paper-search-cli 0.3.0 → 0.3.2

package/dist/core/schemas.js

@@ -1,50 +1,18 @@
 import { z } from 'zod';
-import { getGenericSearchToolPlatform, isKnownSearchPlatform } from './platformMetadata.js';
+import { getGenericSearchToolPlatform } from './platformMetadata.js';
 import { HARD_CORE_MAX_RESULTS_CAP, getCoreMaxResultsCap } from '../config/ResultCaps.js';
+import { SearchSemanticSnippetsSchema } from '../capabilities/body-snippet-search/schemas.js';
+import { CitationLookupSchema } from '../capabilities/citation-expansion/schemas.js';
+import { GetPaperByDoiSchema, SearchPapersSchema } from '../capabilities/metadata-search/schemas.js';
+import { QueryJournalMetricsSchema } from '../capabilities/journal-metrics/schemas.js';
+import { DownloadPaperSchema, DownloadWithFallbackSchema } from '../capabilities/pdf-discovery/schemas.js';
+export { CitationLookupSchema };
+export { DownloadPaperSchema, DownloadWithFallbackSchema };
+export { GetPaperByDoiSchema, SearchPapersSchema };
+export { QueryJournalMetricsSchema };
+export { SearchSemanticSnippetsSchema };
 const SortBySchema = z.enum(['relevance', 'date', 'citations']);
 const SortOrderSchema = z.enum(['asc', 'desc']);
-const SearchPlatformSchema = z
-    .string()
-    .min(1)
-    .refine(value => value === 'all' || isKnownSearchPlatform(value), {
-    message: 'Unsupported search platform'
-});
-export const SearchPapersSchema = z
-    .object({
-    query: z.string().min(1),
-    platform: z
-        .union([SearchPlatformSchema, z.literal('all')])
-        .optional()
-        .default('crossref'),
-    sources: z.string().optional(),
-    maxResults: z.number().int().min(1).max(HARD_CORE_MAX_RESULTS_CAP).optional().default(10),
-    year: z.string().optional(),
-    author: z.string().optional(),
-    journal: z.string().optional(),
-    category: z.string().optional(),
-    days: z.number().int().min(1).max(3650).optional(),
-    fetchDetails: z.boolean().optional(),
-    fieldsOfStudy: z.array(z.string()).optional(),
-    sortBy: SortBySchema.optional().default('relevance'),
-    sortOrder: SortOrderSchema.optional().default('desc')
-})
-    .strip()
-    .superRefine((value, ctx) => {
-    if (!value.sources && value.platform === 'core') {
-        assertCoreMaxResults(value.maxResults, ctx);
-        return;
-    }
-    if (value.maxResults > 100) {
-        ctx.addIssue({
-            code: z.ZodIssueCode.too_big,
-            maximum: 100,
-            type: 'number',
-            inclusive: true,
-            message: 'Number must be less than or equal to 100',
-            path: ['maxResults']
-        });
-    }
-});
 export const SearchArxivSchema = z
     .object({
     query: z.string().min(1),
@@ -97,20 +65,6 @@ export const SearchSemanticScholarSchema = z
     fieldsOfStudy: z.array(z.string()).optional()
 })
     .strip();
-export const SearchSemanticSnippetsSchema = z
-    .object({
-    query: z.string().min(1),
-    limit: z.number().int().min(1).max(1000).optional().default(5),
-    year: z.string().optional(),
-    fieldsOfStudy: z.union([z.string(), z.array(z.string())]).optional(),
-    paperIds: z.union([z.string(), z.array(z.string())]).optional(),
-    authors: z.union([z.string(), z.array(z.string())]).optional(),
-    venue: z.union([z.string(), z.array(z.string())]).optional(),
-    minCitationCount: z.number().int().min(0).optional(),
-    publicationDateOrYear: z.string().optional(),
-    fields: z.union([z.string(), z.array(z.string())]).optional()
-})
-    .strip();
 export const SearchIACRSchema = z
     .object({
     query: z.string().min(1),
@@ -118,15 +72,6 @@ export const SearchIACRSchema = z
     fetchDetails: z.boolean().optional()
 })
     .strip();
-export const DownloadPaperSchema = z
-    .object({
-    paperId: z.coerce.string().min(1),
-    platform: z.coerce.string().min(1).refine(value => value === 'wiley' || isKnownSearchPlatform(value), {
-        message: 'Unsupported download platform'
-    }),
-    savePath: z.coerce.string().optional()
-})
-    .strip();
 export const SearchGoogleScholarSchema = z
     .object({
     query: z.string().min(1),
@@ -136,26 +81,6 @@ export const SearchGoogleScholarSchema = z
     author: z.string().optional()
 })
     .strip();
-export const GetPaperByDoiSchema = z
-    .object({
-    doi: z.coerce.string().min(1),
-    platform: z
-        .enum([
-        'arxiv',
-        'webofscience',
-        'pubmed',
-        'crossref',
-        'openalex',
-        'unpaywall',
-        'pmc',
-        'europepmc',
-        'core',
-        'all'
-    ])
-        .optional()
-        .default('all')
-})
-    .strip();
 export const SearchSciHubSchema = z
     .object({
     doiOrUrl: z.coerce.string().min(1),
@@ -262,32 +187,11 @@ export const GenericPlatformSearchSchema = z
     sortOrder: SortOrderSchema.optional().default('desc')
 })
     .strip();
-export const DownloadWithFallbackSchema = z
-    .object({
-    source: z.coerce.string().min(1),
-    paperId: z.coerce.string().min(1),
-    doi: z.coerce.string().optional().default(''),
-    title: z.coerce.string().optional().default(''),
-    savePath: z.coerce.string().optional(),
-    useSciHub: z.boolean().optional().default(true)
-})
-    .strip();
 export const GetPlatformStatusSchema = z
     .object({
     validate: z.boolean().optional().default(false)
 })
     .strip();
-export const QueryJournalMetricsSchema = z
-    .object({
-    journal: z.string().optional(),
-    journals: z.union([z.string(), z.array(z.string())]).optional(),
-    file: z.string().optional(),
-    includeRaw: z.boolean().optional().default(false)
-})
-    .strip()
-    .refine(value => Boolean(value.journal || value.journals || value.file), {
-    message: 'Provide journal, journals, or file'
-});
 export function parseToolArgs(toolName, args) {
     if (getGenericSearchToolPlatform(String(toolName))) {
         return GenericPlatformSearchSchema.parse(args);
@@ -309,6 +213,9 @@ export function parseToolArgs(toolName, args) {
             return SearchSemanticScholarSchema.parse(args);
         case 'search_semantic_snippets':
             return SearchSemanticSnippetsSchema.parse(args);
+        case 'get_paper_citations':
+        case 'get_paper_references':
+            return CitationLookupSchema.parse(args);
         case 'search_iacr':
             return SearchIACRSchema.parse(args);
         case 'download_paper':

package/dist/core/schemas.js.map

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package/dist/core/searchers.d.ts

@@ -1,27 +1,27 @@
-import { ArxivSearcher } from '../platforms/ArxivSearcher.js';
-import { WebOfScienceSearcher } from '../platforms/WebOfScienceSearcher.js';
-import { PubMedSearcher } from '../platforms/PubMedSearcher.js';
-import { BioRxivSearcher, MedRxivSearcher } from '../platforms/BioRxivSearcher.js';
-import { SemanticScholarSearcher } from '../platforms/SemanticScholarSearcher.js';
-import { IACRSearcher } from '../platforms/IACRSearcher.js';
-import { GoogleScholarSearcher } from '../platforms/GoogleScholarSearcher.js';
-import { SciHubSearcher } from '../platforms/SciHubSearcher.js';
-import { ScienceDirectSearcher } from '../platforms/ScienceDirectSearcher.js';
-import { SpringerSearcher } from '../platforms/SpringerSearcher.js';
-import { WileySearcher } from '../platforms/WileySearcher.js';
-import { ScopusSearcher } from '../platforms/ScopusSearcher.js';
-import { CrossrefSearcher } from '../platforms/CrossrefSearcher.js';
-import { OpenAlexSearcher } from '../platforms/OpenAlexSearcher.js';
-import { UnpaywallSearcher } from '../platforms/UnpaywallSearcher.js';
-import { PMCSearcher } from '../platforms/PMCSearcher.js';
-import { EuropePMCSearcher } from '../platforms/EuropePMCSearcher.js';
-import { CORESearcher } from '../platforms/CORESearcher.js';
-import { OpenAIRESearcher } from '../platforms/OpenAIRESearcher.js';
-import { DBLPSearcher } from '../platforms/DBLPSearcher.js';
-import { IEEESearcher } from '../platforms/IEEESearcher.js';
-import { ACMSearcher } from '../platforms/ACMSearcher.js';
-import { USENIXSearcher } from '../platforms/USENIXSearcher.js';
-import { OpenReviewSearcher } from '../platforms/OpenReviewSearcher.js';
+import type { ACMSearcher } from '../platforms/ACMSearcher.js';
+import type { ArxivSearcher } from '../platforms/ArxivSearcher.js';
+import type { BioRxivSearcher, MedRxivSearcher } from '../platforms/BioRxivSearcher.js';
+import type { CORESearcher } from '../platforms/CORESearcher.js';
+import type { CrossrefSearcher } from '../platforms/CrossrefSearcher.js';
+import type { DBLPSearcher } from '../platforms/DBLPSearcher.js';
+import type { EuropePMCSearcher } from '../platforms/EuropePMCSearcher.js';
+import type { GoogleScholarSearcher } from '../platforms/GoogleScholarSearcher.js';
+import type { IACRSearcher } from '../platforms/IACRSearcher.js';
+import type { IEEESearcher } from '../platforms/IEEESearcher.js';
+import type { OpenAIRESearcher } from '../platforms/OpenAIRESearcher.js';
+import type { OpenAlexSearcher } from '../platforms/OpenAlexSearcher.js';
+import type { OpenReviewSearcher } from '../platforms/OpenReviewSearcher.js';
+import type { PMCSearcher } from '../platforms/PMCSearcher.js';
+import type { PubMedSearcher } from '../platforms/PubMedSearcher.js';
+import type { ScienceDirectSearcher } from '../platforms/ScienceDirectSearcher.js';
+import type { SciHubSearcher } from '../platforms/SciHubSearcher.js';
+import type { ScopusSearcher } from '../platforms/ScopusSearcher.js';
+import type { SemanticScholarSearcher } from '../platforms/SemanticScholarSearcher.js';
+import type { SpringerSearcher } from '../platforms/SpringerSearcher.js';
+import type { UnpaywallSearcher } from '../platforms/UnpaywallSearcher.js';
+import type { USENIXSearcher } from '../platforms/USENIXSearcher.js';
+import type { WebOfScienceSearcher } from '../platforms/WebOfScienceSearcher.js';
+import type { WileySearcher } from '../platforms/WileySearcher.js';
 export interface Searchers {
     arxiv: ArxivSearcher;
     webofscience: WebOfScienceSearcher;

package/dist/core/searchers.d.ts.map

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package/dist/core/searchers.js

@@ -1,88 +1,23 @@
-import { ArxivSearcher } from '../platforms/ArxivSearcher.js';
-import { WebOfScienceSearcher } from '../platforms/WebOfScienceSearcher.js';
-import { PubMedSearcher } from '../platforms/PubMedSearcher.js';
-import { BioRxivSearcher, MedRxivSearcher } from '../platforms/BioRxivSearcher.js';
-import { SemanticScholarSearcher } from '../platforms/SemanticScholarSearcher.js';
-import { IACRSearcher } from '../platforms/IACRSearcher.js';
-import { GoogleScholarSearcher } from '../platforms/GoogleScholarSearcher.js';
-import { SciHubSearcher } from '../platforms/SciHubSearcher.js';
-import { ScienceDirectSearcher } from '../platforms/ScienceDirectSearcher.js';
-import { SpringerSearcher } from '../platforms/SpringerSearcher.js';
-import { WileySearcher } from '../platforms/WileySearcher.js';
-import { ScopusSearcher } from '../platforms/ScopusSearcher.js';
-import { CrossrefSearcher } from '../platforms/CrossrefSearcher.js';
-import { OpenAlexSearcher } from '../platforms/OpenAlexSearcher.js';
-import { UnpaywallSearcher } from '../platforms/UnpaywallSearcher.js';
-import { PMCSearcher } from '../platforms/PMCSearcher.js';
-import { EuropePMCSearcher } from '../platforms/EuropePMCSearcher.js';
-import { CORESearcher } from '../platforms/CORESearcher.js';
-import { OpenAIRESearcher } from '../platforms/OpenAIRESearcher.js';
-import { DBLPSearcher } from '../platforms/DBLPSearcher.js';
-import { IEEESearcher } from '../platforms/IEEESearcher.js';
-import { ACMSearcher } from '../platforms/ACMSearcher.js';
-import { USENIXSearcher } from '../platforms/USENIXSearcher.js';
-import { OpenReviewSearcher } from '../platforms/OpenReviewSearcher.js';
+import { PLATFORM_FACTORIES } from './platformFactories.js';
+import { PLATFORM_METADATA } from './platformMetadata.js';
 import { logDebug } from '../utils/Logger.js';
 let searchers = null;
 export function initializeSearchers() {
     if (searchers)
         return searchers;
     logDebug('Initializing searchers...');
-    const arxivSearcher = new ArxivSearcher();
-    const wosSearcher = new WebOfScienceSearcher(process.env.WOS_API_KEY, process.env.WOS_API_VERSION);
-    const pubmedSearcher = new PubMedSearcher(process.env.PUBMED_API_KEY);
-    const biorxivSearcher = new BioRxivSearcher('biorxiv');
-    const medrxivSearcher = new MedRxivSearcher();
-    const semanticSearcher = new SemanticScholarSearcher(process.env.SEMANTIC_SCHOLAR_API_KEY);
-    const iacrSearcher = new IACRSearcher();
-    const googleScholarSearcher = new GoogleScholarSearcher();
-    const sciHubSearcher = new SciHubSearcher();
-    const scienceDirectSearcher = new ScienceDirectSearcher(process.env.ELSEVIER_API_KEY);
-    const springerSearcher = new SpringerSearcher(process.env.SPRINGER_API_KEY, process.env.SPRINGER_OPENACCESS_API_KEY);
-    const wileySearcher = new WileySearcher(process.env.WILEY_TDM_TOKEN);
-    const scopusSearcher = new ScopusSearcher(process.env.ELSEVIER_API_KEY);
-    const crossrefSearcher = new CrossrefSearcher(process.env.CROSSREF_MAILTO);
-    const openAlexSearcher = new OpenAlexSearcher();
-    const unpaywallSearcher = new UnpaywallSearcher();
-    const pmcSearcher = new PMCSearcher();
-    const europePmcSearcher = new EuropePMCSearcher();
-    const coreSearcher = new CORESearcher();
-    const openAireSearcher = new OpenAIRESearcher();
-    const dblpSearcher = new DBLPSearcher();
-    const ieeeSearcher = new IEEESearcher(process.env.IEEE_API_KEY);
-    const acmSearcher = new ACMSearcher(process.env.CROSSREF_MAILTO);
-    const usenixSearcher = new USENIXSearcher(dblpSearcher);
-    const openReviewSearcher = new OpenReviewSearcher();
-    searchers = {
-        arxiv: arxivSearcher,
-        webofscience: wosSearcher,
-        pubmed: pubmedSearcher,
-        wos: wosSearcher,
-        biorxiv: biorxivSearcher,
-        medrxiv: medrxivSearcher,
-        semantic: semanticSearcher,
-        iacr: iacrSearcher,
-        googlescholar: googleScholarSearcher,
-        scholar: googleScholarSearcher,
-        scihub: sciHubSearcher,
-        sciencedirect: scienceDirectSearcher,
-        springer: springerSearcher,
-        wiley: wileySearcher,
-        scopus: scopusSearcher,
-        crossref: crossrefSearcher,
-        openalex: openAlexSearcher,
-        unpaywall: unpaywallSearcher,
-        pmc: pmcSearcher,
-        europepmc: europePmcSearcher,
-        core: coreSearcher,
-        openaire: openAireSearcher,
-        dblp: dblpSearcher,
-        ieee: ieeeSearcher,
-        acm: acmSearcher,
-        usenix: usenixSearcher,
-        openreview: openReviewSearcher,
-        springerlink: springerSearcher
-    };
+    const instances = {};
+    for (const platform of PLATFORM_METADATA) {
+        const factory = PLATFORM_FACTORIES[platform.id];
+        if (!factory)
+            continue;
+        const instance = factory({ env: process.env, instances });
+        instances[platform.id] = instance;
+        for (const alias of platform.aliases || []) {
+            instances[alias] = instance;
+        }
+    }
+    searchers = instances;
     logDebug('Searchers initialized successfully');
     return searchers;
 }

package/dist/core/searchers.js.map

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package/dist/core/textReports.d.ts

@@ -1,21 +1,2 @@
-import type { CapabilityProfile } from './capabilityProfile.js';
-import type { SkillDiffResult } from '../skills/SkillInstaller.js';
-interface DoctorReportInput {
-    config: {
-        path: string;
-        configured: number;
-        missing: string[];
-        entries: Array<{
-            key: string;
-            configured: boolean;
-            source: string;
-            value: string;
-        }>;
-    };
-    capabilityProfile: CapabilityProfile;
-    platformStatus: any;
-}
-export declare function renderDoctorTextReport(report: DoctorReportInput): string;
-export declare function renderSkillDiffTextReport(report: SkillDiffResult): string;
-export {};
+export * from '../management/reports/index.js';
 //# sourceMappingURL=textReports.d.ts.map

package/dist/core/textReports.d.ts.map

@@ -1 +1 @@
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package/dist/core/textReports.js

@@ -1,85 +1,2 @@
-export function renderDoctorTextReport(report) {
-    const lines = [
-        'Paper Search Doctor',
-        '',
-        `Config: ${report.config.path}`,
-        `Configured keys: ${report.config.configured}`,
-        `Missing keys: ${report.config.missing.length}`,
-        ''
-    ];
-    const configuredEntries = report.config.entries.filter(entry => entry.configured);
-    if (configuredEntries.length > 0) {
-        lines.push('Configured:');
-        for (const entry of configuredEntries) {
-            lines.push(`- ${entry.key}: ${entry.value} (${entry.source})`);
-        }
-        lines.push('');
-    }
-    lines.push('Capability Profile:');
-    for (const entry of report.capabilityProfile.entries) {
-        lines.push(`- ${entry.id}: ${entry.status}`);
-        lines.push(`  Reason: ${entry.reason}`);
-        if (entry.missing.length > 0) {
-            lines.push(`  Missing: ${entry.missing.join(', ')}`);
-        }
-    }
-    lines.push('');
-    const platformData = report.platformStatus?.data;
-    if (Array.isArray(platformData)) {
-        const counts = countBy(platformData, item => String(item.apiKeyStatus || 'unknown'));
-        lines.push('Platform API key status:');
-        for (const [status, count] of Object.entries(counts).sort()) {
-            lines.push(`- ${status}: ${count}`);
-        }
-        lines.push('');
-    }
-    lines.push('Next commands:');
-    lines.push('- paper-search smoke --mock --pretty');
-    lines.push('- paper-search smoke --live --pretty');
-    lines.push('- paper-search skills status --pretty');
-    return lines.join('\n');
-}
-export function renderSkillDiffTextReport(report) {
-    const lines = [
-        'Paper Search Skill Diff',
-        '',
-        `Skill: ${report.skill}`,
-        `Root: ${report.root}`,
-        `Targets: ${report.selected.join(', ') || '(none)'}`,
-        ''
-    ];
-    for (const target of report.targets) {
-        lines.push(`${target.target} (${target.label})`);
-        lines.push(`Path: ${target.path}`);
-        lines.push(`Status: ${target.status}`);
-        lines.push(`Managed files: ${target.files}; installed files: ${target.installedFiles}`);
-        if (target.error) {
-            lines.push(`Error: ${target.error}`);
-        }
-        if (target.missingFiles.length > 0) {
-            lines.push(`Missing managed files: ${target.missingFiles.join(', ')}`);
-        }
-        if (target.staleFiles.length > 0) {
-            lines.push(`Stale managed files: ${target.staleFiles.join(', ')}`);
-        }
-        if (target.extraFiles.length > 0) {
-            lines.push(`Extra Skill Files (${target.extraFiles.length}, names only): ${target.extraFiles.join(', ')}`);
-        }
-        const diffs = target.managedFiles.filter(file => file.status === 'stale' && file.diff);
-        for (const diff of diffs) {
-            lines.push('');
-            lines.push(String(diff.diff));
-        }
-        lines.push('');
-    }
-    return lines.join('\n').trimEnd();
-}
-function countBy(items, getKey) {
-    const counts = {};
-    for (const item of items) {
-        const key = getKey(item);
-        counts[key] = (counts[key] || 0) + 1;
-    }
-    return counts;
-}
+export * from '../management/reports/index.js';
 //# sourceMappingURL=textReports.js.map

package/dist/core/textReports.js.map

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package/dist/core/tools.d.ts.map

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