open-wiki-spec 0.2.3 → 0.3.0

package/dist/core/workflow/verify/correctness.js

@@ -1,3 +1,4 @@
+import { isSchemaVersionSupported, SUPPORTED_SCHEMA_VERSIONS, computeSchemaFingerprint, BASELINE_SCHEMA_FINGERPRINT, } from '../../index/schema-version.js';
 /**
  * Run the operation validation matrix for a Change's Delta Summary.
  * Pre-apply: checks preconditions (requirement must/must not exist).
@@ -200,10 +201,19 @@ export function checkStaleBase(change, index) {
                 dimension: 'correctness',
                 severity: 'error',
                 code: 'STALE_BASE',
-                message: `${entry.op} "${entry.target_name}": base_fingerprint mismatch. Expected ${entry.base_fingerprint}, current is ${currentReq.content_hash}. Another Change may have been applied since this Delta Summary was written.`,
+                // Surface both possible causes explicitly — we can't distinguish
+                // "legitimately stale because another Change applied first" from
+                // "the author copy-pasted or mistyped the hash and it was never a
+                // real prior value" without traversing git history. Giving users
+                // both diagnoses up front saves a confused debugging round-trip.
+                message: `${entry.op} "${entry.target_name}": base_fingerprint mismatch. ` +
+                    `Expected ${entry.base_fingerprint}, current is ${currentReq.content_hash}. ` +
+                    `Either another Change was applied since this Delta Summary was written, ` +
+                    `or the base_fingerprint was typed/copied incorrectly and never matched the Feature.`,
                 note_id: change.id,
                 note_path: change.path,
-                suggestion: 'Re-read the current Feature requirement and update the Delta Summary base_fingerprint.',
+                suggestion: 'Re-read the current Feature requirement and paste its actual content_hash into the Delta Summary base_fingerprint. ' +
+                    'If you believe your hash is correct, check `git log -p` on the Feature file to see which Change last modified it.',
             });
         }
     }
@@ -230,6 +240,19 @@ export function checkStatusTransition(change, index) {
         }
     }
     if (change.status === 'in_progress') {
+        // Must have all prerequisites met (planned-level checks)
+        const missing = checkPlannedPrerequisites(change);
+        if (missing.length > 0) {
+            issues.push({
+                dimension: 'correctness',
+                severity: 'error',
+                code: 'INVALID_STATUS_TRANSITION',
+                message: `Change "${change.id}" is "in_progress" but missing planned-level prerequisites: ${missing.join(', ')}`,
+                note_id: change.id,
+                note_path: change.path,
+                suggestion: 'Status cannot skip from proposed directly to in_progress. Fill sections first.',
+            });
+        }
         for (const dep of change.depends_on) {
             const depRecord = index.records.get(dep);
             if (depRecord && depRecord.status !== 'applied') {
@@ -245,6 +268,35 @@ export function checkStatusTransition(change, index) {
             }
         }
     }
+    if (change.status === 'applied') {
+        // Applied changes must have all prerequisites met and all tasks done
+        const missing = checkPlannedPrerequisites(change);
+        if (missing.length > 0) {
+            issues.push({
+                dimension: 'correctness',
+                severity: 'error',
+                code: 'INVALID_STATUS_TRANSITION',
+                message: `Change "${change.id}" is "applied" but missing prerequisites: ${missing.join(', ')}. ` +
+                    `Status may have been set manually (e.g., proposed → applied via file edit), bypassing the apply workflow.`,
+                note_id: change.id,
+                note_path: change.path,
+                suggestion: 'Run the apply workflow instead of editing the status field directly.',
+            });
+        }
+        const unfinishedTasks = change.tasks.filter((t) => !t.done);
+        if (unfinishedTasks.length > 0) {
+            issues.push({
+                dimension: 'correctness',
+                severity: 'error',
+                code: 'INVALID_STATUS_TRANSITION',
+                message: `Change "${change.id}" is "applied" but has ${unfinishedTasks.length} unchecked task(s). ` +
+                    `The apply workflow requires all tasks to be checked before transitioning.`,
+                note_id: change.id,
+                note_path: change.path,
+                suggestion: 'Either complete the remaining tasks, or revert the status field to "in_progress".',
+            });
+        }
+    }
     return issues;
 }
 /**
@@ -256,19 +308,48 @@ export function checkStatusTransition(change, index) {
  * so per-record comparison is always a no-op. Instead, we surface index-level
  * schema_mismatch warnings (e.g., missing schema.md).
  */
-export function checkSchemaVersionMatch(_note, _declaredVersion, index) {
+export function checkSchemaVersionMatch(_note, declaredVersion, index) {
+    const issues = [];
     if (!index)
-        return [];
-    return index.warnings
-        .filter((w) => w.type === 'schema_mismatch')
-        .map((w) => ({
-        dimension: 'correctness',
-        severity: 'error',
-        code: 'SCHEMA_MISMATCH',
-        message: w.message,
-        note_path: w.note_path,
-        suggestion: 'Create or fix wiki/00-meta/schema.md with a valid schema_version field.',
-    }));
+        return issues;
+    // Add index-level schema_mismatch warnings
+    for (const w of index.warnings) {
+        if (w.type === 'schema_mismatch') {
+            issues.push({
+                dimension: 'correctness',
+                severity: 'error',
+                code: 'SCHEMA_MISMATCH',
+                message: w.message,
+                note_path: w.note_path,
+                suggestion: 'Create or fix wiki/00-meta/schema.md with a valid schema_version field.',
+            });
+        }
+    }
+    // Gate: unsupported schema version
+    if (declaredVersion && declaredVersion !== 'unknown' && !isSchemaVersionSupported(declaredVersion)) {
+        issues.push({
+            dimension: 'correctness',
+            severity: 'error',
+            code: 'UNSUPPORTED_SCHEMA_VERSION',
+            message: `Vault schema version "${declaredVersion}" is not supported by this ows version. Supported: ${SUPPORTED_SCHEMA_VERSIONS.join(', ')}`,
+            suggestion: 'Upgrade the vault schema or use a matching ows version.',
+        });
+    }
+    // Tripwire: schema shape changed without bumping CURRENT_SCHEMA_VERSION.
+    // Warns developers (not end users) that required/optional sections diverged
+    // from the baseline — a silent breaking change.
+    const runtimeFingerprint = computeSchemaFingerprint();
+    if (runtimeFingerprint !== BASELINE_SCHEMA_FINGERPRINT) {
+        issues.push({
+            dimension: 'correctness',
+            severity: 'warning',
+            code: 'BREAKING_CHANGE_WITHOUT_VERSION_BUMP',
+            message: `ows schema shape changed (fingerprint ${runtimeFingerprint}) but CURRENT_SCHEMA_VERSION was not bumped. ` +
+                `Baseline: ${BASELINE_SCHEMA_FINGERPRINT}. Vaults built with the old shape may break silently.`,
+            suggestion: 'Bump CURRENT_SCHEMA_VERSION in src/core/index/schema-version.ts and update BASELINE_SCHEMA_FINGERPRINT to match.',
+        });
+    }
+    return issues;
 }
 /**
  * Check drift between Delta Summary and current Feature state based on Change status.

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package/dist/core/workflow/verify/vault-integrity.d.ts

@@ -27,10 +27,16 @@ export declare function ambiguousAliasCheck(index: VaultIndex): VerifyIssue[];
 /**
  * Check for orphan notes (notes with no incoming or outgoing links).
  * Meta files are excluded from this check.
+ *
+ * Bootstrap exemption: if the vault contains only a single typed note, it
+ * cannot possibly link anywhere (there is nothing to link to), so flagging
+ * it as an orphan is noise that would break the first-note experience
+ * under `--strict`. Skip the check in that case.
  */
 export declare function orphanNoteCheck(index: VaultIndex): VerifyIssue[];
 /**
  * Check for notes in 99-archive/ that don't have 'applied' status.
+ * Also check that note type matches its typed folder location (e.g., feature → 03-features/).
  */
 export declare function archivePlacementCheck(index: VaultIndex): VerifyIssue[];
 /**
@@ -48,6 +54,11 @@ export declare function emptyTypedNoteCheck(index: VaultIndex): VerifyIssue[];
  * This can cause ambiguous wikilink resolution.
  */
 export declare function titleIdCollisionCheck(index: VaultIndex): VerifyIssue[];
+/**
+ * Scan note body for accidental secret leakage.
+ * Returns warnings (not errors) to encourage removal without blocking work.
+ */
+export declare function secretLeakCheck(notes: IndexRecord[]): VerifyIssue[];
 /**
  * Resolve a wikilink target against the vault index.
  * Checks id, title, and aliases.

package/dist/core/workflow/verify/vault-integrity.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"vault-integrity.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/vault-integrity.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWjE;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAW/D;AAED;;;;GAIG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWxE;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWpE;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAiBhE;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAiBtE;AAED;;;;GAIG;AACH,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAa5E;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWpE;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAoBtE;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,GAAG,WAAW,GAAG,SAAS,CAYpF"}
+{"version":3,"file":"vault-integrity.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/vault-integrity.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWjE;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAW/D;AAED;;;;GAIG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWxE;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWpE;AAED;;;;;;;;GAQG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAqBhE;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CA4CtE;AAED;;;;GAIG;AACH,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAa5E;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWpE;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAoBtE;AAuBD;;;GAGG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,WAAW,EAAE,GAAG,WAAW,EAAE,CAuBnE;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,GAAG,WAAW,GAAG,SAAS,CAYpF"}

package/dist/core/workflow/verify/vault-integrity.js

@@ -64,12 +64,18 @@ export function ambiguousAliasCheck(index) {
 /**
  * Check for orphan notes (notes with no incoming or outgoing links).
  * Meta files are excluded from this check.
+ *
+ * Bootstrap exemption: if the vault contains only a single typed note, it
+ * cannot possibly link anywhere (there is nothing to link to), so flagging
+ * it as an orphan is noise that would break the first-note experience
+ * under `--strict`. Skip the check in that case.
  */
 export function orphanNoteCheck(index) {
     const issues = [];
-    for (const record of index.records.values()) {
-        if (record.path.startsWith('wiki/00-meta/'))
-            continue;
+    const typedNotes = Array.from(index.records.values()).filter((r) => !r.path.startsWith('wiki/00-meta/'));
+    if (typedNotes.length <= 1)
+        return issues;
+    for (const record of typedNotes) {
         if (record.links_in.length === 0 && record.links_out.length === 0) {
             issues.push({
                 dimension: 'vault_integrity',
@@ -86,9 +92,19 @@ export function orphanNoteCheck(index) {
 }
 /**
  * Check for notes in 99-archive/ that don't have 'applied' status.
+ * Also check that note type matches its typed folder location (e.g., feature → 03-features/).
  */
 export function archivePlacementCheck(index) {
     const issues = [];
+    // Expected folder per note type (archived notes exempt — they live in 99-archive/)
+    const TYPE_TO_FOLDER = {
+        source: 'wiki/01-sources/',
+        system: 'wiki/02-systems/',
+        feature: 'wiki/03-features/',
+        change: 'wiki/04-changes/',
+        decision: 'wiki/05-decisions/',
+        query: 'wiki/06-queries/',
+    };
     for (const record of index.records.values()) {
         const isInArchive = record.path.startsWith('wiki/99-archive/');
         if (isInArchive && record.status !== 'applied') {
@@ -102,6 +118,21 @@ export function archivePlacementCheck(index) {
                 suggestion: 'Only applied changes should be in the archive. Move the note back or update its status.',
             });
         }
+        // Type/folder mismatch check (skip archived notes — they're allowed anywhere under 99-archive/)
+        if (!isInArchive) {
+            const expectedFolder = TYPE_TO_FOLDER[record.type];
+            if (expectedFolder && !record.path.startsWith(expectedFolder)) {
+                issues.push({
+                    dimension: 'vault_integrity',
+                    severity: 'error',
+                    code: 'TYPE_FOLDER_MISMATCH',
+                    message: `Note "${record.id}" has type "${record.type}" but is located in "${record.path}" instead of "${expectedFolder}"`,
+                    note_id: record.id,
+                    note_path: record.path,
+                    suggestion: `Move the note to ${expectedFolder} or correct the "type" field in frontmatter.`,
+                });
+            }
+        }
     }
     return issues;
 }
@@ -165,6 +196,52 @@ export function titleIdCollisionCheck(index) {
     }
     return issues;
 }
+/**
+ * Common secret patterns that should never appear in vault frontmatter.
+ * Scans values (not keys) for these patterns and warns the user.
+ */
+const SECRET_PATTERNS = [
+    { name: 'OpenAI API key', regex: /\bsk-[A-Za-z0-9]{20,}\b/ },
+    { name: 'Anthropic API key', regex: /\bsk-ant-[A-Za-z0-9-]{20,}\b/ },
+    { name: 'GitHub token', regex: /\bghp_[A-Za-z0-9]{30,}\b/ },
+    { name: 'GitHub fine-grained token', regex: /\bgithub_pat_[A-Za-z0-9_]{30,}\b/ },
+    // AWS long-lived (AKIA) and temporary session (ASIA) access key IDs
+    { name: 'AWS access key', regex: /\b(?:AKIA|ASIA)[0-9A-Z]{16}\b/ },
+    { name: 'Google API key', regex: /\bAIza[0-9A-Za-z_-]{35}\b/ },
+    // GCP service account key (JSON)
+    { name: 'GCP service account key', regex: /"type"\s*:\s*"service_account"/ },
+    { name: 'Slack token', regex: /\bxox[baprs]-[A-Za-z0-9-]{10,}\b/ },
+    { name: 'JWT token', regex: /\beyJ[A-Za-z0-9_-]{10,}\.[A-Za-z0-9_-]{10,}\.[A-Za-z0-9_-]{10,}\b/ },
+    { name: 'Private key header', regex: /-----BEGIN (?:RSA |EC |DSA |OPENSSH )?PRIVATE KEY-----/ },
+    // Generic "password = ..." or "secret = ..." in config-like blocks
+    { name: 'Hardcoded credential', regex: /(?:password|secret|token|api_key)\s*[:=]\s*["'][A-Za-z0-9+/=_-]{16,}["']/i },
+];
+/**
+ * Scan note body for accidental secret leakage.
+ * Returns warnings (not errors) to encourage removal without blocking work.
+ */
+export function secretLeakCheck(notes) {
+    const issues = [];
+    for (const note of notes) {
+        // Scan the raw_text (body) for secret patterns
+        const scanText = note.raw_text ?? '';
+        for (const { name, regex } of SECRET_PATTERNS) {
+            if (regex.test(scanText)) {
+                issues.push({
+                    dimension: 'vault_integrity',
+                    severity: 'warning',
+                    code: 'POTENTIAL_SECRET_LEAK',
+                    message: `Note "${note.id}" may contain a ${name}`,
+                    note_id: note.id,
+                    note_path: note.path,
+                    suggestion: 'Remove the secret and rotate the credential. Use environment variables instead.',
+                });
+                break; // one warning per note is enough
+            }
+        }
+    }
+    return issues;
+}
 /**
  * Resolve a wikilink target against the vault index.
  * Checks id, title, and aliases.

package/dist/core/workflow/verify/vault-integrity.js.map

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package/dist/core/workflow/verify/verify.d.ts

@@ -1,8 +1,3 @@
-/**
- * Verify orchestrator.
- * Runs all verification checks across completeness, correctness, coherence,
- * and vault integrity dimensions. Takes a VaultIndex and returns a VerifyReport.
- */
 import type { VaultIndex } from '../../../types/index.js';
 import type { VerifyReport } from '../../../types/verify.js';
 export interface VerifyOptions {

package/dist/core/workflow/verify/verify.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"verify.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/verify.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,UAAU,EAAe,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAgC,YAAY,EAAE,MAAM,0BAA0B,CAAC;AAgC3F,MAAM,WAAW,aAAa;IAC5B,0CAA0C;IAC1C,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,wCAAwC;IACxC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,4BAA4B;IAC5B,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB,0DAA0D;IAC1D,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;;GAGG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,UAAU,EAAE,OAAO,CAAC,EAAE,aAAa,GAAG,YAAY,CAsH/E"}
+{"version":3,"file":"verify.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/verify.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAAE,UAAU,EAAe,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAgC,YAAY,EAAE,MAAM,0BAA0B,CAAC;AAmC3F,MAAM,WAAW,aAAa;IAC5B,0CAA0C;IAC1C,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,wCAAwC;IACxC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,4BAA4B;IAC5B,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB,0DAA0D;IAC1D,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;;GAGG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,UAAU,EAAE,OAAO,CAAC,EAAE,aAAa,GAAG,YAAY,CAoK/E"}

package/dist/core/workflow/verify/verify.js

@@ -1,7 +1,15 @@
-import { duplicateIdCheck, missingIdCheck, unresolvedWikilinkCheck, ambiguousAliasCheck, orphanNoteCheck, archivePlacementCheck, invalidFrontmatterTypeCheck, emptyTypedNoteCheck, titleIdCollisionCheck, } from './vault-integrity.js';
+/**
+ * Verify orchestrator.
+ * Runs all verification checks across completeness, correctness, coherence,
+ * and vault integrity dimensions. Takes a VaultIndex and returns a VerifyReport.
+ */
+import { existsSync } from 'node:fs';
+import { join } from 'node:path';
+import { VERIFY_REPORT_SCHEMA_VERSION } from '../../../types/verify.js';
+import { duplicateIdCheck, missingIdCheck, unresolvedWikilinkCheck, ambiguousAliasCheck, orphanNoteCheck, archivePlacementCheck, invalidFrontmatterTypeCheck, emptyTypedNoteCheck, titleIdCollisionCheck, secretLeakCheck, } from './vault-integrity.js';
 import { checkFeatureCompleteness, checkChangeCompleteness, checkMinimumSections, } from './completeness.js';
 import { runOperationValidationMatrix, checkStaleBase, checkStatusTransition, checkSchemaVersionMatch, checkDriftForStatus, checkUnfilledApplyMarkers, } from './correctness.js';
-import { checkConflictsViaSequencing, checkDescriptionConsistency, checkDecisionConsistency, checkDependsOnConsistency, } from './coherence.js';
+import { checkConflictsViaSequencing, checkDescriptionConsistency, checkDecisionConsistency, checkDependsOnConsistency, checkFeatureChangeBacklinks, } from './coherence.js';
 /**
  * Main verify entry point.
  * Stateless: takes a VaultIndex, does NOT build its own index.
@@ -10,11 +18,48 @@ export function verify(index, options) {
     const issues = [];
     const allRecords = Array.from(index.records.values());
     const schemaVersion = index.schema_version;
+    // Concurrency warning: an in-flight `ows apply` holds wiki/.ows-lock and
+    // shuffles Feature files through temp/backup names. If verify runs while
+    // that's happening, buildIndex silently skips ENOENT on moved files and
+    // produces a phantom "everything is missing" report. Detect the lock up
+    // front and emit an info issue so operators know the verify results are
+    // against a half-mutated vault.
+    if (index.vaultRoot) {
+        const lockPath = join(index.vaultRoot, 'wiki', '.ows-lock');
+        if (existsSync(lockPath)) {
+            issues.push({
+                dimension: 'vault_integrity',
+                severity: 'info',
+                code: 'APPLY_IN_PROGRESS',
+                message: 'wiki/.ows-lock is present — another process is running `ows apply`. ' +
+                    'Verify results may reflect a half-mutated state (files may be in ' +
+                    'temp/backup names). Re-run verify after apply completes.',
+                suggestion: 'Wait for the apply to finish, then run `ows verify` again.',
+            });
+        }
+    }
     // Determine which records to check based on options
     let targetRecords = allRecords;
     if (options?.changeId) {
         const targetChange = index.records.get(options.changeId);
         if (targetChange) {
+            // Archived changes: verify scope is narrower. Archived changes are
+            // historical records and shouldn't run pre-apply correctness checks
+            // (they've already been applied) or be treated like active ones for
+            // coherence. Surface an info-level note so users know the
+            // interpretation of the report.
+            const isArchived = targetChange.path.startsWith('wiki/99-archive/');
+            if (isArchived) {
+                issues.push({
+                    dimension: 'vault_integrity',
+                    severity: 'info',
+                    code: 'ARCHIVED_TARGET',
+                    message: `Change "${options.changeId}" is archived. Verify runs with reduced scope — ` +
+                        'no pre-apply matrix, no status transition check. Use `ows list --json` to see active changes.',
+                    note_id: targetChange.id,
+                    note_path: targetChange.path,
+                });
+            }
             // Include the target change and its directly related notes
             const relatedIds = new Set([options.changeId]);
             if (targetChange.feature)
@@ -42,6 +87,7 @@ export function verify(index, options) {
     issues.push(...invalidFrontmatterTypeCheck(index));
     issues.push(...emptyTypedNoteCheck(index));
     issues.push(...titleIdCollisionCheck(index));
+    issues.push(...secretLeakCheck(targetRecords));
     // 2. Completeness checks
     for (const record of targetRecords) {
         if (record.type === 'feature') {
@@ -90,10 +136,14 @@ export function verify(index, options) {
         // Always use allRecords for conflict detection — scoping to targetRecords
         // would hide parallel changes that touch the same feature/system.
         const activeChanges = allRecords.filter((r) => r.type === 'change' && r.status !== 'applied');
-        if (activeChanges.length >= 2) {
+        // Run sequencing even with a single active change so we still detect
+        // self-referencing cycles (change depends_on includes itself), stale base
+        // fingerprints, and requirement conflicts within that single change.
+        if (activeChanges.length >= 1) {
             issues.push(...checkConflictsViaSequencing(activeChanges, index));
         }
         issues.push(...checkDependsOnConsistency(activeChanges, index));
+        issues.push(...checkFeatureChangeBacklinks(options?.changeId ? targetRecords : allRecords));
         issues.push(...checkDescriptionConsistency(options?.changeId ? targetRecords : allRecords));
         issues.push(...checkDecisionConsistency((options?.changeId ? targetRecords : allRecords).filter((r) => r.type === 'decision'), (options?.changeId ? targetRecords : allRecords).filter((r) => r.type === 'feature')));
     }
@@ -103,6 +153,7 @@ export function verify(index, options) {
         ? issues.filter((i) => i.severity === 'error' || i.severity === 'warning').length === 0
         : issues.filter((i) => i.severity === 'error').length === 0;
     return {
+        schema_version: VERIFY_REPORT_SCHEMA_VERSION,
         scanned_at: new Date().toISOString(),
         total_notes: allRecords.length,
         issues,

package/dist/core/workflow/verify/verify.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -5,6 +5,18 @@ export { analyzeSequencing } from './core/sequencing/analyze.js';
 export { parseNote } from './core/parser/note-parser.js';
 export { propose } from './core/workflow/propose/propose.js';
 export { continueChange } from './core/workflow/continue/continue.js';
+export { applyChange } from './core/workflow/apply/apply.js';
+export { queryWorkflow } from './core/workflow/query/query.js';
+export { revertChange } from './cli/commands/revert.js';
+export type { RevertResult } from './cli/commands/revert.js';
+export { executeMigration } from './core/migrate/migrate.js';
+export { scanOpenSpec } from './core/migrate/scanner.js';
+export { CURRENT_SCHEMA_VERSION, SUPPORTED_SCHEMA_VERSIONS, isSchemaVersionSupported, readSchemaVersion, } from './core/index/schema-version.js';
+export { VERIFY_CODES, VERIFY_REPORT_SCHEMA_VERSION } from './types/verify.js';
+export { ERROR_CODES } from './types/error-codes.js';
+export type { ErrorCode } from './types/error-codes.js';
+export { PROPOSE_RESULT_SCHEMA_VERSION } from './core/workflow/propose/types.js';
+export { ENVELOPE_VERSION } from './cli/json-envelope.js';
 export type { NoteType, ChangeStatus, FeatureStatus, GeneralStatus, } from './types/notes.js';
 export type { BaseFrontmatter, FeatureFrontmatter, ChangeFrontmatter, SystemFrontmatter, DecisionFrontmatter, SourceFrontmatter, QueryFrontmatter, Frontmatter, } from './types/frontmatter.js';
 export type { Requirement, Scenario, } from './types/requirement.js';
@@ -14,4 +26,5 @@ export type { IndexRecord, VaultIndex, IndexWarning, } from './types/index-recor
 export type { RetrievalQuery, Classification, Confidence, ScoredCandidate, SequencingSummary, RetrievalResult, } from './types/retrieval.js';
 export type { NextActionType, NextAction, } from './types/next-action.js';
 export type { VerifyIssue, VerifyReport, IssueSeverity, VerifyDimension, } from './types/verify.js';
+export type { CliJsonEnvelope, ListItem, ListResult, StatusResult, StatusSectionCompleteness, CliErrorPayload, } from './types/cli-contracts.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -6,4 +6,15 @@ export { analyzeSequencing } from './core/sequencing/analyze.js';
 export { parseNote } from './core/parser/note-parser.js';
 export { propose } from './core/workflow/propose/propose.js';
 export { continueChange } from './core/workflow/continue/continue.js';
+export { applyChange } from './core/workflow/apply/apply.js';
+export { queryWorkflow } from './core/workflow/query/query.js';
+export { revertChange } from './cli/commands/revert.js';
+export { executeMigration } from './core/migrate/migrate.js';
+export { scanOpenSpec } from './core/migrate/scanner.js';
+export { CURRENT_SCHEMA_VERSION, SUPPORTED_SCHEMA_VERSIONS, isSchemaVersionSupported, readSchemaVersion, } from './core/index/schema-version.js';
+export { VERIFY_CODES, VERIFY_REPORT_SCHEMA_VERSION } from './types/verify.js';
+export { ERROR_CODES } from './types/error-codes.js';
+export { PROPOSE_RESULT_SCHEMA_VERSION } from './core/workflow/propose/types.js';
+// Envelope version constant — consumers can pin against this to detect drift.
+export { ENVELOPE_VERSION } from './cli/json-envelope.js';
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

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