            ].join(',');
-            const response = await ErrorHandler.retryWithBackoff(() => this.client.get(`/paper/${paperId}/references`, {
-                params: { fields, limit }
-            }), { context: 'Semantic Scholar references lookup' });
-            if (response.status !== 200 || !response.data?.data) {
-                return [];
-            }
-            return response.data.data
-                .map((item) => item.citedPaper)
-                .filter((paper) => paper)
-                .map((paper) => this.parseCitationData(paper));
-        }
-        catch (error) {
-            logWarn(`Error fetching references for ${paperId}:`, error.message);
-            return [];
-        }
-    }
-    /**
-     * Get citations for a paper
-     */
-    async getCitations(paperId, limit = 100) {
-        try {
-            await this.rateLimiter.waitForPermission();
-            const fields = [
-                'paperId',
-                'title',
-                'citationCount',
-                'year',
-                'authors',
-                'venue'
-            ].join(',');
-            const response = await ErrorHandler.retryWithBackoff(() => this.client.get(`/paper/${paperId}/citations`, {
-                params: { fields, limit }
-            }), { context: 'Semantic Scholar citations lookup' });
-            if (response.status !== 200 || !response.data?.data) {
-                return [];
-            }
-            return response.data.data
-                .map((item) => item.citingPaper)
-                .filter((paper) => paper)
-                .map((paper) => this.parseCitationData(paper));
-        }
-        catch (error) {
-            logWarn(`Error fetching citations for ${paperId}:`, error.message);
-            return [];
-        }
-    }
-    /**
-     * Parse Semantic Scholar response to CitationData
-     */
-    parseCitationData(data) {
-        return {
-            paperId: data.paperId,
-            title: data.title,
-            citationCount: data.citationCount || 0,
-            referenceCount: data.referenceCount || 0,
-            influentialCitationCount: data.influentialCitationCount,
-            year: data.year,
-            authors: data.authors?.map((author) => ({
-                name: author.name,
-                authorId: author.authorId
-            })),
-            venue: data.venue,
-            doi: data.externalIds?.DOI,
-            url: data.url
-        };
-    }
-    /**
-     * Get cache statistics
-     */
-    getCacheStats() {
-        return this.cache.getStats();
-    }
-    /**
-     * Clear cache
-     */
-    clearCache() {
-        this.cache.clear();
-    }
-}
-export default CitationService;
+export { CitationService, default } from '../capabilities/citation-expansion/CitationService.js';
 //# sourceMappingURL=CitationService.js.map

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package/dist/services/JournalMetricsService.d.ts

@@ -1,38 +1,3 @@
-interface QueryJournalMetricsOptions {
-    journals: string[];
-    includeRaw?: boolean;
-}
-export interface JournalMetricsRow {
-    journal: string;
-    status: 'found' | 'not_found' | 'error';
-    source: 'easyScholar';
-    message?: string;
-    core: {
-        impact_factor?: string;
-        impact_factor_5y?: string;
-        jcr_quartile?: string;
-        ssci_quartile?: string;
-        jci?: string;
-        cas_base?: string;
-        cas_upgraded?: string;
-        cas_small?: string;
-        cas_top?: string;
-        cas_zone?: string;
-        cas_small_zones?: string[];
-        esi?: string;
-        warning?: string;
-        pku?: string;
-        cssci?: string;
-        cscd?: string;
-        ahci?: string;
-        ccf?: string;
-        ei?: string;
-        china_st_core?: string;
-    };
-    official_all?: Record<string, unknown>;
-    official_select?: Record<string, unknown>;
-    custom_rank?: unknown;
-}
-export declare function queryJournalMetrics(options: QueryJournalMetricsOptions): Promise<JournalMetricsRow[]>;
-export {};
+export { queryJournalMetrics } from '../capabilities/journal-metrics/JournalMetricsService.js';
+export type { JournalMetricsRow, QueryJournalMetricsOptions } from '../capabilities/journal-metrics/types.js';
 //# sourceMappingURL=JournalMetricsService.d.ts.map

package/dist/services/JournalMetricsService.d.ts.map

@@ -1 +1 @@
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package/dist/services/JournalMetricsService.js

@@ -1,142 +1,2 @@
-import axios from 'axios';
-const EASYSCHOLAR_URL = 'https://www.easyscholar.cc/open/getPublicationRank';
-const REQUEST_DELAY_MS = 500;
-function easyScholarKey() {
-    const key = process.env.EASYSCHOLAR_KEY || '';
-    if (!key.trim()) {
-        throw new Error('EasyScholar API key not configured. Set EASYSCHOLAR_KEY with `paper-search setup EASYSCHOLAR_KEY`.');
-    }
-    return key.trim();
-}
-function uniqueJournals(journals) {
-    const seen = new Set();
-    const unique = [];
-    for (const journal of journals.map(item => item.trim()).filter(Boolean)) {
-        if (seen.has(journal))
-            continue;
-        seen.add(journal);
-        unique.push(journal);
-    }
-    return unique;
-}
-function stringValue(value) {
-    if (typeof value !== 'string')
-        return undefined;
-    const trimmed = value.trim();
-    return trimmed || undefined;
-}
-function extractZone(value) {
-    const text = stringValue(value);
-    const match = text?.match(/(\d+)区/);
-    return match?.[1];
-}
-function extractSmallZones(value) {
-    const text = stringValue(value);
-    if (!text)
-        return undefined;
-    const matches = [...text.matchAll(/([^/。；;]+?)([1-4])区/g)].map(match => `${match[1].trim()}${match[2]}区`);
-    return matches.length ? matches : undefined;
-}
-function normalizeOfficialRank(all) {
-    const casUpgraded = stringValue(all.sciUp);
-    const casBase = stringValue(all.sciBase);
-    const casSmall = stringValue(all.sciUpSmall);
-    const core = {
-        impact_factor: stringValue(all.sciif),
-        impact_factor_5y: stringValue(all.sciif5),
-        jcr_quartile: stringValue(all.sci),
-        ssci_quartile: stringValue(all.ssci),
-        jci: stringValue(all.jci),
-        cas_base: casBase,
-        cas_upgraded: casUpgraded,
-        cas_small: casSmall,
-        cas_top: stringValue(all.sciUpTop),
-        cas_zone: extractZone(casUpgraded) || extractZone(casBase),
-        cas_small_zones: extractSmallZones(casSmall),
-        esi: stringValue(all.esi),
-        warning: stringValue(all.sciwarn),
-        pku: stringValue(all.pku),
-        cssci: stringValue(all.cssci),
-        cscd: stringValue(all.cscd),
-        ahci: stringValue(all.ahci),
-        ccf: stringValue(all.ccf),
-        ei: stringValue(all.eii),
-        china_st_core: stringValue(all.zhongguokejihexin)
-    };
-    return Object.fromEntries(Object.entries(core).filter(([, value]) => value !== undefined));
-}
-function formatResult(journal, data, includeRaw) {
-    if (data.code !== 200 || data.msg !== 'SUCCESS' || !data.data) {
-        return {
-            journal,
-            status: 'not_found',
-            source: 'easyScholar',
-            message: data.msg || `EasyScholar returned code ${data.code ?? 'unknown'}`,
-            core: {}
-        };
-    }
-    const officialAll = data.data.officialRank?.all || {};
-    const officialSelect = data.data.officialRank?.select || {};
-    if (Object.keys(officialAll).length === 0) {
-        return {
-            journal,
-            status: 'not_found',
-            source: 'easyScholar',
-            message: 'No officialRank.all fields returned for this journal.',
-            core: {}
-        };
-    }
-    const row = {
-        journal,
-        status: 'found',
-        source: 'easyScholar',
-        core: normalizeOfficialRank(officialAll)
-    };
-    if (includeRaw) {
-        row.official_all = officialAll;
-        row.official_select = officialSelect;
-        row.custom_rank = data.data.customRank || {};
-    }
-    return row;
-}
-async function delay(ms) {
-    await new Promise(resolve => setTimeout(resolve, ms));
-}
-export async function queryJournalMetrics(options) {
-    const secretKey = easyScholarKey();
-    const journals = uniqueJournals(options.journals);
-    if (journals.length === 0) {
-        throw new Error('Provide at least one journal name.');
-    }
-    const rows = [];
-    for (let index = 0; index < journals.length; index += 1) {
-        const journal = journals[index];
-        try {
-            const response = await axios.get(EASYSCHOLAR_URL, {
-                params: {
-                    secretKey,
-                    publicationName: journal
-                },
-                timeout: 15000,
-                headers: {
-                    'User-Agent': 'Paper-Search-CLI/JournalMetrics'
-                }
-            });
-            rows.push(formatResult(journal, response.data, Boolean(options.includeRaw)));
-        }
-        catch (error) {
-            rows.push({
-                journal,
-                status: 'error',
-                source: 'easyScholar',
-                message: error?.message || String(error),
-                core: {}
-            });
-        }
-        if (index < journals.length - 1) {
-            await delay(REQUEST_DELAY_MS);
-        }
-    }
-    return rows;
-}
+export { queryJournalMetrics } from '../capabilities/journal-metrics/JournalMetricsService.js';
 //# sourceMappingURL=JournalMetricsService.js.map

package/dist/services/JournalMetricsService.js.map

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package/dist/services/MultiSourceSearchService.d.ts

@@ -1,19 +1,3 @@
-import type { Searchers } from '../core/searchers.js';
-import { Paper } from '../models/Paper.js';
-import { SearchOptions } from '../platforms/PaperSource.js';
-export interface MultiSourceSearchResult {
-    query: string;
-    sources_requested: string;
-    sources_used: string[];
-    source_results: Record<string, number>;
-    errors: Record<string, string>;
-    failed_sources: string[];
-    warnings: string[];
-    total: number;
-    raw_total: number;
-    papers: Record<string, unknown>[];
-}
-export declare function parseSourceList(sources: string | undefined, searchers: Searchers): string[];
-export declare function searchMultipleSources(searchers: Searchers, query: string, sources: string, options: SearchOptions, sourceTimeoutMs?: number): Promise<MultiSourceSearchResult>;
-export declare function dedupePapers(papers: Paper[]): Paper[];
+export { dedupePapers, parseSourceList, searchMultipleSources } from '../capabilities/metadata-search/MultiSourceSearchService.js';
+export type { MultiSourceSearchResult } from '../capabilities/metadata-search/types.js';
 //# sourceMappingURL=MultiSourceSearchService.d.ts.map

package/dist/services/MultiSourceSearchService.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"MultiSourceSearchService.d.ts","sourceRoot":"","sources":["../../src/services/MultiSourceSearchService.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,YAAY,EACZ,eAAe,EACf,qBAAqB,EACtB,MAAM,6DAA6D,CAAC;AAErE,YAAY,EAAE,uBAAuB,EAAE,MAAM,0CAA0C,CAAC"}

package/dist/services/MultiSourceSearchService.js

@@ -1,78 +1,2 @@
-import { TIMEOUTS } from '../config/constants.js';
-import { PaperFactory } from '../models/Paper.js';
-import { withTimeout } from '../utils/SecurityUtils.js';
-import { getAliasMap, getDefaultAllSources, resolvePlatformId } from '../core/platformMetadata.js';
-const ALIASES = getAliasMap();
-export function parseSourceList(sources, searchers) {
-    const requested = !sources || sources.trim() === '' ? 'crossref' : sources.trim();
-    if (requested.toLowerCase() === 'all') {
-        return getDefaultAllSources().filter(source => source in searchers);
-    }
-    return requested
-        .split(',')
-        .map(source => source.trim().toLowerCase())
-        .filter(Boolean)
-        .map(source => ALIASES[source] || resolvePlatformId(source))
-        .filter((source, index, values) => values.indexOf(source) === index)
-        .filter(source => source in searchers);
-}
-export async function searchMultipleSources(searchers, query, sources, options, sourceTimeoutMs = TIMEOUTS.SOURCE_TASK) {
-    const selected = parseSourceList(sources, searchers);
-    const settled = await Promise.allSettled(selected.map(async (source) => {
-        const searcher = searchers[source];
-        const results = await withTimeout(searcher.search(query, options), sourceTimeoutMs, `${source} search timed out after ${sourceTimeoutMs}ms`);
-        return { source, results };
-    }));
-    const sourceResults = {};
-    const errors = {};
-    const failedSources = [];
-    const merged = [];
-    for (let i = 0; i < settled.length; i += 1) {
-        const source = selected[i];
-        const result = settled[i];
-        if (result.status === 'rejected') {
-            sourceResults[source] = 0;
-            errors[source] = result.reason?.message || String(result.reason);
-            failedSources.push(source);
-            continue;
-        }
-        sourceResults[source] = result.value.results.length;
-        merged.push(...result.value.results);
-    }
-    const deduped = dedupePapers(merged);
-    return {
-        query,
-        sources_requested: sources,
-        sources_used: selected,
-        source_results: sourceResults,
-        errors,
-        failed_sources: failedSources,
-        warnings: failedSources.map(source => `${source}: ${errors[source]}`),
-        total: deduped.length,
-        raw_total: merged.length,
-        papers: deduped.map(paper => PaperFactory.toDict(paper))
-    };
-}
-export function dedupePapers(papers) {
-    const seen = new Set();
-    const out = [];
-    for (const paper of papers) {
-        const key = paperKey(paper);
-        if (seen.has(key))
-            continue;
-        seen.add(key);
-        out.push(paper);
-    }
-    return out;
-}
-function paperKey(paper) {
-    const doi = (paper.doi || '').trim().toLowerCase();
-    if (doi)
-        return `doi:${doi}`;
-    const title = (paper.title || '').trim().toLowerCase();
-    const authors = (paper.authors || []).join(';').trim().toLowerCase();
-    if (title)
-        return `title:${title}|authors:${authors}`;
-    return `id:${paper.source || 'unknown'}:${paper.paperId || 'unknown'}`;
-}
+export { dedupePapers, parseSourceList, searchMultipleSources } from '../capabilities/metadata-search/MultiSourceSearchService.js';
 //# sourceMappingURL=MultiSourceSearchService.js.map

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package/dist/services/OpenAccessFallbackService.d.ts

@@ -1,21 +1,4 @@
-import type { Searchers } from '../core/searchers.js';
-export interface DownloadWithFallbackOptions {
-    source: string;
-    paperId: string;
-    doi?: string;
-    title?: string;
-    savePath?: string;
-    /** When false, suppress the final Sci-Hub fallback. Default is true. */
-    useSciHub?: boolean;
-}
-export interface DownloadWithFallbackResult {
-    status: 'ok' | 'error';
-    path?: string;
-    attempts: Array<{
-        stage: string;
-        status: 'ok' | 'error' | 'skipped';
-        message: string;
-    }>;
-}
-export declare function downloadWithFallback(searchers: Searchers, options: DownloadWithFallbackOptions): Promise<DownloadWithFallbackResult>;
+export { createDefaultDownloadTiers, downloadWithFallback, INSTITUTIONAL_ACCESS_TIER_ID, insertDownloadTierBefore } from '../capabilities/pdf-discovery/OpenAccessFallbackService.js';
+export type { DownloadTier, DownloadTierContext, DownloadTierResult } from '../capabilities/pdf-discovery/DownloadTier.js';
+export type { DownloadWithFallbackOptions, DownloadWithFallbackResult } from '../capabilities/pdf-discovery/types.js';
 //# sourceMappingURL=OpenAccessFallbackService.d.ts.map

package/dist/services/OpenAccessFallbackService.d.ts.map

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