okstra 0.130.3 → 0.131.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (367) hide show
  1. package/README.md +0 -1
  2. package/docs/architecture.md +2 -2
  3. package/docs/cli.md +1 -1
  4. package/docs/for-ai/README.md +0 -2
  5. package/docs/for-ai/skills/okstra-run.md +13 -2
  6. package/docs/for-ai/skills/okstra-setup.md +4 -1
  7. package/docs/project-structure-overview.md +5 -4
  8. package/docs/task-process/implementation-planning.md +13 -0
  9. package/docs/task-process/implementation.md +17 -2
  10. package/package.json +1 -1
  11. package/runtime/BUILD.json +2 -2
  12. package/runtime/agents/workers/report-writer-worker.md +7 -0
  13. package/runtime/bin/lib/okstra/usage.sh +4 -4
  14. package/runtime/prompts/lead/okstra-lead-contract.md +2 -2
  15. package/runtime/prompts/lead/plan-body-verification.md +26 -5
  16. package/runtime/prompts/lead/report-writer.md +6 -2
  17. package/runtime/prompts/profiles/_common-contract.md +2 -1
  18. package/runtime/prompts/profiles/_implementation-deliverable.md +6 -1
  19. package/runtime/prompts/profiles/_implementation-executor.md +2 -2
  20. package/runtime/prompts/profiles/_implementation-verifier.md +33 -10
  21. package/runtime/prompts/profiles/final-verification.md +21 -6
  22. package/runtime/prompts/profiles/implementation-planning.md +21 -4
  23. package/runtime/python/okstra_ctl/codex_dispatch.py +31 -0
  24. package/runtime/python/okstra_ctl/conformance.py +49 -11
  25. package/runtime/python/okstra_ctl/report_finalize.py +52 -1
  26. package/runtime/python/okstra_ctl/report_views.py +32 -5
  27. package/runtime/python/okstra_ctl/run.py +15 -3
  28. package/runtime/python/okstra_ctl/worker_prompt_contract.py +14 -6
  29. package/runtime/python/okstra_ctl/worker_prompt_policy.py +19 -1
  30. package/runtime/python/okstra_vendor/__init__.py +0 -44
  31. package/runtime/schemas/final-report-v1.0.schema.json +101 -6
  32. package/runtime/skills/okstra-run/SKILL.md +11 -4
  33. package/runtime/skills/okstra-setup/SKILL.md +3 -2
  34. package/runtime/skills/okstra-setup/references/project-config.md +16 -7
  35. package/runtime/templates/reports/final-report.template.md +18 -12
  36. package/runtime/templates/reports/i18n/en.json +1 -0
  37. package/runtime/templates/reports/i18n/ko.json +1 -0
  38. package/runtime/templates/reports/report.css +18 -0
  39. package/runtime/validators/lib/fixtures.sh +6 -0
  40. package/runtime/validators/validate-run.py +1722 -98
  41. package/src/cli-registry.mjs +0 -7
  42. package/src/commands/lifecycle/doctor.mjs +0 -9
  43. package/src/lib/skill-catalog.mjs +0 -1
  44. package/docs/for-ai/skills/okstra-graphify.md +0 -64
  45. package/runtime/python/okstra_ctl/graphify_cmd.py +0 -225
  46. package/runtime/python/okstra_vendor/graphify/.vendored-version +0 -1
  47. package/runtime/python/okstra_vendor/graphify/__init__.py +0 -28
  48. package/runtime/python/okstra_vendor/graphify/__main__.py +0 -1371
  49. package/runtime/python/okstra_vendor/graphify/analyze.py +0 -540
  50. package/runtime/python/okstra_vendor/graphify/benchmark.py +0 -129
  51. package/runtime/python/okstra_vendor/graphify/build.py +0 -107
  52. package/runtime/python/okstra_vendor/graphify/cache.py +0 -169
  53. package/runtime/python/okstra_vendor/graphify/cluster.py +0 -137
  54. package/runtime/python/okstra_vendor/graphify/detect.py +0 -510
  55. package/runtime/python/okstra_vendor/graphify/export.py +0 -1014
  56. package/runtime/python/okstra_vendor/graphify/extract.py +0 -3277
  57. package/runtime/python/okstra_vendor/graphify/hooks.py +0 -220
  58. package/runtime/python/okstra_vendor/graphify/ingest.py +0 -297
  59. package/runtime/python/okstra_vendor/graphify/manifest.py +0 -4
  60. package/runtime/python/okstra_vendor/graphify/report.py +0 -175
  61. package/runtime/python/okstra_vendor/graphify/security.py +0 -203
  62. package/runtime/python/okstra_vendor/graphify/serve.py +0 -373
  63. package/runtime/python/okstra_vendor/graphify/skill-aider.md +0 -1184
  64. package/runtime/python/okstra_vendor/graphify/skill-claw.md +0 -1184
  65. package/runtime/python/okstra_vendor/graphify/skill-codex.md +0 -1242
  66. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +0 -1268
  67. package/runtime/python/okstra_vendor/graphify/skill-droid.md +0 -1239
  68. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +0 -1183
  69. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +0 -1238
  70. package/runtime/python/okstra_vendor/graphify/skill-trae.md +0 -1208
  71. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +0 -253
  72. package/runtime/python/okstra_vendor/graphify/skill-windows.md +0 -1245
  73. package/runtime/python/okstra_vendor/graphify/skill.md +0 -1319
  74. package/runtime/python/okstra_vendor/graphify/transcribe.py +0 -182
  75. package/runtime/python/okstra_vendor/graphify/validate.py +0 -72
  76. package/runtime/python/okstra_vendor/graphify/watch.py +0 -188
  77. package/runtime/python/okstra_vendor/graphify/wiki.py +0 -214
  78. package/runtime/python/okstra_vendor/networkx/__init__.py +0 -62
  79. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +0 -134
  80. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +0 -26
  81. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +0 -259
  82. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +0 -71
  83. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +0 -412
  84. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +0 -396
  85. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +0 -150
  86. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +0 -149
  87. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +0 -369
  88. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +0 -44
  89. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +0 -143
  90. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +0 -53
  91. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +0 -265
  92. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +0 -1508
  93. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +0 -255
  94. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +0 -83
  95. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +0 -5
  96. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +0 -122
  97. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +0 -302
  98. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +0 -255
  99. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +0 -160
  100. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +0 -127
  101. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +0 -164
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +0 -88
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +0 -322
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +0 -290
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +0 -289
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +0 -57
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +0 -360
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +0 -105
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +0 -603
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +0 -316
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +0 -590
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +0 -232
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +0 -526
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +0 -112
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +0 -69
  116. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +0 -168
  117. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +0 -205
  118. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +0 -164
  119. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +0 -20
  120. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +0 -591
  121. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +0 -236
  122. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +0 -282
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +0 -364
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +0 -227
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +0 -96
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +0 -150
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +0 -107
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +0 -357
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +0 -130
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +0 -787
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +0 -88
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +0 -331
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +0 -150
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +0 -200
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +0 -128
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +0 -209
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +0 -141
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +0 -361
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +0 -181
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +0 -95
  141. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +0 -172
  142. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +0 -443
  143. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +0 -818
  144. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +0 -732
  145. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +0 -4
  146. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +0 -505
  147. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +0 -565
  148. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +0 -163
  149. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +0 -28
  150. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +0 -153
  151. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +0 -354
  152. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +0 -171
  153. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +0 -30
  154. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +0 -216
  155. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +0 -79
  156. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +0 -338
  157. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +0 -162
  158. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +0 -220
  159. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +0 -384
  160. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +0 -227
  161. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +0 -452
  162. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +0 -347
  163. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +0 -6
  164. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +0 -115
  165. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +0 -394
  166. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +0 -282
  167. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +0 -71
  168. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +0 -359
  169. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +0 -196
  170. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +0 -11
  171. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +0 -811
  172. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +0 -616
  173. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +0 -408
  174. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +0 -1270
  175. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +0 -592
  176. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +0 -220
  177. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +0 -235
  178. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +0 -152
  179. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +0 -88
  180. package/runtime/python/okstra_vendor/networkx/algorithms/core.py +0 -588
  181. package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +0 -142
  182. package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +0 -416
  183. package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +0 -1234
  184. package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +0 -677
  185. package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +0 -1392
  186. package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +0 -1095
  187. package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +0 -272
  188. package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +0 -142
  189. package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +0 -268
  190. package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +0 -167
  191. package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +0 -470
  192. package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +0 -11
  193. package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +0 -370
  194. package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +0 -407
  195. package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +0 -238
  196. package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +0 -241
  197. package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +0 -178
  198. package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +0 -611
  199. package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +0 -356
  200. package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +0 -662
  201. package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +0 -425
  202. package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +0 -300
  203. package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +0 -194
  204. package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +0 -435
  205. package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +0 -483
  206. package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +0 -57
  207. package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +0 -196
  208. package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +0 -107
  209. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +0 -7
  210. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +0 -1306
  211. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +0 -336
  212. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +0 -1262
  213. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +0 -352
  214. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +0 -308
  215. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +0 -264
  216. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +0 -1102
  217. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +0 -192
  218. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +0 -2
  219. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +0 -337
  220. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +0 -498
  221. package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +0 -687
  222. package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +0 -280
  223. package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +0 -1148
  224. package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +0 -27
  225. package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +0 -738
  226. package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +0 -78
  227. package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +0 -59
  228. package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +0 -219
  229. package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +0 -155
  230. package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +0 -4
  231. package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +0 -324
  232. package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +0 -468
  233. package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +0 -633
  234. package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +0 -77
  235. package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +0 -73
  236. package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +0 -464
  237. package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +0 -1463
  238. package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +0 -306
  239. package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +0 -98
  240. package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +0 -167
  241. package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +0 -138
  242. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +0 -5
  243. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +0 -239
  244. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +0 -264
  245. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +0 -716
  246. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +0 -625
  247. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +0 -2542
  248. package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +0 -2107
  249. package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +0 -966
  250. package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +0 -404
  251. package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +0 -30
  252. package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +0 -296
  253. package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +0 -374
  254. package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +0 -564
  255. package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +0 -406
  256. package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +0 -981
  257. package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +0 -142
  258. package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +0 -406
  259. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +0 -5
  260. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +0 -90
  261. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +0 -576
  262. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +0 -529
  263. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +0 -185
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@@ -1,787 +0,0 @@
1
- """Group centrality measures."""
2
-
3
- from copy import deepcopy
4
-
5
- import networkx as nx
6
- from networkx.algorithms.centrality.betweenness import (
7
- _accumulate_endpoints,
8
- _single_source_dijkstra_path_basic,
9
- _single_source_shortest_path_basic,
10
- )
11
- from networkx.utils.decorators import not_implemented_for
12
-
13
- __all__ = [
14
- "group_betweenness_centrality",
15
- "group_closeness_centrality",
16
- "group_degree_centrality",
17
- "group_in_degree_centrality",
18
- "group_out_degree_centrality",
19
- "prominent_group",
20
- ]
21
-
22
-
23
- @nx._dispatchable(edge_attrs="weight")
24
- def group_betweenness_centrality(G, C, normalized=True, weight=None, endpoints=False):
25
- r"""Compute the group betweenness centrality for a group of nodes.
26
-
27
- Group betweenness centrality of a group of nodes $C$ is the sum of the
28
- fraction of all-pairs shortest paths that pass through any vertex in $C$
29
-
30
- .. math::
31
-
32
- c_B(v) =\sum_{s,t \in V} \frac{\sigma(s, t|v)}{\sigma(s, t)}
33
-
34
- where $V$ is the set of nodes, $\sigma(s, t)$ is the number of
35
- shortest $(s, t)$-paths, and $\sigma(s, t|C)$ is the number of
36
- those paths passing through some node in group $C$. Note that
37
- $(s, t)$ are not members of the group ($V-C$ is the set of nodes
38
- in $V$ that are not in $C$).
39
-
40
- Parameters
41
- ----------
42
- G : graph
43
- A NetworkX graph.
44
-
45
- C : list or set or list of lists or list of sets
46
- A group or a list of groups containing nodes which belong to G, for which group betweenness
47
- centrality is to be calculated.
48
-
49
- normalized : bool, optional (default=True)
50
- If True, group betweenness is normalized by `1/((|V|-|C|)(|V|-|C|-1))`
51
- where `|V|` is the number of nodes in G and `|C|` is the number of nodes in C.
52
-
53
- weight : None or string, optional (default=None)
54
- If None, all edge weights are considered equal.
55
- Otherwise holds the name of the edge attribute used as weight.
56
- The weight of an edge is treated as the length or distance between the two sides.
57
-
58
- endpoints : bool, optional (default=False)
59
- If True include the endpoints in the shortest path counts.
60
-
61
- Raises
62
- ------
63
- NodeNotFound
64
- If node(s) in C are not present in G.
65
-
66
- Returns
67
- -------
68
- betweenness : list of floats or float
69
- If C is a single group then return a float. If C is a list with
70
- several groups then return a list of group betweenness centralities.
71
-
72
- See Also
73
- --------
74
- betweenness_centrality
75
-
76
- Notes
77
- -----
78
- Group betweenness centrality is described in [1]_ and its importance discussed in [3]_.
79
- The initial implementation of the algorithm is mentioned in [2]_. This function uses
80
- an improved algorithm presented in [4]_.
81
-
82
- The number of nodes in the group must be a maximum of n - 2 where `n`
83
- is the total number of nodes in the graph.
84
-
85
- For weighted graphs the edge weights must be greater than zero.
86
- Zero edge weights can produce an infinite number of equal length
87
- paths between pairs of nodes.
88
-
89
- The total number of paths between source and target is counted
90
- differently for directed and undirected graphs. Directed paths
91
- between "u" and "v" are counted as two possible paths (one each
92
- direction) while undirected paths between "u" and "v" are counted
93
- as one path. Said another way, the sum in the expression above is
94
- over all ``s != t`` for directed graphs and for ``s < t`` for undirected graphs.
95
-
96
-
97
- References
98
- ----------
99
- .. [1] M G Everett and S P Borgatti:
100
- The Centrality of Groups and Classes.
101
- Journal of Mathematical Sociology. 23(3): 181-201. 1999.
102
- http://www.analytictech.com/borgatti/group_centrality.htm
103
- .. [2] Ulrik Brandes:
104
- On Variants of Shortest-Path Betweenness
105
- Centrality and their Generic Computation.
106
- Social Networks 30(2):136-145, 2008.
107
- http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.72.9610&rep=rep1&type=pdf
108
- .. [3] Sourav Medya et. al.:
109
- Group Centrality Maximization via Network Design.
110
- SIAM International Conference on Data Mining, SDM 2018, 126–134.
111
- https://sites.cs.ucsb.edu/~arlei/pubs/sdm18.pdf
112
- .. [4] Rami Puzis, Yuval Elovici, and Shlomi Dolev.
113
- "Fast algorithm for successive computation of group betweenness centrality."
114
- https://journals.aps.org/pre/pdf/10.1103/PhysRevE.76.056709
115
-
116
- """
117
- GBC = [] # initialize betweenness
118
- list_of_groups = True
119
- # check weather C contains one or many groups
120
- if any(el in G for el in C):
121
- C = [C]
122
- list_of_groups = False
123
- set_v = {node for group in C for node in group}
124
- if set_v - G.nodes: # element(s) of C not in G
125
- raise nx.NodeNotFound(f"The node(s) {set_v - G.nodes} are in C but not in G.")
126
-
127
- # pre-processing
128
- PB, sigma, D = _group_preprocessing(G, set_v, weight)
129
-
130
- # the algorithm for each group
131
- for group in C:
132
- group = set(group) # set of nodes in group
133
- # initialize the matrices of the sigma and the PB
134
- GBC_group = 0
135
- sigma_m = deepcopy(sigma)
136
- PB_m = deepcopy(PB)
137
- sigma_m_v = deepcopy(sigma_m)
138
- PB_m_v = deepcopy(PB_m)
139
- for v in group:
140
- GBC_group += PB_m[v][v]
141
- for x in group:
142
- for y in group:
143
- dxvy = 0
144
- dxyv = 0
145
- dvxy = 0
146
- if not (
147
- sigma_m[x][y] == 0 or sigma_m[x][v] == 0 or sigma_m[v][y] == 0
148
- ):
149
- if D[x][v] == D[x][y] + D[y][v]:
150
- dxyv = sigma_m[x][y] * sigma_m[y][v] / sigma_m[x][v]
151
- if D[x][y] == D[x][v] + D[v][y]:
152
- dxvy = sigma_m[x][v] * sigma_m[v][y] / sigma_m[x][y]
153
- if D[v][y] == D[v][x] + D[x][y]:
154
- dvxy = sigma_m[v][x] * sigma[x][y] / sigma[v][y]
155
- sigma_m_v[x][y] = sigma_m[x][y] * (1 - dxvy)
156
- PB_m_v[x][y] = PB_m[x][y] - PB_m[x][y] * dxvy
157
- if y != v:
158
- PB_m_v[x][y] -= PB_m[x][v] * dxyv
159
- if x != v:
160
- PB_m_v[x][y] -= PB_m[v][y] * dvxy
161
- sigma_m, sigma_m_v = sigma_m_v, sigma_m
162
- PB_m, PB_m_v = PB_m_v, PB_m
163
-
164
- # endpoints
165
- v, c = len(G), len(group)
166
- if not endpoints:
167
- scale = 0
168
- # if the graph is connected then subtract the endpoints from
169
- # the count for all the nodes in the graph. else count how many
170
- # nodes are connected to the group's nodes and subtract that.
171
- if nx.is_directed(G):
172
- if nx.is_strongly_connected(G):
173
- scale = c * (2 * v - c - 1)
174
- elif nx.is_connected(G):
175
- scale = c * (2 * v - c - 1)
176
- if scale == 0:
177
- for group_node1 in group:
178
- for node in D[group_node1]:
179
- if node != group_node1:
180
- if node in group:
181
- scale += 1
182
- else:
183
- scale += 2
184
- GBC_group -= scale
185
-
186
- # normalized
187
- if normalized:
188
- scale = 1 / ((v - c) * (v - c - 1))
189
- GBC_group *= scale
190
-
191
- # If undirected than count only the undirected edges
192
- elif not G.is_directed():
193
- GBC_group /= 2
194
-
195
- GBC.append(GBC_group)
196
- if list_of_groups:
197
- return GBC
198
- return GBC[0]
199
-
200
-
201
- def _group_preprocessing(G, set_v, weight):
202
- sigma = {}
203
- delta = {}
204
- D = {}
205
- betweenness = dict.fromkeys(G, 0)
206
- for s in G:
207
- if weight is None: # use BFS
208
- S, P, sigma[s], D[s] = _single_source_shortest_path_basic(G, s)
209
- else: # use Dijkstra's algorithm
210
- S, P, sigma[s], D[s] = _single_source_dijkstra_path_basic(G, s, weight)
211
- betweenness, delta[s] = _accumulate_endpoints(betweenness, S, P, sigma[s], s)
212
- for i in delta[s]: # add the paths from s to i and rescale sigma
213
- if s != i:
214
- delta[s][i] += 1
215
- if weight is not None:
216
- sigma[s][i] = sigma[s][i] / 2
217
- # building the path betweenness matrix only for nodes that appear in the group
218
- PB = dict.fromkeys(G)
219
- for group_node1 in set_v:
220
- PB[group_node1] = dict.fromkeys(G, 0.0)
221
- for group_node2 in set_v:
222
- if group_node2 not in D[group_node1]:
223
- continue
224
- for node in G:
225
- # if node is connected to the two group nodes than continue
226
- if group_node2 in D[node] and group_node1 in D[node]:
227
- if (
228
- D[node][group_node2]
229
- == D[node][group_node1] + D[group_node1][group_node2]
230
- ):
231
- PB[group_node1][group_node2] += (
232
- delta[node][group_node2]
233
- * sigma[node][group_node1]
234
- * sigma[group_node1][group_node2]
235
- / sigma[node][group_node2]
236
- )
237
- return PB, sigma, D
238
-
239
-
240
- @nx._dispatchable(edge_attrs="weight")
241
- def prominent_group(
242
- G, k, weight=None, C=None, endpoints=False, normalized=True, greedy=False
243
- ):
244
- r"""Find the prominent group of size $k$ in graph $G$. The prominence of the
245
- group is evaluated by the group betweenness centrality.
246
-
247
- Group betweenness centrality of a group of nodes $C$ is the sum of the
248
- fraction of all-pairs shortest paths that pass through any vertex in $C$
249
-
250
- .. math::
251
-
252
- c_B(v) =\sum_{s,t \in V} \frac{\sigma(s, t|v)}{\sigma(s, t)}
253
-
254
- where $V$ is the set of nodes, $\sigma(s, t)$ is the number of
255
- shortest $(s, t)$-paths, and $\sigma(s, t|C)$ is the number of
256
- those paths passing through some node in group $C$. Note that
257
- $(s, t)$ are not members of the group ($V-C$ is the set of nodes
258
- in $V$ that are not in $C$).
259
-
260
- Parameters
261
- ----------
262
- G : graph
263
- A NetworkX graph.
264
-
265
- k : int
266
- The number of nodes in the group.
267
-
268
- normalized : bool, optional (default=True)
269
- If True, group betweenness is normalized by ``1/((|V|-|C|)(|V|-|C|-1))``
270
- where ``|V|`` is the number of nodes in G and ``|C|`` is the number of
271
- nodes in C.
272
-
273
- weight : None or string, optional (default=None)
274
- If None, all edge weights are considered equal.
275
- Otherwise holds the name of the edge attribute used as weight.
276
- The weight of an edge is treated as the length or distance between the two sides.
277
-
278
- endpoints : bool, optional (default=False)
279
- If True include the endpoints in the shortest path counts.
280
-
281
- C : list or set, optional (default=None)
282
- list of nodes which won't be candidates of the prominent group.
283
-
284
- greedy : bool, optional (default=False)
285
- Using a naive greedy algorithm in order to find non-optimal prominent
286
- group. For scale free networks the results are negligibly below the optimal
287
- results.
288
-
289
- Raises
290
- ------
291
- NodeNotFound
292
- If node(s) in C are not present in G.
293
-
294
- Returns
295
- -------
296
- max_GBC : float
297
- The group betweenness centrality of the prominent group.
298
-
299
- max_group : list
300
- The list of nodes in the prominent group.
301
-
302
- See Also
303
- --------
304
- betweenness_centrality, group_betweenness_centrality
305
-
306
- Notes
307
- -----
308
- Group betweenness centrality is described in [1]_ and its importance discussed in [3]_.
309
- The algorithm is described in [2]_ and is based on techniques mentioned in [4]_.
310
-
311
- The number of nodes in the group must be a maximum of ``n - 2`` where ``n``
312
- is the total number of nodes in the graph.
313
-
314
- For weighted graphs the edge weights must be greater than zero.
315
- Zero edge weights can produce an infinite number of equal length
316
- paths between pairs of nodes.
317
-
318
- The total number of paths between source and target is counted
319
- differently for directed and undirected graphs. Directed paths
320
- between "u" and "v" are counted as two possible paths (one each
321
- direction) while undirected paths between "u" and "v" are counted
322
- as one path. Said another way, the sum in the expression above is
323
- over all ``s != t`` for directed graphs and for ``s < t`` for undirected graphs.
324
-
325
- References
326
- ----------
327
- .. [1] M G Everett and S P Borgatti:
328
- The Centrality of Groups and Classes.
329
- Journal of Mathematical Sociology. 23(3): 181-201. 1999.
330
- http://www.analytictech.com/borgatti/group_centrality.htm
331
- .. [2] Rami Puzis, Yuval Elovici, and Shlomi Dolev:
332
- "Finding the Most Prominent Group in Complex Networks"
333
- AI communications 20(4): 287-296, 2007.
334
- https://www.researchgate.net/profile/Rami_Puzis2/publication/220308855
335
- .. [3] Sourav Medya et. al.:
336
- Group Centrality Maximization via Network Design.
337
- SIAM International Conference on Data Mining, SDM 2018, 126–134.
338
- https://sites.cs.ucsb.edu/~arlei/pubs/sdm18.pdf
339
- .. [4] Rami Puzis, Yuval Elovici, and Shlomi Dolev.
340
- "Fast algorithm for successive computation of group betweenness centrality."
341
- https://journals.aps.org/pre/pdf/10.1103/PhysRevE.76.056709
342
- """
343
- import numpy as np
344
- import pandas as pd
345
-
346
- if C is not None:
347
- C = set(C)
348
- if C - G.nodes: # element(s) of C not in G
349
- raise nx.NodeNotFound(f"The node(s) {C - G.nodes} are in C but not in G.")
350
- nodes = list(G.nodes - C)
351
- else:
352
- nodes = list(G.nodes)
353
- DF_tree = nx.Graph()
354
- DF_tree.__networkx_cache__ = None # Disable caching
355
- PB, sigma, D = _group_preprocessing(G, nodes, weight)
356
- betweenness = pd.DataFrame.from_dict(PB)
357
- if C is not None:
358
- for node in C:
359
- # remove from the betweenness all the nodes not part of the group
360
- betweenness = betweenness.drop(index=node)
361
- betweenness = betweenness.drop(columns=node)
362
- CL = [node for _, node in sorted(zip(np.diag(betweenness), nodes), reverse=True)]
363
- max_GBC = 0
364
- max_group = []
365
- DF_tree.add_node(
366
- 1,
367
- CL=CL,
368
- betweenness=betweenness,
369
- GBC=0,
370
- GM=[],
371
- sigma=sigma,
372
- cont=dict(zip(nodes, np.diag(betweenness))),
373
- )
374
-
375
- # the algorithm
376
- DF_tree.nodes[1]["heu"] = 0
377
- for i in range(k):
378
- DF_tree.nodes[1]["heu"] += DF_tree.nodes[1]["cont"][DF_tree.nodes[1]["CL"][i]]
379
- max_GBC, DF_tree, max_group = _dfbnb(
380
- G, k, DF_tree, max_GBC, 1, D, max_group, nodes, greedy
381
- )
382
-
383
- v = len(G)
384
- if not endpoints:
385
- scale = 0
386
- # if the graph is connected then subtract the endpoints from
387
- # the count for all the nodes in the graph. else count how many
388
- # nodes are connected to the group's nodes and subtract that.
389
- if nx.is_directed(G):
390
- if nx.is_strongly_connected(G):
391
- scale = k * (2 * v - k - 1)
392
- elif nx.is_connected(G):
393
- scale = k * (2 * v - k - 1)
394
- if scale == 0:
395
- for group_node1 in max_group:
396
- for node in D[group_node1]:
397
- if node != group_node1:
398
- if node in max_group:
399
- scale += 1
400
- else:
401
- scale += 2
402
- max_GBC -= scale
403
-
404
- # normalized
405
- if normalized:
406
- scale = 1 / ((v - k) * (v - k - 1))
407
- max_GBC *= scale
408
-
409
- # If undirected then count only the undirected edges
410
- elif not G.is_directed():
411
- max_GBC /= 2
412
- max_GBC = float(f"{max_GBC:.2f}")
413
- return max_GBC, max_group
414
-
415
-
416
- def _dfbnb(G, k, DF_tree, max_GBC, root, D, max_group, nodes, greedy):
417
- # stopping condition - if we found a group of size k and with higher GBC then prune
418
- if len(DF_tree.nodes[root]["GM"]) == k and DF_tree.nodes[root]["GBC"] > max_GBC:
419
- return DF_tree.nodes[root]["GBC"], DF_tree, DF_tree.nodes[root]["GM"]
420
- # stopping condition - if the size of group members equal to k or there are less than
421
- # k - |GM| in the candidate list or the heuristic function plus the GBC is below the
422
- # maximal GBC found then prune
423
- if (
424
- len(DF_tree.nodes[root]["GM"]) == k
425
- or len(DF_tree.nodes[root]["CL"]) <= k - len(DF_tree.nodes[root]["GM"])
426
- or DF_tree.nodes[root]["GBC"] + DF_tree.nodes[root]["heu"] <= max_GBC
427
- ):
428
- return max_GBC, DF_tree, max_group
429
-
430
- # finding the heuristic of both children
431
- node_p, node_m, DF_tree = _heuristic(k, root, DF_tree, D, nodes, greedy)
432
-
433
- # finding the child with the bigger heuristic + GBC and expand
434
- # that node first if greedy then only expand the plus node
435
- if greedy:
436
- max_GBC, DF_tree, max_group = _dfbnb(
437
- G, k, DF_tree, max_GBC, node_p, D, max_group, nodes, greedy
438
- )
439
-
440
- elif (
441
- DF_tree.nodes[node_p]["GBC"] + DF_tree.nodes[node_p]["heu"]
442
- > DF_tree.nodes[node_m]["GBC"] + DF_tree.nodes[node_m]["heu"]
443
- ):
444
- max_GBC, DF_tree, max_group = _dfbnb(
445
- G, k, DF_tree, max_GBC, node_p, D, max_group, nodes, greedy
446
- )
447
- max_GBC, DF_tree, max_group = _dfbnb(
448
- G, k, DF_tree, max_GBC, node_m, D, max_group, nodes, greedy
449
- )
450
- else:
451
- max_GBC, DF_tree, max_group = _dfbnb(
452
- G, k, DF_tree, max_GBC, node_m, D, max_group, nodes, greedy
453
- )
454
- max_GBC, DF_tree, max_group = _dfbnb(
455
- G, k, DF_tree, max_GBC, node_p, D, max_group, nodes, greedy
456
- )
457
- return max_GBC, DF_tree, max_group
458
-
459
-
460
- def _heuristic(k, root, DF_tree, D, nodes, greedy):
461
- import numpy as np
462
-
463
- # This helper function add two nodes to DF_tree - one left son and the
464
- # other right son, finds their heuristic, CL, GBC, and GM
465
- node_p = DF_tree.number_of_nodes() + 1
466
- node_m = DF_tree.number_of_nodes() + 2
467
- added_node = DF_tree.nodes[root]["CL"][0]
468
-
469
- # adding the plus node
470
- DF_tree.add_nodes_from([(node_p, deepcopy(DF_tree.nodes[root]))])
471
- DF_tree.nodes[node_p]["GM"].append(added_node)
472
- DF_tree.nodes[node_p]["GBC"] += DF_tree.nodes[node_p]["cont"][added_node]
473
- root_node = DF_tree.nodes[root]
474
- for x in nodes:
475
- for y in nodes:
476
- dxvy = 0
477
- dxyv = 0
478
- dvxy = 0
479
- if not (
480
- root_node["sigma"][x][y] == 0
481
- or root_node["sigma"][x][added_node] == 0
482
- or root_node["sigma"][added_node][y] == 0
483
- ):
484
- if D[x][added_node] == D[x][y] + D[y][added_node]:
485
- dxyv = (
486
- root_node["sigma"][x][y]
487
- * root_node["sigma"][y][added_node]
488
- / root_node["sigma"][x][added_node]
489
- )
490
- if D[x][y] == D[x][added_node] + D[added_node][y]:
491
- dxvy = (
492
- root_node["sigma"][x][added_node]
493
- * root_node["sigma"][added_node][y]
494
- / root_node["sigma"][x][y]
495
- )
496
- if D[added_node][y] == D[added_node][x] + D[x][y]:
497
- dvxy = (
498
- root_node["sigma"][added_node][x]
499
- * root_node["sigma"][x][y]
500
- / root_node["sigma"][added_node][y]
501
- )
502
- DF_tree.nodes[node_p]["sigma"][x][y] = root_node["sigma"][x][y] * (1 - dxvy)
503
- DF_tree.nodes[node_p]["betweenness"].loc[y, x] = (
504
- root_node["betweenness"][x][y] - root_node["betweenness"][x][y] * dxvy
505
- )
506
- if y != added_node:
507
- DF_tree.nodes[node_p]["betweenness"].loc[y, x] -= (
508
- root_node["betweenness"][x][added_node] * dxyv
509
- )
510
- if x != added_node:
511
- DF_tree.nodes[node_p]["betweenness"].loc[y, x] -= (
512
- root_node["betweenness"][added_node][y] * dvxy
513
- )
514
-
515
- DF_tree.nodes[node_p]["CL"] = [
516
- node
517
- for _, node in sorted(
518
- zip(np.diag(DF_tree.nodes[node_p]["betweenness"]), nodes), reverse=True
519
- )
520
- if node not in DF_tree.nodes[node_p]["GM"]
521
- ]
522
- DF_tree.nodes[node_p]["cont"] = dict(
523
- zip(nodes, np.diag(DF_tree.nodes[node_p]["betweenness"]))
524
- )
525
- DF_tree.nodes[node_p]["heu"] = 0
526
- for i in range(k - len(DF_tree.nodes[node_p]["GM"])):
527
- DF_tree.nodes[node_p]["heu"] += DF_tree.nodes[node_p]["cont"][
528
- DF_tree.nodes[node_p]["CL"][i]
529
- ]
530
-
531
- # adding the minus node - don't insert the first node in the CL to GM
532
- # Insert minus node only if isn't greedy type algorithm
533
- if not greedy:
534
- DF_tree.add_nodes_from([(node_m, deepcopy(DF_tree.nodes[root]))])
535
- DF_tree.nodes[node_m]["CL"].pop(0)
536
- DF_tree.nodes[node_m]["cont"].pop(added_node)
537
- DF_tree.nodes[node_m]["heu"] = 0
538
- for i in range(k - len(DF_tree.nodes[node_m]["GM"])):
539
- DF_tree.nodes[node_m]["heu"] += DF_tree.nodes[node_m]["cont"][
540
- DF_tree.nodes[node_m]["CL"][i]
541
- ]
542
- else:
543
- node_m = None
544
-
545
- return node_p, node_m, DF_tree
546
-
547
-
548
- @nx._dispatchable(edge_attrs="weight")
549
- def group_closeness_centrality(G, S, weight=None):
550
- r"""Compute the group closeness centrality for a group of nodes.
551
-
552
- Group closeness centrality of a group of nodes $S$ is a measure
553
- of how close the group is to the other nodes in the graph.
554
-
555
- .. math::
556
-
557
- c_{close}(S) = \frac{|V-S|}{\sum_{v \in V-S} d_{S, v}}
558
-
559
- d_{S, v} = min_{u \in S} (d_{u, v})
560
-
561
- where $V$ is the set of nodes, $d_{S, v}$ is the distance of
562
- the group $S$ from $v$ defined as above. ($V-S$ is the set of nodes
563
- in $V$ that are not in $S$).
564
-
565
- Parameters
566
- ----------
567
- G : graph
568
- A NetworkX graph.
569
-
570
- S : list or set
571
- S is a group of nodes which belong to G, for which group closeness
572
- centrality is to be calculated.
573
-
574
- weight : None or string, optional (default=None)
575
- If None, all edge weights are considered equal.
576
- Otherwise holds the name of the edge attribute used as weight.
577
- The weight of an edge is treated as the length or distance between the two sides.
578
-
579
- Raises
580
- ------
581
- NodeNotFound
582
- If node(s) in S are not present in G.
583
-
584
- Returns
585
- -------
586
- closeness : float
587
- Group closeness centrality of the group S.
588
-
589
- See Also
590
- --------
591
- closeness_centrality
592
-
593
- Notes
594
- -----
595
- The measure was introduced in [1]_.
596
- The formula implemented here is described in [2]_.
597
-
598
- Higher values of closeness indicate greater centrality.
599
-
600
- It is assumed that 1 / 0 is 0 (required in the case of directed graphs,
601
- or when a shortest path length is 0).
602
-
603
- The number of nodes in the group must be a maximum of n - 1 where `n`
604
- is the total number of nodes in the graph.
605
-
606
- For directed graphs, the incoming distance is utilized here. To use the
607
- outward distance, act on `G.reverse()`.
608
-
609
- For weighted graphs the edge weights must be greater than zero.
610
- Zero edge weights can produce an infinite number of equal length
611
- paths between pairs of nodes.
612
-
613
- References
614
- ----------
615
- .. [1] M G Everett and S P Borgatti:
616
- The Centrality of Groups and Classes.
617
- Journal of Mathematical Sociology. 23(3): 181-201. 1999.
618
- http://www.analytictech.com/borgatti/group_centrality.htm
619
- .. [2] J. Zhao et. al.:
620
- Measuring and Maximizing Group Closeness Centrality over
621
- Disk Resident Graphs.
622
- WWWConference Proceedings, 2014. 689-694.
623
- https://doi.org/10.1145/2567948.2579356
624
- """
625
- if G.is_directed():
626
- G = G.reverse() # reverse view
627
- closeness = 0 # initialize to 0
628
- V = set(G) # set of nodes in G
629
- S = set(S) # set of nodes in group S
630
- V_S = V - S # set of nodes in V but not S
631
- shortest_path_lengths = nx.multi_source_dijkstra_path_length(G, S, weight=weight)
632
- # accumulation
633
- for v in V_S:
634
- try:
635
- closeness += shortest_path_lengths[v]
636
- except KeyError: # no path exists
637
- closeness += 0
638
- try:
639
- closeness = len(V_S) / closeness
640
- except ZeroDivisionError: # 1 / 0 assumed as 0
641
- closeness = 0
642
- return closeness
643
-
644
-
645
- @nx._dispatchable
646
- def group_degree_centrality(G, S):
647
- """Compute the group degree centrality for a group of nodes.
648
-
649
- Group degree centrality of a group of nodes $S$ is the fraction
650
- of non-group members connected to group members.
651
-
652
- Parameters
653
- ----------
654
- G : graph
655
- A NetworkX graph.
656
-
657
- S : list or set
658
- S is a group of nodes which belong to G, for which group degree
659
- centrality is to be calculated.
660
-
661
- Raises
662
- ------
663
- NetworkXError
664
- If node(s) in S are not in G.
665
-
666
- Returns
667
- -------
668
- centrality : float
669
- Group degree centrality of the group S.
670
-
671
- See Also
672
- --------
673
- degree_centrality
674
- group_in_degree_centrality
675
- group_out_degree_centrality
676
-
677
- Notes
678
- -----
679
- The measure was introduced in [1]_.
680
-
681
- The number of nodes in the group must be a maximum of n - 1 where `n`
682
- is the total number of nodes in the graph.
683
-
684
- References
685
- ----------
686
- .. [1] M G Everett and S P Borgatti:
687
- The Centrality of Groups and Classes.
688
- Journal of Mathematical Sociology. 23(3): 181-201. 1999.
689
- http://www.analytictech.com/borgatti/group_centrality.htm
690
- """
691
- centrality = len(set().union(*[set(G.neighbors(i)) for i in S]) - set(S))
692
- centrality /= len(G.nodes()) - len(S)
693
- return centrality
694
-
695
-
696
- @not_implemented_for("undirected")
697
- @nx._dispatchable
698
- def group_in_degree_centrality(G, S):
699
- """Compute the group in-degree centrality for a group of nodes.
700
-
701
- Group in-degree centrality of a group of nodes $S$ is the fraction
702
- of non-group members connected to group members by incoming edges.
703
-
704
- Parameters
705
- ----------
706
- G : graph
707
- A NetworkX graph.
708
-
709
- S : list or set
710
- S is a group of nodes which belong to G, for which group in-degree
711
- centrality is to be calculated.
712
-
713
- Returns
714
- -------
715
- centrality : float
716
- Group in-degree centrality of the group S.
717
-
718
- Raises
719
- ------
720
- NetworkXNotImplemented
721
- If G is undirected.
722
-
723
- NodeNotFound
724
- If node(s) in S are not in G.
725
-
726
- See Also
727
- --------
728
- degree_centrality
729
- group_degree_centrality
730
- group_out_degree_centrality
731
-
732
- Notes
733
- -----
734
- The number of nodes in the group must be a maximum of n - 1 where `n`
735
- is the total number of nodes in the graph.
736
-
737
- `G.neighbors(i)` gives nodes with an outward edge from i, in a DiGraph,
738
- so for group in-degree centrality, the reverse graph is used.
739
- """
740
- return group_degree_centrality(G.reverse(), S)
741
-
742
-
743
- @not_implemented_for("undirected")
744
- @nx._dispatchable
745
- def group_out_degree_centrality(G, S):
746
- """Compute the group out-degree centrality for a group of nodes.
747
-
748
- Group out-degree centrality of a group of nodes $S$ is the fraction
749
- of non-group members connected to group members by outgoing edges.
750
-
751
- Parameters
752
- ----------
753
- G : graph
754
- A NetworkX graph.
755
-
756
- S : list or set
757
- S is a group of nodes which belong to G, for which group in-degree
758
- centrality is to be calculated.
759
-
760
- Returns
761
- -------
762
- centrality : float
763
- Group out-degree centrality of the group S.
764
-
765
- Raises
766
- ------
767
- NetworkXNotImplemented
768
- If G is undirected.
769
-
770
- NodeNotFound
771
- If node(s) in S are not in G.
772
-
773
- See Also
774
- --------
775
- degree_centrality
776
- group_degree_centrality
777
- group_in_degree_centrality
778
-
779
- Notes
780
- -----
781
- The number of nodes in the group must be a maximum of n - 1 where `n`
782
- is the total number of nodes in the graph.
783
-
784
- `G.neighbors(i)` gives nodes with an outward edge from i, in a DiGraph,
785
- so for group out-degree centrality, the graph itself is used.
786
- """
787
- return group_degree_centrality(G, S)