okstra 0.130.4 → 0.131.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (365) hide show
  1. package/README.md +0 -1
  2. package/docs/architecture.md +2 -2
  3. package/docs/cli.md +1 -1
  4. package/docs/for-ai/README.md +0 -2
  5. package/docs/for-ai/skills/okstra-run.md +13 -2
  6. package/docs/for-ai/skills/okstra-setup.md +4 -1
  7. package/docs/project-structure-overview.md +5 -4
  8. package/docs/task-process/implementation-planning.md +13 -0
  9. package/docs/task-process/implementation.md +17 -2
  10. package/package.json +1 -1
  11. package/runtime/BUILD.json +2 -2
  12. package/runtime/agents/workers/report-writer-worker.md +7 -0
  13. package/runtime/bin/lib/okstra/usage.sh +4 -4
  14. package/runtime/prompts/lead/okstra-lead-contract.md +2 -2
  15. package/runtime/prompts/lead/plan-body-verification.md +26 -5
  16. package/runtime/prompts/lead/report-writer.md +6 -2
  17. package/runtime/prompts/profiles/_common-contract.md +2 -1
  18. package/runtime/prompts/profiles/_implementation-deliverable.md +6 -1
  19. package/runtime/prompts/profiles/_implementation-executor.md +2 -2
  20. package/runtime/prompts/profiles/_implementation-verifier.md +33 -10
  21. package/runtime/prompts/profiles/final-verification.md +21 -6
  22. package/runtime/prompts/profiles/implementation-planning.md +16 -4
  23. package/runtime/python/okstra_ctl/codex_dispatch.py +31 -0
  24. package/runtime/python/okstra_ctl/conformance.py +49 -11
  25. package/runtime/python/okstra_ctl/report_finalize.py +52 -1
  26. package/runtime/python/okstra_ctl/run.py +15 -3
  27. package/runtime/python/okstra_ctl/worker_prompt_contract.py +14 -6
  28. package/runtime/python/okstra_ctl/worker_prompt_policy.py +19 -1
  29. package/runtime/python/okstra_vendor/__init__.py +0 -44
  30. package/runtime/schemas/final-report-v1.0.schema.json +99 -5
  31. package/runtime/skills/okstra-run/SKILL.md +11 -4
  32. package/runtime/skills/okstra-setup/SKILL.md +3 -2
  33. package/runtime/skills/okstra-setup/references/project-config.md +16 -7
  34. package/runtime/templates/reports/final-report.template.md +15 -9
  35. package/runtime/templates/reports/i18n/en.json +1 -0
  36. package/runtime/templates/reports/i18n/ko.json +1 -0
  37. package/runtime/validators/lib/fixtures.sh +6 -0
  38. package/runtime/validators/validate-run.py +1722 -98
  39. package/src/cli-registry.mjs +0 -7
  40. package/src/commands/lifecycle/doctor.mjs +0 -9
  41. package/src/lib/skill-catalog.mjs +0 -1
  42. package/docs/for-ai/skills/okstra-graphify.md +0 -64
  43. package/runtime/python/okstra_ctl/graphify_cmd.py +0 -225
  44. package/runtime/python/okstra_vendor/graphify/.vendored-version +0 -1
  45. package/runtime/python/okstra_vendor/graphify/__init__.py +0 -28
  46. package/runtime/python/okstra_vendor/graphify/__main__.py +0 -1371
  47. package/runtime/python/okstra_vendor/graphify/analyze.py +0 -540
  48. package/runtime/python/okstra_vendor/graphify/benchmark.py +0 -129
  49. package/runtime/python/okstra_vendor/graphify/build.py +0 -107
  50. package/runtime/python/okstra_vendor/graphify/cache.py +0 -169
  51. package/runtime/python/okstra_vendor/graphify/cluster.py +0 -137
  52. package/runtime/python/okstra_vendor/graphify/detect.py +0 -510
  53. package/runtime/python/okstra_vendor/graphify/export.py +0 -1014
  54. package/runtime/python/okstra_vendor/graphify/extract.py +0 -3277
  55. package/runtime/python/okstra_vendor/graphify/hooks.py +0 -220
  56. package/runtime/python/okstra_vendor/graphify/ingest.py +0 -297
  57. package/runtime/python/okstra_vendor/graphify/manifest.py +0 -4
  58. package/runtime/python/okstra_vendor/graphify/report.py +0 -175
  59. package/runtime/python/okstra_vendor/graphify/security.py +0 -203
  60. package/runtime/python/okstra_vendor/graphify/serve.py +0 -373
  61. package/runtime/python/okstra_vendor/graphify/skill-aider.md +0 -1184
  62. package/runtime/python/okstra_vendor/graphify/skill-claw.md +0 -1184
  63. package/runtime/python/okstra_vendor/graphify/skill-codex.md +0 -1242
  64. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +0 -1268
  65. package/runtime/python/okstra_vendor/graphify/skill-droid.md +0 -1239
  66. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +0 -1183
  67. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +0 -1238
  68. package/runtime/python/okstra_vendor/graphify/skill-trae.md +0 -1208
  69. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +0 -253
  70. package/runtime/python/okstra_vendor/graphify/skill-windows.md +0 -1245
  71. package/runtime/python/okstra_vendor/graphify/skill.md +0 -1319
  72. package/runtime/python/okstra_vendor/graphify/transcribe.py +0 -182
  73. package/runtime/python/okstra_vendor/graphify/validate.py +0 -72
  74. package/runtime/python/okstra_vendor/graphify/watch.py +0 -188
  75. package/runtime/python/okstra_vendor/graphify/wiki.py +0 -214
  76. package/runtime/python/okstra_vendor/networkx/__init__.py +0 -62
  77. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +0 -134
  78. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +0 -26
  79. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +0 -259
  80. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +0 -71
  81. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +0 -412
  82. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +0 -396
  83. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +0 -150
  84. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +0 -149
  85. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +0 -369
  86. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +0 -44
  87. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +0 -143
  88. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +0 -53
  89. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +0 -265
  90. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +0 -1508
  91. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +0 -255
  92. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +0 -83
  93. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +0 -5
  94. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +0 -122
  95. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +0 -302
  96. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +0 -255
  97. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +0 -160
  98. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +0 -127
  99. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +0 -164
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +0 -88
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +0 -322
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +0 -290
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +0 -289
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +0 -57
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +0 -360
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +0 -105
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +0 -603
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +0 -316
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +0 -590
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +0 -232
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +0 -526
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +0 -112
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +0 -69
  114. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +0 -168
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +0 -205
  116. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +0 -164
  117. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +0 -20
  118. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +0 -591
  119. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +0 -236
  120. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +0 -282
  121. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +0 -364
  122. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +0 -227
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +0 -96
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +0 -150
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +0 -107
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +0 -357
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +0 -130
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +0 -787
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +0 -88
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +0 -331
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +0 -150
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +0 -200
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +0 -128
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +0 -209
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +0 -141
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +0 -361
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +0 -181
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +0 -95
  139. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +0 -172
  140. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +0 -443
  141. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +0 -818
  142. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +0 -732
  143. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +0 -4
  144. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +0 -505
  145. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +0 -565
  146. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +0 -163
  147. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +0 -28
  148. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +0 -153
  149. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +0 -354
  150. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +0 -171
  151. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +0 -30
  152. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +0 -216
  153. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +0 -79
  154. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +0 -338
  155. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +0 -162
  156. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +0 -220
  157. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +0 -384
  158. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +0 -227
  159. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +0 -452
  160. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +0 -347
  161. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +0 -6
  162. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +0 -115
  163. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +0 -394
  164. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +0 -282
  165. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +0 -71
  166. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +0 -359
  167. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +0 -196
  168. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +0 -11
  169. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +0 -811
  170. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +0 -616
  171. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +0 -408
  172. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +0 -1270
  173. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +0 -592
  174. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +0 -220
  175. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +0 -235
  176. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +0 -152
  177. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +0 -88
  178. package/runtime/python/okstra_vendor/networkx/algorithms/core.py +0 -588
  179. package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +0 -142
  180. package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +0 -416
  181. package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +0 -1234
  182. package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +0 -677
  183. package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +0 -1392
  184. package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +0 -1095
  185. package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +0 -272
  186. package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +0 -142
  187. package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +0 -268
  188. package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +0 -167
  189. package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +0 -470
  190. package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +0 -11
  191. package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +0 -370
  192. package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +0 -407
  193. package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +0 -238
  194. package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +0 -241
  195. package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +0 -178
  196. package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +0 -611
  197. package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +0 -356
  198. package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +0 -662
  199. package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +0 -425
  200. package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +0 -300
  201. package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +0 -194
  202. package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +0 -435
  203. package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +0 -483
  204. package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +0 -57
  205. package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +0 -196
  206. package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +0 -107
  207. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +0 -7
  208. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +0 -1306
  209. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +0 -336
  210. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +0 -1262
  211. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +0 -352
  212. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +0 -308
  213. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +0 -264
  214. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +0 -1102
  215. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +0 -192
  216. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +0 -2
  217. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +0 -337
  218. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +0 -498
  219. package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +0 -687
  220. package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +0 -280
  221. package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +0 -1148
  222. package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +0 -27
  223. package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +0 -738
  224. package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +0 -78
  225. package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +0 -59
  226. package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +0 -219
  227. package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +0 -155
  228. package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +0 -4
  229. package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +0 -324
  230. package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +0 -468
  231. package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +0 -633
  232. package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +0 -77
  233. package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +0 -73
  234. package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +0 -464
  235. package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +0 -1463
  236. package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +0 -306
  237. package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +0 -98
  238. package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +0 -167
  239. package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +0 -138
  240. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +0 -5
  241. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +0 -239
  242. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +0 -264
  243. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +0 -716
  244. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +0 -625
  245. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +0 -2542
  246. package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +0 -2107
  247. package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +0 -966
  248. package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +0 -404
  249. package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +0 -30
  250. package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +0 -296
  251. package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +0 -374
  252. package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +0 -564
  253. package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +0 -406
  254. package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +0 -981
  255. package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +0 -142
  256. package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +0 -406
  257. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +0 -5
  258. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +0 -90
  259. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +0 -576
  260. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +0 -529
  261. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +0 -185
  262. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgedfs.py +0 -182
  263. package/runtime/python/okstra_vendor/networkx/algorithms/tree/__init__.py +0 -7
  264. package/runtime/python/okstra_vendor/networkx/algorithms/tree/branchings.py +0 -1042
  265. package/runtime/python/okstra_vendor/networkx/algorithms/tree/coding.py +0 -413
  266. package/runtime/python/okstra_vendor/networkx/algorithms/tree/decomposition.py +0 -88
  267. package/runtime/python/okstra_vendor/networkx/algorithms/tree/distance_measures.py +0 -219
  268. package/runtime/python/okstra_vendor/networkx/algorithms/tree/mst.py +0 -1281
  269. package/runtime/python/okstra_vendor/networkx/algorithms/tree/operations.py +0 -106
  270. package/runtime/python/okstra_vendor/networkx/algorithms/tree/recognition.py +0 -273
  271. package/runtime/python/okstra_vendor/networkx/algorithms/triads.py +0 -500
  272. package/runtime/python/okstra_vendor/networkx/algorithms/vitality.py +0 -76
  273. package/runtime/python/okstra_vendor/networkx/algorithms/voronoi.py +0 -86
  274. package/runtime/python/okstra_vendor/networkx/algorithms/walks.py +0 -77
  275. package/runtime/python/okstra_vendor/networkx/algorithms/wiener.py +0 -278
  276. package/runtime/python/okstra_vendor/networkx/classes/__init__.py +0 -13
  277. package/runtime/python/okstra_vendor/networkx/classes/coreviews.py +0 -435
  278. package/runtime/python/okstra_vendor/networkx/classes/digraph.py +0 -1363
  279. package/runtime/python/okstra_vendor/networkx/classes/filters.py +0 -95
  280. package/runtime/python/okstra_vendor/networkx/classes/function.py +0 -1549
  281. package/runtime/python/okstra_vendor/networkx/classes/graph.py +0 -2082
  282. package/runtime/python/okstra_vendor/networkx/classes/graphviews.py +0 -269
  283. package/runtime/python/okstra_vendor/networkx/classes/multidigraph.py +0 -977
  284. package/runtime/python/okstra_vendor/networkx/classes/multigraph.py +0 -1294
  285. package/runtime/python/okstra_vendor/networkx/classes/reportviews.py +0 -1447
  286. package/runtime/python/okstra_vendor/networkx/convert.py +0 -502
  287. package/runtime/python/okstra_vendor/networkx/convert_matrix.py +0 -1314
  288. package/runtime/python/okstra_vendor/networkx/drawing/__init__.py +0 -7
  289. package/runtime/python/okstra_vendor/networkx/drawing/layout.py +0 -2036
  290. package/runtime/python/okstra_vendor/networkx/drawing/nx_agraph.py +0 -470
  291. package/runtime/python/okstra_vendor/networkx/drawing/nx_latex.py +0 -570
  292. package/runtime/python/okstra_vendor/networkx/drawing/nx_pydot.py +0 -361
  293. package/runtime/python/okstra_vendor/networkx/drawing/nx_pylab.py +0 -2978
  294. package/runtime/python/okstra_vendor/networkx/exception.py +0 -131
  295. package/runtime/python/okstra_vendor/networkx/generators/__init__.py +0 -34
  296. package/runtime/python/okstra_vendor/networkx/generators/atlas.dat.gz +0 -0
  297. package/runtime/python/okstra_vendor/networkx/generators/atlas.py +0 -227
  298. package/runtime/python/okstra_vendor/networkx/generators/classic.py +0 -1091
  299. package/runtime/python/okstra_vendor/networkx/generators/cographs.py +0 -68
  300. package/runtime/python/okstra_vendor/networkx/generators/community.py +0 -1070
  301. package/runtime/python/okstra_vendor/networkx/generators/degree_seq.py +0 -886
  302. package/runtime/python/okstra_vendor/networkx/generators/directed.py +0 -572
  303. package/runtime/python/okstra_vendor/networkx/generators/duplication.py +0 -174
  304. package/runtime/python/okstra_vendor/networkx/generators/ego.py +0 -66
  305. package/runtime/python/okstra_vendor/networkx/generators/expanders.py +0 -499
  306. package/runtime/python/okstra_vendor/networkx/generators/geometric.py +0 -1037
  307. package/runtime/python/okstra_vendor/networkx/generators/harary_graph.py +0 -163
  308. package/runtime/python/okstra_vendor/networkx/generators/internet_as_graphs.py +0 -443
  309. package/runtime/python/okstra_vendor/networkx/generators/intersection.py +0 -125
  310. package/runtime/python/okstra_vendor/networkx/generators/interval_graph.py +0 -70
  311. package/runtime/python/okstra_vendor/networkx/generators/joint_degree_seq.py +0 -664
  312. package/runtime/python/okstra_vendor/networkx/generators/lattice.py +0 -405
  313. package/runtime/python/okstra_vendor/networkx/generators/line.py +0 -501
  314. package/runtime/python/okstra_vendor/networkx/generators/mycielski.py +0 -110
  315. package/runtime/python/okstra_vendor/networkx/generators/nonisomorphic_trees.py +0 -259
  316. package/runtime/python/okstra_vendor/networkx/generators/random_clustered.py +0 -117
  317. package/runtime/python/okstra_vendor/networkx/generators/random_graphs.py +0 -1416
  318. package/runtime/python/okstra_vendor/networkx/generators/small.py +0 -1070
  319. package/runtime/python/okstra_vendor/networkx/generators/social.py +0 -554
  320. package/runtime/python/okstra_vendor/networkx/generators/spectral_graph_forge.py +0 -120
  321. package/runtime/python/okstra_vendor/networkx/generators/stochastic.py +0 -54
  322. package/runtime/python/okstra_vendor/networkx/generators/sudoku.py +0 -131
  323. package/runtime/python/okstra_vendor/networkx/generators/time_series.py +0 -74
  324. package/runtime/python/okstra_vendor/networkx/generators/trees.py +0 -1070
  325. package/runtime/python/okstra_vendor/networkx/generators/triads.py +0 -94
  326. package/runtime/python/okstra_vendor/networkx/lazy_imports.py +0 -188
  327. package/runtime/python/okstra_vendor/networkx/linalg/__init__.py +0 -13
  328. package/runtime/python/okstra_vendor/networkx/linalg/algebraicconnectivity.py +0 -650
  329. package/runtime/python/okstra_vendor/networkx/linalg/attrmatrix.py +0 -466
  330. package/runtime/python/okstra_vendor/networkx/linalg/bethehessianmatrix.py +0 -77
  331. package/runtime/python/okstra_vendor/networkx/linalg/graphmatrix.py +0 -168
  332. package/runtime/python/okstra_vendor/networkx/linalg/laplacianmatrix.py +0 -512
  333. package/runtime/python/okstra_vendor/networkx/linalg/modularitymatrix.py +0 -166
  334. package/runtime/python/okstra_vendor/networkx/linalg/spectrum.py +0 -186
  335. package/runtime/python/okstra_vendor/networkx/readwrite/__init__.py +0 -17
  336. package/runtime/python/okstra_vendor/networkx/readwrite/adjlist.py +0 -330
  337. package/runtime/python/okstra_vendor/networkx/readwrite/edgelist.py +0 -489
  338. package/runtime/python/okstra_vendor/networkx/readwrite/gexf.py +0 -1084
  339. package/runtime/python/okstra_vendor/networkx/readwrite/gml.py +0 -879
  340. package/runtime/python/okstra_vendor/networkx/readwrite/graph6.py +0 -427
  341. package/runtime/python/okstra_vendor/networkx/readwrite/graphml.py +0 -1053
  342. package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/__init__.py +0 -19
  343. package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/adjacency.py +0 -156
  344. package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/cytoscape.py +0 -190
  345. package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/node_link.py +0 -261
  346. package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tree.py +0 -137
  347. package/runtime/python/okstra_vendor/networkx/readwrite/leda.py +0 -108
  348. package/runtime/python/okstra_vendor/networkx/readwrite/multiline_adjlist.py +0 -393
  349. package/runtime/python/okstra_vendor/networkx/readwrite/p2g.py +0 -113
  350. package/runtime/python/okstra_vendor/networkx/readwrite/pajek.py +0 -286
  351. package/runtime/python/okstra_vendor/networkx/readwrite/sparse6.py +0 -379
  352. package/runtime/python/okstra_vendor/networkx/readwrite/text.py +0 -851
  353. package/runtime/python/okstra_vendor/networkx/relabel.py +0 -285
  354. package/runtime/python/okstra_vendor/networkx/utils/__init__.py +0 -8
  355. package/runtime/python/okstra_vendor/networkx/utils/backends.py +0 -2171
  356. package/runtime/python/okstra_vendor/networkx/utils/configs.py +0 -396
  357. package/runtime/python/okstra_vendor/networkx/utils/decorators.py +0 -1233
  358. package/runtime/python/okstra_vendor/networkx/utils/heaps.py +0 -338
  359. package/runtime/python/okstra_vendor/networkx/utils/mapped_queue.py +0 -297
  360. package/runtime/python/okstra_vendor/networkx/utils/misc.py +0 -703
  361. package/runtime/python/okstra_vendor/networkx/utils/random_sequence.py +0 -198
  362. package/runtime/python/okstra_vendor/networkx/utils/rcm.py +0 -159
  363. package/runtime/python/okstra_vendor/networkx/utils/union_find.py +0 -106
  364. package/runtime/skills/okstra-graphify/SKILL.md +0 -169
  365. package/src/commands/graphify.mjs +0 -32
@@ -1,370 +0,0 @@
1
- """
2
- Boykov-Kolmogorov algorithm for maximum flow problems.
3
- """
4
-
5
- from collections import deque
6
- from operator import itemgetter
7
-
8
- import networkx as nx
9
- from networkx.algorithms.flow.utils import build_residual_network
10
-
11
- __all__ = ["boykov_kolmogorov"]
12
-
13
-
14
- @nx._dispatchable(edge_attrs={"capacity": float("inf")}, returns_graph=True)
15
- def boykov_kolmogorov(
16
- G, s, t, capacity="capacity", residual=None, value_only=False, cutoff=None
17
- ):
18
- r"""Find a maximum single-commodity flow using Boykov-Kolmogorov algorithm.
19
-
20
- This function returns the residual network resulting after computing
21
- the maximum flow. See below for details about the conventions
22
- NetworkX uses for defining residual networks.
23
-
24
- This algorithm has worse case complexity $O(n^2 m |C|)$ for $n$ nodes, $m$
25
- edges, and $|C|$ the cost of the minimum cut [1]_. This implementation
26
- uses the marking heuristic defined in [2]_ which improves its running
27
- time in many practical problems.
28
-
29
- Parameters
30
- ----------
31
- G : NetworkX graph
32
- Edges of the graph are expected to have an attribute called
33
- 'capacity'. If this attribute is not present, the edge is
34
- considered to have infinite capacity.
35
-
36
- s : node
37
- Source node for the flow.
38
-
39
- t : node
40
- Sink node for the flow.
41
-
42
- capacity : string
43
- Edges of the graph G are expected to have an attribute capacity
44
- that indicates how much flow the edge can support. If this
45
- attribute is not present, the edge is considered to have
46
- infinite capacity. Default value: 'capacity'.
47
-
48
- residual : NetworkX graph
49
- Residual network on which the algorithm is to be executed. If None, a
50
- new residual network is created. Default value: None.
51
-
52
- value_only : bool
53
- If True compute only the value of the maximum flow. This parameter
54
- will be ignored by this algorithm because it is not applicable.
55
-
56
- cutoff : integer, float
57
- If specified, the algorithm will terminate when the flow value reaches
58
- or exceeds the cutoff. In this case, it may be unable to immediately
59
- determine a minimum cut. Default value: None.
60
-
61
- Returns
62
- -------
63
- R : NetworkX DiGraph
64
- Residual network after computing the maximum flow.
65
-
66
- Raises
67
- ------
68
- NetworkXError
69
- The algorithm does not support MultiGraph and MultiDiGraph. If
70
- the input graph is an instance of one of these two classes, a
71
- NetworkXError is raised.
72
-
73
- NetworkXUnbounded
74
- If the graph has a path of infinite capacity, the value of a
75
- feasible flow on the graph is unbounded above and the function
76
- raises a NetworkXUnbounded.
77
-
78
- See also
79
- --------
80
- :meth:`maximum_flow`
81
- :meth:`minimum_cut`
82
- :meth:`preflow_push`
83
- :meth:`shortest_augmenting_path`
84
-
85
- Notes
86
- -----
87
- The residual network :samp:`R` from an input graph :samp:`G` has the
88
- same nodes as :samp:`G`. :samp:`R` is a DiGraph that contains a pair
89
- of edges :samp:`(u, v)` and :samp:`(v, u)` iff :samp:`(u, v)` is not a
90
- self-loop, and at least one of :samp:`(u, v)` and :samp:`(v, u)` exists
91
- in :samp:`G`.
92
-
93
- For each edge :samp:`(u, v)` in :samp:`R`, :samp:`R[u][v]['capacity']`
94
- is equal to the capacity of :samp:`(u, v)` in :samp:`G` if it exists
95
- in :samp:`G` or zero otherwise. If the capacity is infinite,
96
- :samp:`R[u][v]['capacity']` will have a high arbitrary finite value
97
- that does not affect the solution of the problem. This value is stored in
98
- :samp:`R.graph['inf']`. For each edge :samp:`(u, v)` in :samp:`R`,
99
- :samp:`R[u][v]['flow']` represents the flow function of :samp:`(u, v)` and
100
- satisfies :samp:`R[u][v]['flow'] == -R[v][u]['flow']`.
101
-
102
- The flow value, defined as the total flow into :samp:`t`, the sink, is
103
- stored in :samp:`R.graph['flow_value']`. If :samp:`cutoff` is not
104
- specified, reachability to :samp:`t` using only edges :samp:`(u, v)` such
105
- that :samp:`R[u][v]['flow'] < R[u][v]['capacity']` induces a minimum
106
- :samp:`s`-:samp:`t` cut.
107
-
108
- Examples
109
- --------
110
- >>> from networkx.algorithms.flow import boykov_kolmogorov
111
-
112
- The functions that implement flow algorithms and output a residual
113
- network, such as this one, are not imported to the base NetworkX
114
- namespace, so you have to explicitly import them from the flow package.
115
-
116
- >>> G = nx.DiGraph()
117
- >>> G.add_edge("x", "a", capacity=3.0)
118
- >>> G.add_edge("x", "b", capacity=1.0)
119
- >>> G.add_edge("a", "c", capacity=3.0)
120
- >>> G.add_edge("b", "c", capacity=5.0)
121
- >>> G.add_edge("b", "d", capacity=4.0)
122
- >>> G.add_edge("d", "e", capacity=2.0)
123
- >>> G.add_edge("c", "y", capacity=2.0)
124
- >>> G.add_edge("e", "y", capacity=3.0)
125
- >>> R = boykov_kolmogorov(G, "x", "y")
126
- >>> flow_value = nx.maximum_flow_value(G, "x", "y")
127
- >>> flow_value
128
- 3.0
129
- >>> flow_value == R.graph["flow_value"]
130
- True
131
-
132
- A nice feature of the Boykov-Kolmogorov algorithm is that a partition
133
- of the nodes that defines a minimum cut can be easily computed based
134
- on the search trees used during the algorithm. These trees are stored
135
- in the graph attribute `trees` of the residual network.
136
-
137
- >>> source_tree, target_tree = R.graph["trees"]
138
- >>> partition = (set(source_tree), set(G) - set(source_tree))
139
-
140
- Or equivalently:
141
-
142
- >>> partition = (set(G) - set(target_tree), set(target_tree))
143
-
144
- References
145
- ----------
146
- .. [1] Boykov, Y., & Kolmogorov, V. (2004). An experimental comparison
147
- of min-cut/max-flow algorithms for energy minimization in vision.
148
- Pattern Analysis and Machine Intelligence, IEEE Transactions on,
149
- 26(9), 1124-1137.
150
- https://doi.org/10.1109/TPAMI.2004.60
151
-
152
- .. [2] Vladimir Kolmogorov. Graph-based Algorithms for Multi-camera
153
- Reconstruction Problem. PhD thesis, Cornell University, CS Department,
154
- 2003. pp. 109-114.
155
- https://web.archive.org/web/20170809091249/https://pub.ist.ac.at/~vnk/papers/thesis.pdf
156
-
157
- """
158
- R = boykov_kolmogorov_impl(G, s, t, capacity, residual, cutoff)
159
- R.graph["algorithm"] = "boykov_kolmogorov"
160
- nx._clear_cache(R)
161
- return R
162
-
163
-
164
- def boykov_kolmogorov_impl(G, s, t, capacity, residual, cutoff):
165
- if s not in G:
166
- raise nx.NetworkXError(f"node {str(s)} not in graph")
167
- if t not in G:
168
- raise nx.NetworkXError(f"node {str(t)} not in graph")
169
- if s == t:
170
- raise nx.NetworkXError("source and sink are the same node")
171
-
172
- if residual is None:
173
- R = build_residual_network(G, capacity)
174
- else:
175
- R = residual
176
-
177
- # Initialize/reset the residual network.
178
- # This is way too slow
179
- # nx.set_edge_attributes(R, 0, 'flow')
180
- for u in R:
181
- for e in R[u].values():
182
- e["flow"] = 0
183
-
184
- # Use an arbitrary high value as infinite. It is computed
185
- # when building the residual network.
186
- INF = R.graph["inf"]
187
-
188
- if cutoff is None:
189
- cutoff = INF
190
-
191
- R_succ = R.succ
192
- R_pred = R.pred
193
-
194
- def grow():
195
- """Bidirectional breadth-first search for the growth stage.
196
-
197
- Returns a connecting edge, that is and edge that connects
198
- a node from the source search tree with a node from the
199
- target search tree.
200
- The first node in the connecting edge is always from the
201
- source tree and the last node from the target tree.
202
- """
203
- while active:
204
- u = active[0]
205
- if u in source_tree:
206
- this_tree = source_tree
207
- other_tree = target_tree
208
- neighbors = R_succ
209
- else:
210
- this_tree = target_tree
211
- other_tree = source_tree
212
- neighbors = R_pred
213
- for v, attr in neighbors[u].items():
214
- if attr["capacity"] - attr["flow"] > 0:
215
- if v not in this_tree:
216
- if v in other_tree:
217
- return (u, v) if this_tree is source_tree else (v, u)
218
- this_tree[v] = u
219
- dist[v] = dist[u] + 1
220
- timestamp[v] = timestamp[u]
221
- active.append(v)
222
- elif v in this_tree and _is_closer(u, v):
223
- this_tree[v] = u
224
- dist[v] = dist[u] + 1
225
- timestamp[v] = timestamp[u]
226
- _ = active.popleft()
227
- return None, None
228
-
229
- def augment(u, v):
230
- """Augmentation stage.
231
-
232
- Reconstruct path and determine its residual capacity.
233
- We start from a connecting edge, which links a node
234
- from the source tree to a node from the target tree.
235
- The connecting edge is the output of the grow function
236
- and the input of this function.
237
- """
238
- attr = R_succ[u][v]
239
- flow = min(INF, attr["capacity"] - attr["flow"])
240
- path = [u]
241
- # Trace a path from u to s in source_tree.
242
- w = u
243
- while w != s:
244
- n = w
245
- w = source_tree[n]
246
- attr = R_pred[n][w]
247
- flow = min(flow, attr["capacity"] - attr["flow"])
248
- path.append(w)
249
- path.reverse()
250
- # Trace a path from v to t in target_tree.
251
- path.append(v)
252
- w = v
253
- while w != t:
254
- n = w
255
- w = target_tree[n]
256
- attr = R_succ[n][w]
257
- flow = min(flow, attr["capacity"] - attr["flow"])
258
- path.append(w)
259
- # Augment flow along the path and check for saturated edges.
260
- it = iter(path)
261
- u = next(it)
262
- these_orphans = []
263
- for v in it:
264
- R_succ[u][v]["flow"] += flow
265
- R_succ[v][u]["flow"] -= flow
266
- if R_succ[u][v]["flow"] == R_succ[u][v]["capacity"]:
267
- if v in source_tree:
268
- source_tree[v] = None
269
- these_orphans.append(v)
270
- if u in target_tree:
271
- target_tree[u] = None
272
- these_orphans.append(u)
273
- u = v
274
- orphans.extend(sorted(these_orphans, key=dist.get))
275
- return flow
276
-
277
- def adopt():
278
- """Adoption stage.
279
-
280
- Reconstruct search trees by adopting or discarding orphans.
281
- During augmentation stage some edges got saturated and thus
282
- the source and target search trees broke down to forests, with
283
- orphans as roots of some of its trees. We have to reconstruct
284
- the search trees rooted to source and target before we can grow
285
- them again.
286
- """
287
- while orphans:
288
- u = orphans.popleft()
289
- if u in source_tree:
290
- tree = source_tree
291
- neighbors = R_pred
292
- else:
293
- tree = target_tree
294
- neighbors = R_succ
295
- nbrs = ((n, attr, dist[n]) for n, attr in neighbors[u].items() if n in tree)
296
- for v, attr, d in sorted(nbrs, key=itemgetter(2)):
297
- if attr["capacity"] - attr["flow"] > 0:
298
- if _has_valid_root(v, tree):
299
- tree[u] = v
300
- dist[u] = dist[v] + 1
301
- timestamp[u] = time
302
- break
303
- else:
304
- nbrs = (
305
- (n, attr, dist[n]) for n, attr in neighbors[u].items() if n in tree
306
- )
307
- for v, attr, d in sorted(nbrs, key=itemgetter(2)):
308
- if attr["capacity"] - attr["flow"] > 0:
309
- if v not in active:
310
- active.append(v)
311
- if tree[v] == u:
312
- tree[v] = None
313
- orphans.appendleft(v)
314
- if u in active:
315
- active.remove(u)
316
- del tree[u]
317
-
318
- def _has_valid_root(n, tree):
319
- path = []
320
- v = n
321
- while v is not None:
322
- path.append(v)
323
- if v in (s, t):
324
- base_dist = 0
325
- break
326
- elif timestamp[v] == time:
327
- base_dist = dist[v]
328
- break
329
- v = tree[v]
330
- else:
331
- return False
332
- length = len(path)
333
- for i, u in enumerate(path, 1):
334
- dist[u] = base_dist + length - i
335
- timestamp[u] = time
336
- return True
337
-
338
- def _is_closer(u, v):
339
- return timestamp[v] <= timestamp[u] and dist[v] > dist[u] + 1
340
-
341
- source_tree = {s: None}
342
- target_tree = {t: None}
343
- active = deque([s, t])
344
- orphans = deque()
345
- flow_value = 0
346
- # data structures for the marking heuristic
347
- time = 1
348
- timestamp = {s: time, t: time}
349
- dist = {s: 0, t: 0}
350
- while flow_value < cutoff:
351
- # Growth stage
352
- u, v = grow()
353
- if u is None:
354
- break
355
- time += 1
356
- # Augmentation stage
357
- flow_value += augment(u, v)
358
- # Adoption stage
359
- adopt()
360
-
361
- if flow_value * 2 > INF:
362
- raise nx.NetworkXUnbounded("Infinite capacity path, flow unbounded above.")
363
-
364
- # Add source and target tree in a graph attribute.
365
- # A partition that defines a minimum cut can be directly
366
- # computed from the search trees as explained in the docstrings.
367
- R.graph["trees"] = (source_tree, target_tree)
368
- # Add the standard flow_value graph attribute.
369
- R.graph["flow_value"] = flow_value
370
- return R