okstra 0.130.4 → 0.131.0

package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py

@@ -1,167 +0,0 @@
-"""Provides functions for computing the efficiency of nodes and graphs."""
-
-import networkx as nx
-from networkx.exception import NetworkXNoPath
-
-from ..utils import not_implemented_for
-
-__all__ = ["efficiency", "local_efficiency", "global_efficiency"]
-
-
-@not_implemented_for("directed")
-@nx._dispatchable
-def efficiency(G, u, v):
-    """Returns the efficiency of a pair of nodes in a graph.
-
-    The *efficiency* of a pair of nodes is the multiplicative inverse of the
-    shortest path distance between the nodes [1]_. Returns 0 if no path
-    between nodes.
-
-    Parameters
-    ----------
-    G : :class:`networkx.Graph`
-        An undirected graph for which to compute the average local efficiency.
-    u, v : node
-        Nodes in the graph ``G``.
-
-    Returns
-    -------
-    float
-        Multiplicative inverse of the shortest path distance between the nodes.
-
-    Examples
-    --------
-    >>> G = nx.Graph([(0, 1), (0, 2), (0, 3), (1, 2), (1, 3)])
-    >>> nx.efficiency(G, 2, 3)  # this gives efficiency for node 2 and 3
-    0.5
-
-    Notes
-    -----
-    Edge weights are ignored when computing the shortest path distances.
-
-    See also
-    --------
-    local_efficiency
-    global_efficiency
-
-    References
-    ----------
-    .. [1] Latora, Vito, and Massimo Marchiori.
-           "Efficient behavior of small-world networks."
-           *Physical Review Letters* 87.19 (2001): 198701.
-           <https://doi.org/10.1103/PhysRevLett.87.198701>
-
-    """
-    try:
-        eff = 1 / nx.shortest_path_length(G, u, v)
-    except NetworkXNoPath:
-        eff = 0
-    return eff
-
-
-@not_implemented_for("directed")
-@nx._dispatchable
-def global_efficiency(G):
-    """Returns the average global efficiency of the graph.
-
-    The *efficiency* of a pair of nodes in a graph is the multiplicative
-    inverse of the shortest path distance between the nodes. The *average
-    global efficiency* of a graph is the average efficiency of all pairs of
-    nodes [1]_.
-
-    Parameters
-    ----------
-    G : :class:`networkx.Graph`
-        An undirected graph for which to compute the average global efficiency.
-
-    Returns
-    -------
-    float
-        The average global efficiency of the graph.
-
-    Examples
-    --------
-    >>> G = nx.Graph([(0, 1), (0, 2), (0, 3), (1, 2), (1, 3)])
-    >>> round(nx.global_efficiency(G), 12)
-    0.916666666667
-
-    Notes
-    -----
-    Edge weights are ignored when computing the shortest path distances.
-
-    See also
-    --------
-    local_efficiency
-
-    References
-    ----------
-    .. [1] Latora, Vito, and Massimo Marchiori.
-           "Efficient behavior of small-world networks."
-           *Physical Review Letters* 87.19 (2001): 198701.
-           <https://doi.org/10.1103/PhysRevLett.87.198701>
-
-    """
-    n = len(G)
-    denom = n * (n - 1)
-    if denom != 0:
-        lengths = nx.all_pairs_shortest_path_length(G)
-        g_eff = 0
-        for source, targets in lengths:
-            for target, distance in targets.items():
-                if distance > 0:
-                    g_eff += 1 / distance
-        g_eff /= denom
-        # g_eff = sum(1 / d for s, tgts in lengths
-        #                   for t, d in tgts.items() if d > 0) / denom
-    else:
-        g_eff = 0
-    # TODO This can be made more efficient by computing all pairs shortest
-    # path lengths in parallel.
-    return g_eff
-
-
-@not_implemented_for("directed")
-@nx._dispatchable
-def local_efficiency(G):
-    """Returns the average local efficiency of the graph.
-
-    The *efficiency* of a pair of nodes in a graph is the multiplicative
-    inverse of the shortest path distance between the nodes. The *local
-    efficiency* of a node in the graph is the average global efficiency of the
-    subgraph induced by the neighbors of the node. The *average local
-    efficiency* is the average of the local efficiencies of each node [1]_.
-
-    Parameters
-    ----------
-    G : :class:`networkx.Graph`
-        An undirected graph for which to compute the average local efficiency.
-
-    Returns
-    -------
-    float
-        The average local efficiency of the graph.
-
-    Examples
-    --------
-    >>> G = nx.Graph([(0, 1), (0, 2), (0, 3), (1, 2), (1, 3)])
-    >>> nx.local_efficiency(G)
-    0.9166666666666667
-
-    Notes
-    -----
-    Edge weights are ignored when computing the shortest path distances.
-
-    See also
-    --------
-    global_efficiency
-
-    References
-    ----------
-    .. [1] Latora, Vito, and Massimo Marchiori.
-           "Efficient behavior of small-world networks."
-           *Physical Review Letters* 87.19 (2001): 198701.
-           <https://doi.org/10.1103/PhysRevLett.87.198701>
-
-    """
-    efficiency_list = (global_efficiency(G.subgraph(G[v])) for v in G)
-    return sum(efficiency_list) / len(G)

package/runtime/python/okstra_vendor/networkx/algorithms/euler.py

@@ -1,470 +0,0 @@
-"""
-Eulerian circuits and graphs.
-"""
-
-from itertools import combinations
-
-import networkx as nx
-
-from ..utils import arbitrary_element, not_implemented_for
-
-__all__ = [
-    "is_eulerian",
-    "eulerian_circuit",
-    "eulerize",
-    "is_semieulerian",
-    "has_eulerian_path",
-    "eulerian_path",
-]
-
-
-@nx._dispatchable
-def is_eulerian(G):
-    """Returns True if and only if `G` is Eulerian.
-
-    A graph is *Eulerian* if it has an Eulerian circuit. An *Eulerian
-    circuit* is a closed walk that includes each edge of a graph exactly
-    once.
-
-    Graphs with isolated vertices (i.e. vertices with zero degree) are not
-    considered to have Eulerian circuits. Therefore, if the graph is not
-    connected (or not strongly connected, for directed graphs), this function
-    returns False.
-
-    Parameters
-    ----------
-    G : NetworkX graph
-       A graph, either directed or undirected.
-
-    Examples
-    --------
-    >>> nx.is_eulerian(nx.DiGraph({0: [3], 1: [2], 2: [3], 3: [0, 1]}))
-    True
-    >>> nx.is_eulerian(nx.complete_graph(5))
-    True
-    >>> nx.is_eulerian(nx.petersen_graph())
-    False
-
-    If you prefer to allow graphs with isolated vertices to have Eulerian circuits,
-    you can first remove such vertices and then call `is_eulerian` as below example shows.
-
-    >>> G = nx.Graph([(0, 1), (1, 2), (0, 2)])
-    >>> G.add_node(3)
-    >>> nx.is_eulerian(G)
-    False
-
-    >>> G.remove_nodes_from(list(nx.isolates(G)))
-    >>> nx.is_eulerian(G)
-    True
-
-
-    """
-    if G.is_directed():
-        # Every node must have equal in degree and out degree and the
-        # graph must be strongly connected
-        return all(
-            G.in_degree(n) == G.out_degree(n) for n in G
-        ) and nx.is_strongly_connected(G)
-    # An undirected Eulerian graph has no vertices of odd degree and
-    # must be connected.
-    return all(d % 2 == 0 for v, d in G.degree()) and nx.is_connected(G)
-
-
-@nx._dispatchable
-def is_semieulerian(G):
-    """Return True iff `G` is semi-Eulerian.
-
-    G is semi-Eulerian if it has an Eulerian path but no Eulerian circuit.
-
-    See Also
-    --------
-    has_eulerian_path
-    is_eulerian
-    """
-    return has_eulerian_path(G) and not is_eulerian(G)
-
-
-def _find_path_start(G):
-    """Return a suitable starting vertex for an Eulerian path.
-
-    If no path exists, return None.
-    """
-    if not has_eulerian_path(G):
-        return None
-
-    if is_eulerian(G):
-        return arbitrary_element(G)
-
-    if G.is_directed():
-        v1, v2 = (v for v in G if G.in_degree(v) != G.out_degree(v))
-        # Determines which is the 'start' node (as opposed to the 'end')
-        if G.out_degree(v1) > G.in_degree(v1):
-            return v1
-        else:
-            return v2
-
-    else:
-        # In an undirected graph randomly choose one of the possibilities
-        start = [v for v in G if G.degree(v) % 2 != 0][0]
-        return start
-
-
-def _simplegraph_eulerian_circuit(G, source):
-    if G.is_directed():
-        degree = G.out_degree
-        edges = G.out_edges
-    else:
-        degree = G.degree
-        edges = G.edges
-    vertex_stack = [source]
-    last_vertex = None
-    while vertex_stack:
-        current_vertex = vertex_stack[-1]
-        if degree(current_vertex) == 0:
-            if last_vertex is not None:
-                yield (last_vertex, current_vertex)
-            last_vertex = current_vertex
-            vertex_stack.pop()
-        else:
-            _, next_vertex = arbitrary_element(edges(current_vertex))
-            vertex_stack.append(next_vertex)
-            G.remove_edge(current_vertex, next_vertex)
-
-
-def _multigraph_eulerian_circuit(G, source):
-    if G.is_directed():
-        degree = G.out_degree
-        edges = G.out_edges
-    else:
-        degree = G.degree
-        edges = G.edges
-    vertex_stack = [(source, None)]
-    last_vertex = None
-    last_key = None
-    while vertex_stack:
-        current_vertex, current_key = vertex_stack[-1]
-        if degree(current_vertex) == 0:
-            if last_vertex is not None:
-                yield (last_vertex, current_vertex, last_key)
-            last_vertex, last_key = current_vertex, current_key
-            vertex_stack.pop()
-        else:
-            triple = arbitrary_element(edges(current_vertex, keys=True))
-            _, next_vertex, next_key = triple
-            vertex_stack.append((next_vertex, next_key))
-            G.remove_edge(current_vertex, next_vertex, next_key)
-
-
-@nx._dispatchable
-def eulerian_circuit(G, source=None, keys=False):
-    """Returns an iterator over the edges of an Eulerian circuit in `G`.
-
-    An *Eulerian circuit* is a closed walk that includes each edge of a
-    graph exactly once.
-
-    Parameters
-    ----------
-    G : NetworkX graph
-       A graph, either directed or undirected.
-
-    source : node, optional
-       Starting node for circuit.
-
-    keys : bool
-       If False, edges generated by this function will be of the form
-       ``(u, v)``. Otherwise, edges will be of the form ``(u, v, k)``.
-       This option is ignored unless `G` is a multigraph.
-
-    Returns
-    -------
-    edges : iterator
-       An iterator over edges in the Eulerian circuit.
-
-    Raises
-    ------
-    NetworkXError
-       If the graph is not Eulerian.
-
-    See Also
-    --------
-    is_eulerian
-
-    Notes
-    -----
-    This is a linear time implementation of an algorithm adapted from [1]_.
-
-    For general information about Euler tours, see [2]_.
-
-    References
-    ----------
-    .. [1] J. Edmonds, E. L. Johnson.
-       Matching, Euler tours and the Chinese postman.
-       Mathematical programming, Volume 5, Issue 1 (1973), 111-114.
-    .. [2] https://en.wikipedia.org/wiki/Eulerian_path
-
-    Examples
-    --------
-    To get an Eulerian circuit in an undirected graph::
-
-        >>> G = nx.complete_graph(3)
-        >>> list(nx.eulerian_circuit(G))
-        [(0, 2), (2, 1), (1, 0)]
-        >>> list(nx.eulerian_circuit(G, source=1))
-        [(1, 2), (2, 0), (0, 1)]
-
-    To get the sequence of vertices in an Eulerian circuit::
-
-        >>> [u for u, v in nx.eulerian_circuit(G)]
-        [0, 2, 1]
-
-    """
-    if not is_eulerian(G):
-        raise nx.NetworkXError("G is not Eulerian.")
-    if G.is_directed():
-        G = G.reverse()
-    else:
-        G = G.copy()
-    if source is None:
-        source = arbitrary_element(G)
-    if G.is_multigraph():
-        for u, v, k in _multigraph_eulerian_circuit(G, source):
-            if keys:
-                yield u, v, k
-            else:
-                yield u, v
-    else:
-        yield from _simplegraph_eulerian_circuit(G, source)
-
-
-@nx._dispatchable
-def has_eulerian_path(G, source=None):
-    """Return True iff `G` has an Eulerian path.
-
-    An Eulerian path is a path in a graph which uses each edge of a graph
-    exactly once. If `source` is specified, then this function checks
-    whether an Eulerian path that starts at node `source` exists.
-
-    A directed graph has an Eulerian path iff:
-        - at most one vertex has out_degree - in_degree = 1,
-        - at most one vertex has in_degree - out_degree = 1,
-        - every other vertex has equal in_degree and out_degree,
-        - and all of its vertices belong to a single connected
-          component of the underlying undirected graph.
-
-    If `source` is not None, an Eulerian path starting at `source` exists if no
-    other node has out_degree - in_degree = 1. This is equivalent to either
-    there exists an Eulerian circuit or `source` has out_degree - in_degree = 1
-    and the conditions above hold.
-
-    An undirected graph has an Eulerian path iff:
-        - exactly zero or two vertices have odd degree,
-        - and all of its vertices belong to a single connected component.
-
-    If `source` is not None, an Eulerian path starting at `source` exists if
-    either there exists an Eulerian circuit or `source` has an odd degree and the
-    conditions above hold.
-
-    Graphs with isolated vertices (i.e. vertices with zero degree) are not considered
-    to have an Eulerian path. Therefore, if the graph is not connected (or not strongly
-    connected, for directed graphs), this function returns False.
-
-    Parameters
-    ----------
-    G : NetworkX Graph
-        The graph to find an euler path in.
-
-    source : node, optional
-        Starting node for path.
-
-    Returns
-    -------
-    Bool : True if G has an Eulerian path.
-
-    Examples
-    --------
-    If you prefer to allow graphs with isolated vertices to have Eulerian path,
-    you can first remove such vertices and then call `has_eulerian_path` as below example shows.
-
-    >>> G = nx.Graph([(0, 1), (1, 2), (0, 2)])
-    >>> G.add_node(3)
-    >>> nx.has_eulerian_path(G)
-    False
-
-    >>> G.remove_nodes_from(list(nx.isolates(G)))
-    >>> nx.has_eulerian_path(G)
-    True
-
-    See Also
-    --------
-    is_eulerian
-    eulerian_path
-    """
-    if nx.is_eulerian(G):
-        return True
-
-    if G.is_directed():
-        ins = G.in_degree
-        outs = G.out_degree
-        # Since we know it is not eulerian, outs - ins must be 1 for source
-        if source is not None and outs[source] - ins[source] != 1:
-            return False
-
-        unbalanced_ins = 0
-        unbalanced_outs = 0
-        for v in G:
-            if ins[v] - outs[v] == 1:
-                unbalanced_ins += 1
-            elif outs[v] - ins[v] == 1:
-                unbalanced_outs += 1
-            elif ins[v] != outs[v]:
-                return False
-
-        return (
-            unbalanced_ins <= 1 and unbalanced_outs <= 1 and nx.is_weakly_connected(G)
-        )
-    else:
-        # We know it is not eulerian, so degree of source must be odd.
-        if source is not None and G.degree[source] % 2 != 1:
-            return False
-
-        # Sum is 2 since we know it is not eulerian (which implies sum is 0)
-        return sum(d % 2 == 1 for v, d in G.degree()) == 2 and nx.is_connected(G)
-
-
-@nx._dispatchable
-def eulerian_path(G, source=None, keys=False):
-    """Return an iterator over the edges of an Eulerian path in `G`.
-
-    Parameters
-    ----------
-    G : NetworkX Graph
-        The graph in which to look for an eulerian path.
-    source : node or None (default: None)
-        The node at which to start the search. None means search over all
-        starting nodes.
-    keys : Bool (default: False)
-        Indicates whether to yield edge 3-tuples (u, v, edge_key).
-        The default yields edge 2-tuples
-
-    Yields
-    ------
-    Edge tuples along the eulerian path.
-
-    Warning: If `source` provided is not the start node of an Euler path
-    will raise error even if an Euler Path exists.
-    """
-    if not has_eulerian_path(G, source):
-        raise nx.NetworkXError("Graph has no Eulerian paths.")
-    if G.is_directed():
-        G = G.reverse()
-        if source is None or nx.is_eulerian(G) is False:
-            source = _find_path_start(G)
-        if G.is_multigraph():
-            for u, v, k in _multigraph_eulerian_circuit(G, source):
-                if keys:
-                    yield u, v, k
-                else:
-                    yield u, v
-        else:
-            yield from _simplegraph_eulerian_circuit(G, source)
-    else:
-        G = G.copy()
-        if source is None:
-            source = _find_path_start(G)
-        if G.is_multigraph():
-            if keys:
-                yield from reversed(
-                    [(v, u, k) for u, v, k in _multigraph_eulerian_circuit(G, source)]
-                )
-            else:
-                yield from reversed(
-                    [(v, u) for u, v, k in _multigraph_eulerian_circuit(G, source)]
-                )
-        else:
-            yield from reversed(
-                [(v, u) for u, v in _simplegraph_eulerian_circuit(G, source)]
-            )
-
-
-@not_implemented_for("directed")
-@nx._dispatchable(returns_graph=True)
-def eulerize(G):
-    """Transforms a graph into an Eulerian graph.
-
-    If `G` is Eulerian the result is `G` as a MultiGraph, otherwise the result is a smallest
-    (in terms of the number of edges) multigraph whose underlying simple graph is `G`.
-
-    Parameters
-    ----------
-    G : NetworkX graph
-       An undirected graph
-
-    Returns
-    -------
-    G : NetworkX multigraph
-
-    Raises
-    ------
-    NetworkXError
-       If the graph is not connected.
-
-    See Also
-    --------
-    is_eulerian
-    eulerian_circuit
-
-    References
-    ----------
-    .. [1] J. Edmonds, E. L. Johnson.
-       Matching, Euler tours and the Chinese postman.
-       Mathematical programming, Volume 5, Issue 1 (1973), 111-114.
-    .. [2] https://en.wikipedia.org/wiki/Eulerian_path
-    .. [3] http://web.math.princeton.edu/math_alive/5/Notes1.pdf
-
-    Examples
-    --------
-        >>> G = nx.complete_graph(10)
-        >>> H = nx.eulerize(G)
-        >>> nx.is_eulerian(H)
-        True
-
-    """
-    if G.order() == 0:
-        raise nx.NetworkXPointlessConcept("Cannot Eulerize null graph")
-    if not nx.is_connected(G):
-        raise nx.NetworkXError("G is not connected")
-    odd_degree_nodes = [n for n, d in G.degree() if d % 2 == 1]
-    G = nx.MultiGraph(G)
-    if len(odd_degree_nodes) == 0:
-        return G
-
-    # get all shortest paths between vertices of odd degree
-    odd_deg_pairs_paths = [
-        (m, {n: nx.shortest_path(G, source=m, target=n)})
-        for m, n in combinations(odd_degree_nodes, 2)
-    ]
-
-    # use the number of vertices in a graph + 1 as an upper bound on
-    # the maximum length of a path in G
-    upper_bound_on_max_path_length = len(G) + 1
-
-    # use "len(G) + 1 - len(P)",
-    # where P is a shortest path between vertices n and m,
-    # as edge-weights in a new graph
-    # store the paths in the graph for easy indexing later
-    Gp = nx.Graph()
-    for n, Ps in odd_deg_pairs_paths:
-        for m, P in Ps.items():
-            if n != m:
-                Gp.add_edge(
-                    m, n, weight=upper_bound_on_max_path_length - len(P), path=P
-                )
-
-    # find the minimum weight matching of edges in the weighted graph
-    best_matching = nx.Graph(list(nx.max_weight_matching(Gp)))
-
-    # duplicate each edge along each path in the set of paths in Gp
-    for m, n in best_matching.edges():
-        path = Gp[m][n]["path"]
-        G.add_edges_from(nx.utils.pairwise(path))
-    return G

package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py

@@ -1,11 +0,0 @@
-from .maxflow import *
-from .mincost import *
-from .boykovkolmogorov import *
-from .dinitz_alg import *
-from .edmondskarp import *
-from .gomory_hu import *
-from .preflowpush import *
-from .shortestaugmentingpath import *
-from .capacityscaling import *
-from .networksimplex import *
-from .utils import build_flow_dict, build_residual_network