open-wiki-spec 0.2.3 → 0.3.0

package/dist/core/migrate/migrate.js

@@ -23,6 +23,19 @@ export function planMigration(options) {
         throw new Error(`OpenSpec directory not found. Specify with --openspec-dir or ensure openspec/ exists in ${projectPath}`);
     }
     const wikiPath = path.join(projectPath, 'wiki');
+    // Hybrid-state guard: refuse to migrate into a vault that already holds
+    // typed notes unless the caller explicitly opts in. Silent interleave
+    // causes `filesSkipped` entries that later manifest as unresolved wiki-
+    // links and drifted Change Log entries — a class of bug the user would
+    // have no visibility into until `ows verify` catches it much later.
+    if (!options.allowExistingVault && hasExistingTypedNotes(wikiPath)) {
+        throw new Error(`Target vault already exists at ${wikiPath} and contains typed notes. ` +
+            `Migrating into an existing vault can silently skip conflicting files and ` +
+            `leave the graph in a half-merged state. Either: (1) migrate into an empty ` +
+            `project directory, (2) move your existing wiki/ aside first, or ` +
+            `(3) pass \`allowExistingVault: true\` (CLI: --allow-existing-vault) if you ` +
+            `explicitly want to merge and accept the risk.`);
+    }
     // Step 1: Scan
     const scan = scanOpenSpec(openspecPath);
     const scanStep = {
@@ -33,7 +46,7 @@ export function planMigration(options) {
     };
     // Step 2: Generate source note from config context
     const sourceOutputs = [];
-    if (scan.config?.context) {
+    if (scan.config?.context && typeof scan.config.context === 'string') {
         sourceOutputs.push(convertConfigToSource(scan.config.context, scan.config));
     }
     const sourceStep = {
@@ -83,6 +96,16 @@ export function planMigration(options) {
         };
         steps.push(archiveStep);
     }
+    // Step 7: Feature ↔ Change backlink patch.
+    // Each Change's frontmatter declares its target Feature(s), but the
+    // Feature side isn't updated to link back. `ows verify` flags this
+    // with MISSING_LINK, so a migrated vault looks broken on first run.
+    // Post-process feature outputs to include `changes:` wikilinks to
+    // every Change that points at them.
+    applyFeatureChangeBacklinks(featureStep.outputs, [
+        ...activeChangeStep.outputs,
+        ...(steps.find((s) => s.name === 'Convert Archived Changes')?.outputs ?? []),
+    ]);
     // Count totals
     const totalFiles = steps.reduce((sum, s) => sum + s.outputs.length, 0);
     const totalWarnings = steps.reduce((sum, s) => sum + s.warnings.length, 0);
@@ -94,6 +117,61 @@ export function planMigration(options) {
         totalWarnings,
     };
 }
+/**
+ * Patch Feature ConversionResults' frontmatter to include back-references
+ * to Changes that target them. Walks change outputs, extracts feature
+ * wikilinks, then rewrites matching Feature outputs' `changes:` field.
+ */
+function applyFeatureChangeBacklinks(featureOutputs, changeOutputs) {
+    // feature target path -> set of change titles that reference it
+    const backlinkMap = new Map();
+    for (const change of changeOutputs) {
+        if (!change.targetPath.startsWith('wiki/04-changes/') &&
+            !change.targetPath.startsWith('wiki/99-archive/'))
+            continue;
+        // Extract the Change title (H1). Change content uses `# Change: <title>`
+        const titleMatch = change.content.match(/^#\s+(Change:\s*[^\n]+)$/m);
+        if (!titleMatch)
+            continue;
+        const changeTitle = titleMatch[1].trim();
+        // Extract feature refs from frontmatter. Accepts both `feature: "[[Feature: X]]"`
+        // and multi-entry `features:` array blocks.
+        const fmMatch = change.content.match(/^---\n([\s\S]*?)\n---/);
+        if (!fmMatch)
+            continue;
+        const fm = fmMatch[1];
+        const featureLinks = new Set();
+        const singleMatch = fm.match(/^feature:\s*"(\[\[[^\]]+\]\])"/m);
+        if (singleMatch)
+            featureLinks.add(singleMatch[1]);
+        const featuresBlockMatch = fm.match(/^features:\n((?:  -\s*"\[\[[^\]]+\]\]"\s*\n)+)/m);
+        if (featuresBlockMatch) {
+            const entries = featuresBlockMatch[1].matchAll(/"(\[\[[^\]]+\]\])"/g);
+            for (const e of entries)
+                featureLinks.add(e[1]);
+        }
+        for (const link of featureLinks) {
+            const existing = backlinkMap.get(link) ?? new Set();
+            existing.add(`[[${changeTitle}]]`);
+            backlinkMap.set(link, existing);
+        }
+    }
+    // Now rewrite each Feature's `changes: []` line to include backlinks
+    for (const feature of featureOutputs) {
+        if (!feature.targetPath.startsWith('wiki/03-features/'))
+            continue;
+        const titleMatch = feature.content.match(/^#\s+(Feature:\s*[^\n]+)$/m);
+        if (!titleMatch)
+            continue;
+        const featureLink = `[[${titleMatch[1].trim()}]]`;
+        const changeTitles = backlinkMap.get(featureLink);
+        if (!changeTitles || changeTitles.size === 0)
+            continue;
+        const linkList = [...changeTitles].map((t) => `  - "${t}"`).join('\n');
+        // Replace an empty `changes: []` or `changes:\n` block with a populated list.
+        feature.content = feature.content.replace(/^changes:\s*\[\]\s*$/m, `changes:\n${linkList}`);
+    }
+}
 /**
  * Execute a migration plan: init vault structure and write all files.
  */
@@ -146,4 +224,40 @@ export async function migrate(options) {
     const plan = planMigration(options);
     return executeMigration(plan, options.dryRun);
 }
+/**
+ * Does the target wiki/ directory already hold typed notes?
+ * Checks for any .md file inside a typed subfolder. Meta/seed files under
+ * `00-meta/` do not count — those are created by `ows init` and do not
+ * imply user content.
+ */
+function hasExistingTypedNotes(wikiPath) {
+    if (!fs.existsSync(wikiPath))
+        return false;
+    const TYPED_SUBDIRS = [
+        '01-sources',
+        '02-systems',
+        '03-features',
+        '04-changes',
+        '05-decisions',
+        '06-queries',
+        '99-archive',
+    ];
+    for (const sub of TYPED_SUBDIRS) {
+        const dir = path.join(wikiPath, sub);
+        if (!fs.existsSync(dir))
+            continue;
+        let entries;
+        try {
+            entries = fs.readdirSync(dir);
+        }
+        catch {
+            continue;
+        }
+        for (const entry of entries) {
+            if (entry.endsWith('.md'))
+                return true;
+        }
+    }
+    return false;
+}
 //# sourceMappingURL=migrate.js.map

package/dist/core/migrate/migrate.js.map

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package/dist/core/migrate/sanitize.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Sanitize an external directory name for use as a note ID in migration.
+ * Strips path traversal sequences, control characters, and non-safe characters.
+ */
+export declare function sanitizeMigrationId(name: string): string;
+/**
+ * Safely format a string value for inline YAML use (unquoted style).
+ * Uses yaml.stringify to properly escape values that contain
+ * special YAML characters or newlines.
+ */
+export declare function safeYamlScalar(value: string): string;
+/**
+ * Safely format a string value for inline YAML use (always quoted).
+ * Forces double-quoting to prevent YAML type coercion (e.g., dates, booleans).
+ */
+export declare function safeYamlQuoted(value: string): string;
+//# sourceMappingURL=sanitize.d.ts.map

package/dist/core/migrate/sanitize.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"sanitize.d.ts","sourceRoot":"","sources":["../../../src/core/migrate/sanitize.ts"],"names":[],"mappings":"AAEA;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CASxD;AAED;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAEpD;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAIpD"}

package/dist/core/migrate/sanitize.js

@@ -0,0 +1,33 @@
+import { stringify as yamlStringify } from 'yaml';
+/**
+ * Sanitize an external directory name for use as a note ID in migration.
+ * Strips path traversal sequences, control characters, and non-safe characters.
+ */
+export function sanitizeMigrationId(name) {
+    return name
+        .replace(/\.\.\//g, '')
+        .replace(/\.\./g, '')
+        .toLowerCase()
+        .replace(/[\s_]+/g, '-')
+        .replace(/[^\p{L}\p{N}-]/gu, '')
+        .replace(/-+/g, '-')
+        .replace(/^-|-$/g, '');
+}
+/**
+ * Safely format a string value for inline YAML use (unquoted style).
+ * Uses yaml.stringify to properly escape values that contain
+ * special YAML characters or newlines.
+ */
+export function safeYamlScalar(value) {
+    return yamlStringify(value).trimEnd();
+}
+/**
+ * Safely format a string value for inline YAML use (always quoted).
+ * Forces double-quoting to prevent YAML type coercion (e.g., dates, booleans).
+ */
+export function safeYamlQuoted(value) {
+    // Escape backslash and double-quote, then wrap
+    const escaped = value.replace(/\\/g, '\\\\').replace(/"/g, '\\"').replace(/\n/g, '\\n');
+    return `"${escaped}"`;
+}
+//# sourceMappingURL=sanitize.js.map

package/dist/core/migrate/sanitize.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"sanitize.js","sourceRoot":"","sources":["../../../src/core/migrate/sanitize.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,IAAI,aAAa,EAAE,MAAM,MAAM,CAAC;AAElD;;;GAGG;AACH,MAAM,UAAU,mBAAmB,CAAC,IAAY;IAC9C,OAAO,IAAI;SACR,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC;SACtB,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;SACpB,WAAW,EAAE;SACb,OAAO,CAAC,SAAS,EAAE,GAAG,CAAC;SACvB,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAC;SAC/B,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC;SACnB,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;AAC3B,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,cAAc,CAAC,KAAa;IAC1C,OAAO,aAAa,CAAC,KAAK,CAAC,CAAC,OAAO,EAAE,CAAC;AACxC,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,cAAc,CAAC,KAAa;IAC1C,+CAA+C;IAC/C,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IACxF,OAAO,IAAI,OAAO,GAAG,CAAC;AACxB,CAAC"}

package/dist/core/migrate/spec-converter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"spec-converter.d.ts","sourceRoot":"","sources":["../../../src/core/migrate/spec-converter.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,OAAO,KAAK,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAShE;;GAEG;AACH,wBAAgB,WAAW,CAAC,IAAI,EAAE,WAAW,EAAE,SAAS,EAAE,MAAM,GAAG,gBAAgB,CAuBlF;AAED;;GAEG;AACH,wBAAgB,eAAe,CAC7B,KAAK,EAAE,WAAW,EAAE,EACpB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC9B;IAAE,OAAO,EAAE,gBAAgB,EAAE,CAAC;IAAC,QAAQ,EAAE,MAAM,EAAE,CAAA;CAAE,CAcrD"}
+{"version":3,"file":"spec-converter.d.ts","sourceRoot":"","sources":["../../../src/core/migrate/spec-converter.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,OAAO,KAAK,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAUhE;;GAEG;AACH,wBAAgB,WAAW,CAAC,IAAI,EAAE,WAAW,EAAE,SAAS,EAAE,MAAM,GAAG,gBAAgB,CAuBlF;AAED;;GAEG;AACH,wBAAgB,eAAe,CAC7B,KAAK,EAAE,WAAW,EAAE,EACpB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC9B;IAAE,OAAO,EAAE,gBAAgB,EAAE,CAAC;IAAC,QAAQ,EAAE,MAAM,EAAE,CAAA;CAAE,CAcrD"}

package/dist/core/migrate/spec-converter.js

@@ -1,4 +1,5 @@
 import * as path from 'node:path';
+import { sanitizeMigrationId, safeYamlScalar, safeYamlQuoted } from './sanitize.js';
 const REQUIREMENT_HEADING_RE = /^###\s+Requirement:\s*(.+)$/;
 const SCENARIO_HEADING_RE = /^####\s+Scenario:\s*(.+)$/;
 const PURPOSE_SECTION_RE = /^##\s+Purpose$/m;
@@ -8,7 +9,7 @@ const WHY_SECTION_RE = /^##\s+Why$/m;
  * Convert a single OpenSpec spec into a Feature note.
  */
 export function convertSpec(spec, systemRef) {
-    const id = spec.capability;
+    const id = sanitizeMigrationId(spec.capability);
     const title = formatTitle(spec.capability);
     const purpose = extractPurpose(spec.content);
     const requirementsBlock = extractRequirementsBlock(spec.content);
@@ -49,10 +50,10 @@ export function convertAllSpecs(specs, systemRefs) {
 function buildFeatureNote(opts) {
     return `---
 type: feature
-id: ${opts.id}
+id: ${safeYamlScalar(opts.id)}
 status: active
 systems:
-  - "${opts.systemRef}"
+  - ${safeYamlQuoted(opts.systemRef)}
 sources: []
 decisions: []
 changes: []
@@ -83,6 +84,11 @@ ${opts.knownGaps || '<!-- No known gaps specified in original spec -->'}
 
 ${opts.requirementsBlock || '<!-- No requirements found in original spec -->'}
 
+## Change Log
+
+| Date | Change | Summary |
+|------|--------|---------|
+
 ## Related Notes
 `;
 }

package/dist/core/migrate/spec-converter.js.map

@@ -1 +1 @@
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+{"version":3,"file":"spec-converter.js","sourceRoot":"","sources":["../../../src/core/migrate/spec-converter.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,mBAAmB,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAEpF,MAAM,sBAAsB,GAAG,6BAA6B,CAAC;AAC7D,MAAM,mBAAmB,GAAG,2BAA2B,CAAC;AACxD,MAAM,kBAAkB,GAAG,iBAAiB,CAAC;AAC7C,MAAM,uBAAuB,GAAG,sBAAsB,CAAC;AACvD,MAAM,cAAc,GAAG,aAAa,CAAC;AAErC;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,IAAiB,EAAE,SAAiB;IAC9D,MAAM,EAAE,GAAG,mBAAmB,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;IAChD,MAAM,KAAK,GAAG,WAAW,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;IAC3C,MAAM,OAAO,GAAG,cAAc,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAC7C,MAAM,iBAAiB,GAAG,wBAAwB,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACjE,MAAM,WAAW,GAAG,kBAAkB,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACrD,MAAM,SAAS,GAAG,gBAAgB,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAEjD,MAAM,OAAO,GAAG,gBAAgB,CAAC;QAC/B,EAAE;QACF,KAAK;QACL,SAAS;QACT,OAAO;QACP,iBAAiB;QACjB,WAAW;QACX,SAAS;KACV,CAAC,CAAC;IAEH,OAAO;QACL,UAAU,EAAE,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,EAAE,KAAK,CAAC;QACxD,OAAO;QACP,iBAAiB,EAAE,kBAAkB,IAAI,CAAC,UAAU,UAAU;KAC/D,CAAC;AACJ,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,eAAe,CAC7B,KAAoB,EACpB,UAA+B;IAE/B,MAAM,OAAO,GAAuB,EAAE,CAAC;IACvC,MAAM,QAAQ,GAAa,EAAE,CAAC;IAE9B,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,SAAS,GAAG,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,UAAU,CAAC,IAAI,gBAAgB,CAAC;QACtE,IAAI,CAAC;YACH,OAAO,CAAC,IAAI,CAAC,WAAW,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC;QAC7C,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,QAAQ,CAAC,IAAI,CAAC,0BAA0B,IAAI,CAAC,UAAU,KAAM,GAAa,CAAC,OAAO,EAAE,CAAC,CAAC;QACxF,CAAC;IACH,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,CAAC;AAC/B,CAAC;AAED,SAAS,gBAAgB,CAAC,IAQzB;IACC,OAAO;;MAEH,cAAc,CAAC,IAAI,CAAC,EAAE,CAAC;;;MAGvB,cAAc,CAAC,IAAI,CAAC,SAAS,CAAC;;;;;;;;;aASvB,IAAI,CAAC,KAAK;;;;EAIrB,IAAI,CAAC,OAAO,IAAI,yDAAyD;;;;;;;;EAQzE,IAAI,CAAC,WAAW,IAAI,oDAAoD;;;;EAIxE,IAAI,CAAC,SAAS,IAAI,mDAAmD;;;;EAIrE,IAAI,CAAC,iBAAiB,IAAI,iDAAiD;;;;;;;;CAQ5E,CAAC;AACF,CAAC;AAED;;GAEG;AACH,SAAS,cAAc,CAAC,OAAe;IACrC,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC;IAChD,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,+CAA+C;QAC/C,MAAM,KAAK,GAAG,OAAO,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QACvC,IAAI,KAAK,KAAK,CAAC,CAAC;YAAE,OAAO,EAAE,CAAC;QAC5B,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,CAAC,gCAAgC,CAAC,CAAC;QAChE,IAAI,OAAO;YAAE,OAAO,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;QACtC,OAAO,EAAE,CAAC;IACZ,CAAC;IAED,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAM,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IAChD,MAAM,WAAW,GAAG,OAAO,CAAC,OAAO,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IACvD,MAAM,cAAc,GAAG,WAAW,KAAK,CAAC,CAAC;QACvC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,QAAQ,CAAC;QACzB,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAC;IAEzC,OAAO,cAAc,CAAC,IAAI,EAAE,CAAC;AAC/B,CAAC;AAED;;GAEG;AACH,SAAS,wBAAwB,CAAC,OAAe;IAC/C,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAC;IACrD,IAAI,CAAC,KAAK;QAAE,OAAO,EAAE,CAAC;IAEtB,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAM,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IAChD,yEAAyE;IACzE,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;IAC1C,MAAM,MAAM,GAAG,SAAS,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAC;IACxD,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,MAAM,CAAC,KAAM,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IAErE,OAAO,KAAK,CAAC,IAAI,EAAE,CAAC;AACtB,CAAC;AAED;;GAEG;AACH,SAAS,kBAAkB,CAAC,OAAe;IACzC,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAC;IACnD,IAAI,CAAC,KAAK;QAAE,OAAO,EAAE,CAAC;IACtB,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAM,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IAChD,MAAM,WAAW,GAAG,OAAO,CAAC,OAAO,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IACvD,OAAO,CAAC,WAAW,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;AACtG,CAAC;AAED;;GAEG;AACH,SAAS,gBAAgB,CAAC,OAAe;IACvC,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;IACpD,IAAI,CAAC,KAAK;QAAE,OAAO,EAAE,CAAC;IACtB,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAM,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IAChD,MAAM,WAAW,GAAG,OAAO,CAAC,OAAO,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IACvD,OAAO,CAAC,WAAW,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;AACtG,CAAC;AAED;;GAEG;AACH,SAAS,WAAW,CAAC,UAAkB;IACrC,OAAO,UAAU;SACd,KAAK,CAAC,GAAG,CAAC;SACV,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;SACzD,IAAI,CAAC,GAAG,CAAC,CAAC;AACf,CAAC"}

package/dist/core/migrate/types.d.ts

@@ -121,5 +121,14 @@ export interface MigrateOptions {
     skipArchive?: boolean;
     /** Output as JSON */
     json?: boolean;
+    /**
+     * Allow migration to proceed even when a `wiki/` directory with typed
+     * notes already exists at the target path. Without this flag, migrate
+     * refuses so the user doesn't silently interleave an openspec import
+     * into an already-bootstrapped vault — which causes half-merged state
+     * that only surfaces later as `filesSkipped` entries and unresolved
+     * wikilinks. Setting this flag acknowledges the risk explicitly.
+     */
+    allowExistingVault?: boolean;
 }
 //# sourceMappingURL=types.d.ts.map

package/dist/core/migrate/types.d.ts.map

@@ -1 +1 @@
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package/dist/core/parser/frontmatter-parser.d.ts

@@ -1,11 +1,5 @@
 import { type Frontmatter } from '../schema/frontmatter.js';
 import type { RawFrontmatter, ParseError } from './types.js';
-/**
- * Extract YAML frontmatter from a markdown string.
- *
- * Frontmatter is delimited by --- on its own line at the start of the file
- * and a closing --- on its own line.
- */
 export declare function extractFrontmatter(content: string): {
     raw: RawFrontmatter | null;
     errors: ParseError[];

package/dist/core/parser/frontmatter-parser.d.ts.map

@@ -1 +1 @@
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package/dist/core/parser/frontmatter-parser.js

@@ -6,9 +6,17 @@ import { FrontmatterSchema } from '../schema/frontmatter.js';
  * Frontmatter is delimited by --- on its own line at the start of the file
  * and a closing --- on its own line.
  */
+/**
+ * Maximum size (in bytes) of the YAML frontmatter block.
+ * Guards against pathological inputs (e.g., multi-MB YAML) that could
+ * cause excessive memory use or parser slowdown.
+ */
+const MAX_FRONTMATTER_SIZE = 1024 * 1024; // 1 MiB
 export function extractFrontmatter(content) {
     const errors = [];
-    const normalized = content.replace(/\r\n/g, '\n').replace(/\r/g, '\n');
+    // Strip UTF-8 BOM if present (some editors like Windows Notepad add it)
+    const stripped = content.charCodeAt(0) === 0xFEFF ? content.slice(1) : content;
+    const normalized = stripped.replace(/\r\n/g, '\n').replace(/\r/g, '\n');
     const lines = normalized.split('\n');
     if (lines.length === 0 || lines[0].trim() !== '---') {
         errors.push({
@@ -19,9 +27,11 @@ export function extractFrontmatter(content) {
         });
         return { raw: null, errors };
     }
+    // Find closing delimiter: must be `---` at column 0 (not indented).
+    // Indented `---` inside block scalars (e.g., `summary: |`) must not be treated as a delimiter.
     let closeIndex = -1;
     for (let i = 1; i < lines.length; i++) {
-        if (lines[i].trim() === '---') {
+        if (lines[i] === '---' || lines[i] === '--- ') {
             closeIndex = i;
             break;
         }
@@ -38,6 +48,16 @@ export function extractFrontmatter(content) {
     const yamlContent = lines.slice(1, closeIndex).join('\n');
     const body = lines.slice(closeIndex + 1).join('\n');
     const bodyStartLine = closeIndex + 2; // 1-indexed, line after closing ---
+    // Guard against pathological YAML sizes
+    if (yamlContent.length > MAX_FRONTMATTER_SIZE) {
+        errors.push({
+            level: 'error',
+            source: 'frontmatter',
+            message: `Frontmatter exceeds ${MAX_FRONTMATTER_SIZE} bytes (got ${yamlContent.length}). Refusing to parse.`,
+            line: 1,
+        });
+        return { raw: null, errors };
+    }
     let data;
     try {
         data = parseYaml(yamlContent);
@@ -71,6 +91,43 @@ export function extractFrontmatter(content) {
  */
 export function validateFrontmatter(data) {
     const errors = [];
+    // Detect `key: null` for fields that must be arrays. YAML authors often
+    // write `aliases:` (empty value → null) or `tags: null` expecting an
+    // empty list, but the schema's passthrough() silently accepts null and
+    // downstream `getArray()` coerces it to []. Surface the ambiguity as a
+    // warning so the user can fix it explicitly.
+    const ARRAY_FIELDS = ['aliases', 'tags', 'systems', 'sources', 'decisions', 'changes', 'depends_on', 'touches', 'features'];
+    for (const field of ARRAY_FIELDS) {
+        if (field in data && data[field] === null) {
+            errors.push({
+                level: 'warning',
+                source: 'frontmatter',
+                message: `Frontmatter field "${field}" is null. Use an empty list "[]" or omit the field instead. Treating as empty list.`,
+            });
+            // Normalize to empty array so downstream consumers get a predictable shape.
+            data[field] = [];
+        }
+    }
+    // Detect case-variant reserved keys (e.g., "Type" instead of "type") and
+    // give a clear, actionable error. YAML is case-sensitive, so these would
+    // otherwise fail Zod validation with a confusing "missing required" error.
+    const reservedKeys = ['type', 'id', 'status', 'tags'];
+    const dataKeys = Object.keys(data);
+    for (const reserved of reservedKeys) {
+        if (!(reserved in data)) {
+            const variant = dataKeys.find((k) => k !== reserved && k.toLowerCase() === reserved);
+            if (variant) {
+                errors.push({
+                    level: 'error',
+                    source: 'frontmatter',
+                    message: `Frontmatter key "${variant}" must be lowercase "${reserved}". YAML keys are case-sensitive.`,
+                });
+            }
+        }
+    }
+    if (errors.length > 0) {
+        return { frontmatter: null, errors };
+    }
     const result = FrontmatterSchema.safeParse(data);
     if (!result.success) {
         for (const issue of result.error.issues) {

package/dist/core/parser/frontmatter-parser.js.map

@@ -1 +1 @@
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+{"version":3,"file":"frontmatter-parser.js","sourceRoot":"","sources":["../../../src/core/parser/frontmatter-parser.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,IAAI,SAAS,EAAE,MAAM,MAAM,CAAC;AAC1C,OAAO,EAAE,iBAAiB,EAAoB,MAAM,0BAA0B,CAAC;AAG/E;;;;;GAKG;AACH;;;;GAIG;AACH,MAAM,oBAAoB,GAAG,IAAI,GAAG,IAAI,CAAC,CAAC,QAAQ;AAElD,MAAM,UAAU,kBAAkB,CAAC,OAAe;IAChD,MAAM,MAAM,GAAiB,EAAE,CAAC;IAChC,wEAAwE;IACxE,MAAM,QAAQ,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,MAAM,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC;IAC/E,MAAM,UAAU,GAAG,QAAQ,CAAC,OAAO,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC;IACxE,MAAM,KAAK,GAAG,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAErC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,KAAK,EAAE,CAAC;QACpD,MAAM,CAAC,IAAI,CAAC;YACV,KAAK,EAAE,OAAO;YACd,MAAM,EAAE,aAAa;YACrB,OAAO,EAAE,2DAA2D;YACpE,IAAI,EAAE,CAAC;SACR,CAAC,CAAC;QACH,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;IAC/B,CAAC;IAED,oEAAoE;IACpE,+FAA+F;IAC/F,IAAI,UAAU,GAAG,CAAC,CAAC,CAAC;IACpB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,KAAK,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,MAAM,EAAE,CAAC;YAC9C,UAAU,GAAG,CAAC,CAAC;YACf,MAAM;QACR,CAAC;IACH,CAAC;IAED,IAAI,UAAU,KAAK,CAAC,CAAC,EAAE,CAAC;QACtB,MAAM,CAAC,IAAI,CAAC;YACV,KAAK,EAAE,OAAO;YACd,MAAM,EAAE,aAAa;YACrB,OAAO,EAAE,8CAA8C;YACvD,IAAI,EAAE,CAAC;SACR,CAAC,CAAC;QACH,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;IAC/B,CAAC;IAED,MAAM,WAAW,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAC1D,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,UAAU,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACpD,MAAM,aAAa,GAAG,UAAU,GAAG,CAAC,CAAC,CAAC,oCAAoC;IAE1E,wCAAwC;IACxC,IAAI,WAAW,CAAC,MAAM,GAAG,oBAAoB,EAAE,CAAC;QAC9C,MAAM,CAAC,IAAI,CAAC;YACV,KAAK,EAAE,OAAO;YACd,MAAM,EAAE,aAAa;YACrB,OAAO,EAAE,uBAAuB,oBAAoB,eAAe,WAAW,CAAC,MAAM,uBAAuB;YAC5G,IAAI,EAAE,CAAC;SACR,CAAC,CAAC;QACH,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;IAC/B,CAAC;IAED,IAAI,IAA6B,CAAC;IAClC,IAAI,CAAC;QACH,IAAI,GAAG,SAAS,CAAC,WAAW,CAAC,CAAC;QAC9B,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,IAAI,KAAK,IAAI,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;YACrE,MAAM,CAAC,IAAI,CAAC;gBACV,KAAK,EAAE,OAAO;gBACd,MAAM,EAAE,aAAa;gBACrB,OAAO,EAAE,sDAAsD;gBAC/D,IAAI,EAAE,CAAC;aACR,CAAC,CAAC;YACH,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;QAC/B,CAAC;IACH,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,MAAM,CAAC,IAAI,CAAC;YACV,KAAK,EAAE,OAAO;YACd,MAAM,EAAE,aAAa;YACrB,OAAO,EAAE,gCAAiC,CAAW,CAAC,OAAO,EAAE;YAC/D,IAAI,EAAE,CAAC;SACR,CAAC,CAAC;QACH,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;IAC/B,CAAC;IAED,OAAO;QACL,GAAG,EAAE,EAAE,IAAI,EAAE,IAA+B,EAAE,IAAI,EAAE,aAAa,EAAE;QACnE,MAAM;KACP,CAAC;AACJ,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,mBAAmB,CACjC,IAA6B;IAE7B,MAAM,MAAM,GAAiB,EAAE,CAAC;IAEhC,wEAAwE;IACxE,qEAAqE;IACrE,uEAAuE;IACvE,uEAAuE;IACvE,6CAA6C;IAC7C,MAAM,YAAY,GAAG,CAAC,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,SAAS,EAAE,WAAW,EAAE,SAAS,EAAE,YAAY,EAAE,SAAS,EAAE,UAAU,CAAC,CAAC;IAC5H,KAAK,MAAM,KAAK,IAAI,YAAY,EAAE,CAAC;QACjC,IAAI,KAAK,IAAI,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,KAAK,IAAI,EAAE,CAAC;YAC1C,MAAM,CAAC,IAAI,CAAC;gBACV,KAAK,EAAE,SAAS;gBAChB,MAAM,EAAE,aAAa;gBACrB,OAAO,EAAE,sBAAsB,KAAK,sFAAsF;aAC3H,CAAC,CAAC;YACH,4EAA4E;YAC5E,IAAI,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC;QACnB,CAAC;IACH,CAAC;IAED,yEAAyE;IACzE,yEAAyE;IACzE,2EAA2E;IAC3E,MAAM,YAAY,GAAG,CAAC,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;IACtD,MAAM,QAAQ,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACnC,KAAK,MAAM,QAAQ,IAAI,YAAY,EAAE,CAAC;QACpC,IAAI,CAAC,CAAC,QAAQ,IAAI,IAAI,CAAC,EAAE,CAAC;YACxB,MAAM,OAAO,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,QAAQ,IAAI,CAAC,CAAC,WAAW,EAAE,KAAK,QAAQ,CAAC,CAAC;YACrF,IAAI,OAAO,EAAE,CAAC;gBACZ,MAAM,CAAC,IAAI,CAAC;oBACV,KAAK,EAAE,OAAO;oBACd,MAAM,EAAE,aAAa;oBACrB,OAAO,EAAE,oBAAoB,OAAO,wBAAwB,QAAQ,kCAAkC;iBACvG,CAAC,CAAC;YACL,CAAC;QACH,CAAC;IACH,CAAC;IACD,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACtB,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;IACvC,CAAC;IAED,MAAM,MAAM,GAAG,iBAAiB,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;IAEjD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;QACpB,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC;YACxC,MAAM,CAAC,IAAI,CAAC;gBACV,KAAK,EAAE,OAAO;gBACd,MAAM,EAAE,aAAa;gBACrB,OAAO,EAAE,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,KAAK,CAAC,OAAO,EAAE;aACrD,CAAC,CAAC;QACL,CAAC;QACD,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;IACvC,CAAC;IAED,OAAO,EAAE,WAAW,EAAE,MAAM,CAAC,IAAmB,EAAE,MAAM,EAAE,CAAC;AAC7D,CAAC"}

package/dist/core/parser/note-parser.js

@@ -81,26 +81,37 @@ function computeBodyHash(body) {
 }
 /**
  * Recursively walk a frontmatter object and extract wikilinks from string values.
+ * Protects against YAML alias cycles with a visited set and depth limit.
  */
 function extractWikilinksFromObject(obj, location) {
+    const MAX_DEPTH = 10;
     const allWikilinks = [];
     const allErrors = [];
-    function walk(value) {
+    const visited = new WeakSet();
+    function walk(value, depth) {
+        if (depth > MAX_DEPTH)
+            return;
         if (typeof value === 'string') {
             const { wikilinks, errors } = extractWikilinks(value, location, 1);
             allWikilinks.push(...wikilinks);
             allErrors.push(...errors);
         }
         else if (Array.isArray(value)) {
+            if (visited.has(value))
+                return;
+            visited.add(value);
             for (const item of value)
-                walk(item);
+                walk(item, depth + 1);
         }
         else if (typeof value === 'object' && value !== null) {
+            if (visited.has(value))
+                return;
+            visited.add(value);
             for (const v of Object.values(value))
-                walk(v);
+                walk(v, depth + 1);
         }
     }
-    walk(obj);
+    walk(obj, 0);
     return { wikilinks: allWikilinks, errors: allErrors };
 }
 //# sourceMappingURL=note-parser.js.map

package/dist/core/parser/note-parser.js.map

@@ -1 +1 @@
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package/dist/core/parser/requirement-parser.js

@@ -106,6 +106,10 @@ function extractNormativeStatement(section) {
         if (line.match(/^#{1,6}\s+/)) {
             break;
         }
+        // Strip apply workflow marker comments (MODIFIED/ADDED markers)
+        if (line.match(/^<!--\s*(MODIFIED|ADDED)\s+by\s+change:/)) {
+            continue;
+        }
         normativeLines.push(line);
     }
     const text = normativeLines.join('\n').trim();

package/dist/core/parser/requirement-parser.js.map

@@ -1 +1 @@
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package/dist/core/parser/task-parser.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"task-parser.d.ts","sourceRoot":"","sources":["../../../src/core/parser/task-parser.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,cAAc,EAAE,UAAU,EAAE,MAAM,YAAY,CAAC;AAKtE;;GAEG;AACH,wBAAgB,UAAU,CACxB,QAAQ,EAAE,OAAO,EAAE,GAClB;IAAE,KAAK,EAAE,cAAc,EAAE,CAAC;IAAC,MAAM,EAAE,UAAU,EAAE,CAAA;CAAE,CAyBnD"}
+{"version":3,"file":"task-parser.d.ts","sourceRoot":"","sources":["../../../src/core/parser/task-parser.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,cAAc,EAAE,UAAU,EAAE,MAAM,YAAY,CAAC;AAYtE;;GAEG;AACH,wBAAgB,UAAU,CACxB,QAAQ,EAAE,OAAO,EAAE,GAClB;IAAE,KAAK,EAAE,cAAc,EAAE,CAAC;IAAC,MAAM,EAAE,UAAU,EAAE,CAAA;CAAE,CAsCnD"}

package/dist/core/parser/task-parser.js

@@ -1,5 +1,11 @@
 import { findSection } from './section-parser.js';
+// Full task line with content. Required by `parseTasks` to both capture
+// the completion state and record meaningful text.
 const TASK_REGEX = /^-\s+\[([ xX])\]\s+(.+)$/;
+// Empty task line (no description after the checkbox, e.g. `- [ ]` or
+// `- [x]    `). These get flagged as parse warnings so users know a
+// placeholder checkbox won't count toward progress.
+const EMPTY_TASK_REGEX = /^-\s+\[([ xX])\]\s*$/;
 /**
  * Parse task checklist items from a Change note's Tasks section.
  */
@@ -21,6 +27,19 @@ export function parseTasks(sections) {
                 done: match[1] !== ' ',
                 line: taskSection.line + i + 1,
             });
+            continue;
+        }
+        // Empty checkbox: surface as a parse warning so the change author
+        // sees it instead of a silent "0 tasks" count. The warning is
+        // non-blocking — continue.ts/apply.ts still treat the Change as
+        // having the parsed tasks, but the user knows to fill in the line.
+        if (EMPTY_TASK_REGEX.test(lines[i])) {
+            errors.push({
+                level: 'warning',
+                source: 'task',
+                message: `Empty checklist item "${lines[i].trim()}" (no task description). Add text after the checkbox or remove the line.`,
+                line: taskSection.line + i + 1,
+            });
         }
     }
     return { tasks, errors };

package/dist/core/parser/task-parser.js.map

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package/dist/core/parser/wikilink-parser.d.ts.map

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