oncoprintjs 6.1.3 → 6.1.4

package/.turbo/turbo-build.log

@@ -1,13 +1,13 @@
 
-> oncoprintjs@6.1.3 build /home/runner/work/cbioportal-frontend/cbioportal-frontend/packages/oncoprintjs
+> oncoprintjs@6.1.4 build /home/runner/work/cbioportal-frontend/cbioportal-frontend/packages/oncoprintjs
 > cross-env NODE_ENV=production NODE_OPTIONS=--max-old-space-size=2048 pnpm run rollup
 
 
-> oncoprintjs@6.1.3 rollup /home/runner/work/cbioportal-frontend/cbioportal-frontend/packages/oncoprintjs
+> oncoprintjs@6.1.4 rollup /home/runner/work/cbioportal-frontend/cbioportal-frontend/packages/oncoprintjs
 > rollup -c rollup.config.ts
 
 
 src/index.tsx → dist/index.js, dist/index.es.js...
 (!) Circular dependency
 src/js/oncoprinttrackoptionsview.ts -> src/js/oncoprintheaderview.ts -> src/js/oncoprinttrackoptionsview.ts
-created dist/index.js, dist/index.es.js in 20.6s
+created dist/index.js, dist/index.es.js in 19.4s

package/dist/index.es.js

@@ -1,4 +1,4 @@
-import { __awaiter, __generator, __spreadArray, __extends as __extends$1 } from 'tslib';
+import { __awaiter, __generator, __spreadArray, __extends } from 'tslib';
 import $$2 from 'jquery';
 import _, { isNumber } from 'lodash';
 import gl_matrix from 'gl-matrix';
@@ -2852,18 +2852,36 @@ var OncoprintModel = /** @class */ (function () {
             if (nearest_id_index === -1) {
                 return null;
             }
-            // Next, see if it's in a track
+            // Next, see if it's in a track.
+            // Try binary search first for performance, but fall back to linear
+            // scan if the result is invalid. cell_tops may not be monotonically
+            // ordered relative to the tracks array during async clustering
+            // transitions, which causes binary search to return wrong results.
             var tracks = this.getTracks();
             var cell_tops = this.getCellTops();
+            var nearest_track;
             var nearest_track_index = binarysearch(tracks, y, function (track) {
                 return cell_tops[track];
             }, true);
-            if (nearest_track_index === -1) {
-                return null;
+            if (nearest_track_index !== -1) {
+                var candidate = tracks[nearest_track_index];
+                if (y >= cell_tops[candidate] &&
+                    y < cell_tops[candidate] + this.getCellHeight(candidate)) {
+                    nearest_track = candidate;
+                }
+            }
+            if (nearest_track === undefined) {
+                // Binary search failed (tracks out of order) - linear fallback
+                for (var t = 0; t < tracks.length; t++) {
+                    var top_1 = cell_tops[tracks[t]];
+                    if (y >= top_1 &&
+                        y < top_1 + this.getCellHeight(tracks[t])) {
+                        nearest_track = tracks[t];
+                        break;
+                    }
+                }
             }
-            var nearest_track = tracks[nearest_track_index];
-            if (y >= cell_tops[nearest_track] + this.getCellHeight(nearest_track)) {
-                // we know y is past the top of the track (>= cell_tops[nearest_track]), so this checks if y is past the bottom of the track
+            if (nearest_track === undefined) {
                 return null;
             }
             // At this point, we know y is inside a track
@@ -4233,42 +4251,6 @@ function getNumWebGLVertexes(shape) {
     return ret;
 }
 
-/******************************************************************************
-Copyright (c) Microsoft Corporation.
-
-Permission to use, copy, modify, and/or distribute this software for any
-purpose with or without fee is hereby granted.
-
-THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH
-REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY
-AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT,
-INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM
-LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR
-OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
-PERFORMANCE OF THIS SOFTWARE.
-***************************************************************************** */
-/* global Reflect, Promise, SuppressedError, Symbol, Iterator */
-
-var extendStatics = function(d, b) {
-    extendStatics = Object.setPrototypeOf ||
-        ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
-        function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
-    return extendStatics(d, b);
-};
-
-function __extends(d, b) {
-    if (typeof b !== "function" && b !== null)
-        throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
-    extendStatics(d, b);
-    function __() { this.constructor = d; }
-    d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
-}
-
-typeof SuppressedError === "function" ? SuppressedError : function (error, suppressed, message) {
-    var e = new Error(message);
-    return e.name = "SuppressedError", e.error = error, e.suppressed = suppressed, e;
-};
-
 var default_parameter_values = {
     width: 100,
     height: 100,
@@ -8348,7 +8330,7 @@ var RuleSet = /** @class */ (function () {
     return RuleSet;
 }());
 var LookupRuleSet = /** @class */ (function (_super) {
-    __extends$1(LookupRuleSet, _super);
+    __extends(LookupRuleSet, _super);
     function LookupRuleSet() {
         var _this = _super !== null && _super.apply(this, arguments) || this;
         Object.defineProperty(_this, "lookup_map_by_key_and_value", {
@@ -8468,7 +8450,7 @@ var LookupRuleSet = /** @class */ (function (_super) {
     return LookupRuleSet;
 }(RuleSet));
 var ConditionRuleSet = /** @class */ (function (_super) {
-    __extends$1(ConditionRuleSet, _super);
+    __extends(ConditionRuleSet, _super);
     function ConditionRuleSet(params, omitNArule) {
         var _this = _super.call(this, params) || this;
         Object.defineProperty(_this, "rule_id_to_condition", {
@@ -8529,7 +8511,7 @@ var ConditionRuleSet = /** @class */ (function (_super) {
     return ConditionRuleSet;
 }(RuleSet));
 var CategoricalRuleSet = /** @class */ (function (_super) {
-    __extends$1(CategoricalRuleSet, _super);
+    __extends(CategoricalRuleSet, _super);
     function CategoricalRuleSet(params, omitNArule) {
         var _this = _super.call(this, params) || this;
         Object.defineProperty(_this, "category_key", {
@@ -8635,7 +8617,7 @@ var LinearInterpRangeType;
     LinearInterpRangeType["NON_POSITIVE"] = "NON_POSITIVE";
 })(LinearInterpRangeType || (LinearInterpRangeType = {}));
 var LinearInterpRuleSet = /** @class */ (function (_super) {
-    __extends$1(LinearInterpRuleSet, _super);
+    __extends(LinearInterpRuleSet, _super);
     function LinearInterpRuleSet(params) {
         var _this = _super.call(this, params) || this;
         Object.defineProperty(_this, "value_key", {
@@ -8800,7 +8782,7 @@ var LinearInterpRuleSet = /** @class */ (function (_super) {
     return LinearInterpRuleSet;
 }(ConditionRuleSet));
 var GradientRuleSet = /** @class */ (function (_super) {
-    __extends$1(GradientRuleSet, _super);
+    __extends(GradientRuleSet, _super);
     function GradientRuleSet(params) {
         var _a;
         var _this = _super.call(this, params) || this;
@@ -8946,7 +8928,7 @@ var GradientRuleSet = /** @class */ (function (_super) {
     return GradientRuleSet;
 }(LinearInterpRuleSet));
 var BarRuleSet = /** @class */ (function (_super) {
-    __extends$1(BarRuleSet, _super);
+    __extends(BarRuleSet, _super);
     function BarRuleSet(params) {
         var _this = _super.call(this, params) || this;
         Object.defineProperty(_this, "fill", {
@@ -9075,7 +9057,7 @@ var BarRuleSet = /** @class */ (function (_super) {
     return BarRuleSet;
 }(LinearInterpRuleSet));
 var StackedBarRuleSet = /** @class */ (function (_super) {
-    __extends$1(StackedBarRuleSet, _super);
+    __extends(StackedBarRuleSet, _super);
     function StackedBarRuleSet(params) {
         var _this = _super.call(this, params) || this;
         var value_key = params.value_key;
@@ -9137,7 +9119,7 @@ var StackedBarRuleSet = /** @class */ (function (_super) {
     return StackedBarRuleSet;
 }(ConditionRuleSet));
 var GeneticAlterationRuleSet = /** @class */ (function (_super) {
-    __extends$1(GeneticAlterationRuleSet, _super);
+    __extends(GeneticAlterationRuleSet, _super);
     function GeneticAlterationRuleSet(params) {
         var _this = _super.call(this, params) || this;
         _this.addRulesFromParams(params);
@@ -9282,7 +9264,7 @@ var Rule = /** @class */ (function () {
     return Rule;
 }());
 var GradientCategoricalRuleSet = /** @class */ (function (_super) {
-    __extends$1(GradientCategoricalRuleSet, _super);
+    __extends(GradientCategoricalRuleSet, _super);
     function GradientCategoricalRuleSet(params) {
         var _this = _super.call(this, params) || this;
         Object.defineProperty(_this, "gradientRuleSet", {