okstra 0.130.3 → 0.131.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (367) hide show
  1. package/README.md +0 -1
  2. package/docs/architecture.md +2 -2
  3. package/docs/cli.md +1 -1
  4. package/docs/for-ai/README.md +0 -2
  5. package/docs/for-ai/skills/okstra-run.md +13 -2
  6. package/docs/for-ai/skills/okstra-setup.md +4 -1
  7. package/docs/project-structure-overview.md +5 -4
  8. package/docs/task-process/implementation-planning.md +13 -0
  9. package/docs/task-process/implementation.md +17 -2
  10. package/package.json +1 -1
  11. package/runtime/BUILD.json +2 -2
  12. package/runtime/agents/workers/report-writer-worker.md +7 -0
  13. package/runtime/bin/lib/okstra/usage.sh +4 -4
  14. package/runtime/prompts/lead/okstra-lead-contract.md +2 -2
  15. package/runtime/prompts/lead/plan-body-verification.md +26 -5
  16. package/runtime/prompts/lead/report-writer.md +6 -2
  17. package/runtime/prompts/profiles/_common-contract.md +2 -1
  18. package/runtime/prompts/profiles/_implementation-deliverable.md +6 -1
  19. package/runtime/prompts/profiles/_implementation-executor.md +2 -2
  20. package/runtime/prompts/profiles/_implementation-verifier.md +33 -10
  21. package/runtime/prompts/profiles/final-verification.md +21 -6
  22. package/runtime/prompts/profiles/implementation-planning.md +21 -4
  23. package/runtime/python/okstra_ctl/codex_dispatch.py +31 -0
  24. package/runtime/python/okstra_ctl/conformance.py +49 -11
  25. package/runtime/python/okstra_ctl/report_finalize.py +52 -1
  26. package/runtime/python/okstra_ctl/report_views.py +32 -5
  27. package/runtime/python/okstra_ctl/run.py +15 -3
  28. package/runtime/python/okstra_ctl/worker_prompt_contract.py +14 -6
  29. package/runtime/python/okstra_ctl/worker_prompt_policy.py +19 -1
  30. package/runtime/python/okstra_vendor/__init__.py +0 -44
  31. package/runtime/schemas/final-report-v1.0.schema.json +101 -6
  32. package/runtime/skills/okstra-run/SKILL.md +11 -4
  33. package/runtime/skills/okstra-setup/SKILL.md +3 -2
  34. package/runtime/skills/okstra-setup/references/project-config.md +16 -7
  35. package/runtime/templates/reports/final-report.template.md +18 -12
  36. package/runtime/templates/reports/i18n/en.json +1 -0
  37. package/runtime/templates/reports/i18n/ko.json +1 -0
  38. package/runtime/templates/reports/report.css +18 -0
  39. package/runtime/validators/lib/fixtures.sh +6 -0
  40. package/runtime/validators/validate-run.py +1722 -98
  41. package/src/cli-registry.mjs +0 -7
  42. package/src/commands/lifecycle/doctor.mjs +0 -9
  43. package/src/lib/skill-catalog.mjs +0 -1
  44. package/docs/for-ai/skills/okstra-graphify.md +0 -64
  45. package/runtime/python/okstra_ctl/graphify_cmd.py +0 -225
  46. package/runtime/python/okstra_vendor/graphify/.vendored-version +0 -1
  47. package/runtime/python/okstra_vendor/graphify/__init__.py +0 -28
  48. package/runtime/python/okstra_vendor/graphify/__main__.py +0 -1371
  49. package/runtime/python/okstra_vendor/graphify/analyze.py +0 -540
  50. package/runtime/python/okstra_vendor/graphify/benchmark.py +0 -129
  51. package/runtime/python/okstra_vendor/graphify/build.py +0 -107
  52. package/runtime/python/okstra_vendor/graphify/cache.py +0 -169
  53. package/runtime/python/okstra_vendor/graphify/cluster.py +0 -137
  54. package/runtime/python/okstra_vendor/graphify/detect.py +0 -510
  55. package/runtime/python/okstra_vendor/graphify/export.py +0 -1014
  56. package/runtime/python/okstra_vendor/graphify/extract.py +0 -3277
  57. package/runtime/python/okstra_vendor/graphify/hooks.py +0 -220
  58. package/runtime/python/okstra_vendor/graphify/ingest.py +0 -297
  59. package/runtime/python/okstra_vendor/graphify/manifest.py +0 -4
  60. package/runtime/python/okstra_vendor/graphify/report.py +0 -175
  61. package/runtime/python/okstra_vendor/graphify/security.py +0 -203
  62. package/runtime/python/okstra_vendor/graphify/serve.py +0 -373
  63. package/runtime/python/okstra_vendor/graphify/skill-aider.md +0 -1184
  64. package/runtime/python/okstra_vendor/graphify/skill-claw.md +0 -1184
  65. package/runtime/python/okstra_vendor/graphify/skill-codex.md +0 -1242
  66. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +0 -1268
  67. package/runtime/python/okstra_vendor/graphify/skill-droid.md +0 -1239
  68. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +0 -1183
  69. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +0 -1238
  70. package/runtime/python/okstra_vendor/graphify/skill-trae.md +0 -1208
  71. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +0 -253
  72. package/runtime/python/okstra_vendor/graphify/skill-windows.md +0 -1245
  73. package/runtime/python/okstra_vendor/graphify/skill.md +0 -1319
  74. package/runtime/python/okstra_vendor/graphify/transcribe.py +0 -182
  75. package/runtime/python/okstra_vendor/graphify/validate.py +0 -72
  76. package/runtime/python/okstra_vendor/graphify/watch.py +0 -188
  77. package/runtime/python/okstra_vendor/graphify/wiki.py +0 -214
  78. package/runtime/python/okstra_vendor/networkx/__init__.py +0 -62
  79. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +0 -134
  80. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +0 -26
  81. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +0 -259
  82. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +0 -71
  83. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +0 -412
  84. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +0 -396
  85. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +0 -150
  86. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +0 -149
  87. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +0 -369
  88. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +0 -44
  89. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +0 -143
  90. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +0 -53
  91. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +0 -265
  92. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +0 -1508
  93. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +0 -255
  94. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +0 -83
  95. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +0 -5
  96. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +0 -122
  97. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +0 -302
  98. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +0 -255
  99. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +0 -160
  100. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +0 -127
  101. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +0 -164
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +0 -88
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +0 -322
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +0 -290
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +0 -289
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +0 -57
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +0 -360
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +0 -105
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +0 -603
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +0 -316
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +0 -590
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +0 -232
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +0 -526
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +0 -112
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +0 -69
  116. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +0 -168
  117. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +0 -205
  118. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +0 -164
  119. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +0 -20
  120. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +0 -591
  121. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +0 -236
  122. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +0 -282
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +0 -364
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +0 -227
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +0 -96
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +0 -150
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +0 -107
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +0 -357
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +0 -130
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +0 -787
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +0 -88
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +0 -331
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +0 -150
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +0 -200
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +0 -128
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +0 -209
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +0 -141
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +0 -361
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +0 -181
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +0 -95
  141. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +0 -172
  142. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +0 -443
  143. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +0 -818
  144. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +0 -732
  145. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +0 -4
  146. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +0 -505
  147. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +0 -565
  148. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +0 -163
  149. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +0 -28
  150. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +0 -153
  151. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +0 -354
  152. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +0 -171
  153. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +0 -30
  154. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +0 -216
  155. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +0 -79
  156. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +0 -338
  157. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +0 -162
  158. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +0 -220
  159. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +0 -384
  160. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +0 -227
  161. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +0 -452
  162. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +0 -347
  163. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +0 -6
  164. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +0 -115
  165. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +0 -394
  166. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +0 -282
  167. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +0 -71
  168. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +0 -359
  169. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +0 -196
  170. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +0 -11
  171. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +0 -811
  172. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +0 -616
  173. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +0 -408
  174. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +0 -1270
  175. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +0 -592
  176. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +0 -220
  177. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +0 -235
  178. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +0 -152
  179. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +0 -88
  180. package/runtime/python/okstra_vendor/networkx/algorithms/core.py +0 -588
  181. package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +0 -142
  182. package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +0 -416
  183. package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +0 -1234
  184. package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +0 -677
  185. package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +0 -1392
  186. package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +0 -1095
  187. package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +0 -272
  188. package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +0 -142
  189. package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +0 -268
  190. package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +0 -167
  191. package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +0 -470
  192. package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +0 -11
  193. package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +0 -370
  194. package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +0 -407
  195. package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +0 -238
  196. package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +0 -241
  197. package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +0 -178
  198. package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +0 -611
  199. package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +0 -356
  200. package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +0 -662
  201. package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +0 -425
  202. package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +0 -300
  203. package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +0 -194
  204. package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +0 -435
  205. package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +0 -483
  206. package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +0 -57
  207. package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +0 -196
  208. package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +0 -107
  209. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +0 -7
  210. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +0 -1306
  211. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +0 -336
  212. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +0 -1262
  213. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +0 -352
  214. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +0 -308
  215. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +0 -264
  216. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +0 -1102
  217. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +0 -192
  218. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +0 -2
  219. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +0 -337
  220. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +0 -498
  221. package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +0 -687
  222. package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +0 -280
  223. package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +0 -1148
  224. package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +0 -27
  225. package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +0 -738
  226. package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +0 -78
  227. package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +0 -59
  228. package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +0 -219
  229. package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +0 -155
  230. package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +0 -4
  231. package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +0 -324
  232. package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +0 -468
  233. package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +0 -633
  234. package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +0 -77
  235. package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +0 -73
  236. package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +0 -464
  237. package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +0 -1463
  238. package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +0 -306
  239. package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +0 -98
  240. package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +0 -167
  241. package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +0 -138
  242. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +0 -5
  243. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +0 -239
  244. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +0 -264
  245. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +0 -716
  246. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +0 -625
  247. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +0 -2542
  248. package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +0 -2107
  249. package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +0 -966
  250. package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +0 -404
  251. package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +0 -30
  252. package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +0 -296
  253. package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +0 -374
  254. package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +0 -564
  255. package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +0 -406
  256. package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +0 -981
  257. package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +0 -142
  258. package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +0 -406
  259. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +0 -5
  260. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +0 -90
  261. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +0 -576
  262. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +0 -529
  263. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +0 -185
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@@ -1,554 +0,0 @@
1
- """
2
- Famous social networks.
3
- """
4
-
5
- import networkx as nx
6
-
7
- __all__ = [
8
- "karate_club_graph",
9
- "davis_southern_women_graph",
10
- "florentine_families_graph",
11
- "les_miserables_graph",
12
- ]
13
-
14
-
15
- @nx._dispatchable(graphs=None, returns_graph=True)
16
- def karate_club_graph():
17
- """Returns Zachary's Karate Club graph.
18
-
19
- Each node in the returned graph has a node attribute 'club' that
20
- indicates the name of the club to which the member represented by that node
21
- belongs, either 'Mr. Hi' or 'Officer'. Each edge has a weight based on the
22
- number of contexts in which that edge's incident node members interacted.
23
-
24
- The dataset is derived from the 'Club After Split From Data' column of Table 3 in [1]_.
25
- This was in turn derived from the 'Club After Fission' column of Table 1 in the
26
- same paper. Note that the nodes are 0-indexed in NetworkX, but 1-indexed in the
27
- paper (the 'Individual Number in Matrix C' column of Table 3 starts at 1). This
28
- means, for example, that ``G.nodes[9]["club"]`` returns 'Officer', which
29
- corresponds to row 10 of Table 3 in the paper.
30
-
31
- Examples
32
- --------
33
- To get the name of the club to which a node belongs:
34
-
35
- >>> G = nx.karate_club_graph()
36
- >>> G.nodes[5]["club"]
37
- 'Mr. Hi'
38
- >>> G.nodes[9]["club"]
39
- 'Officer'
40
-
41
- References
42
- ----------
43
- .. [1] Zachary, Wayne W.
44
- "An Information Flow Model for Conflict and Fission in Small Groups."
45
- *Journal of Anthropological Research*, 33, 452--473, (1977).
46
- """
47
- # Create the set of all members, and the members of each club.
48
- all_members = set(range(34))
49
- club1 = {0, 1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 16, 17, 19, 21}
50
- # club2 = all_members - club1
51
-
52
- G = nx.Graph()
53
- G.add_nodes_from(all_members)
54
- G.name = "Zachary's Karate Club"
55
-
56
- zacharydat = """\
57
- 0 4 5 3 3 3 3 2 2 0 2 3 2 3 0 0 0 2 0 2 0 2 0 0 0 0 0 0 0 0 0 2 0 0
58
- 4 0 6 3 0 0 0 4 0 0 0 0 0 5 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 0 2 0 0 0
59
- 5 6 0 3 0 0 0 4 5 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 3 0
60
- 3 3 3 0 0 0 0 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
61
- 3 0 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
62
- 3 0 0 0 0 0 5 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
63
- 3 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
64
- 2 4 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
65
- 2 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 4 3
66
- 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
67
- 2 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
68
- 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
69
- 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
70
- 3 5 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
71
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2
72
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4
73
- 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
74
- 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
75
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2
76
- 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
77
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1
78
- 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
79
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0
80
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 4 0 2 0 0 5 4
81
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 0 0 0 2 0 0
82
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 7 0 0
83
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 2
84
- 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 4
85
- 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2
86
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 4 0 0 0 0 0 3 2
87
- 0 2 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
88
- 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 2 0 0 0 4 4
89
- 0 0 2 0 0 0 0 0 3 0 0 0 0 0 3 3 0 0 1 0 3 0 2 5 0 0 0 0 0 4 3 4 0 5
90
- 0 0 0 0 0 0 0 0 4 2 0 0 0 3 2 4 0 0 2 1 1 0 3 4 0 0 2 4 2 2 3 4 5 0"""
91
-
92
- for row, line in enumerate(zacharydat.split("\n")):
93
- thisrow = [int(b) for b in line.split()]
94
- for col, entry in enumerate(thisrow):
95
- if entry >= 1:
96
- G.add_edge(row, col, weight=entry)
97
-
98
- # Add the name of each member's club as a node attribute.
99
- for v in G:
100
- G.nodes[v]["club"] = "Mr. Hi" if v in club1 else "Officer"
101
- return G
102
-
103
-
104
- @nx._dispatchable(graphs=None, returns_graph=True)
105
- def davis_southern_women_graph():
106
- """Returns Davis Southern women social network.
107
-
108
- This is a bipartite graph.
109
-
110
- References
111
- ----------
112
- .. [1] A. Davis, Gardner, B. B., Gardner, M. R., 1941. Deep South.
113
- University of Chicago Press, Chicago, IL.
114
- """
115
- G = nx.Graph()
116
- # Top nodes
117
- women = [
118
- "Evelyn Jefferson",
119
- "Laura Mandeville",
120
- "Theresa Anderson",
121
- "Brenda Rogers",
122
- "Charlotte McDowd",
123
- "Frances Anderson",
124
- "Eleanor Nye",
125
- "Pearl Oglethorpe",
126
- "Ruth DeSand",
127
- "Verne Sanderson",
128
- "Myra Liddel",
129
- "Katherina Rogers",
130
- "Sylvia Avondale",
131
- "Nora Fayette",
132
- "Helen Lloyd",
133
- "Dorothy Murchison",
134
- "Olivia Carleton",
135
- "Flora Price",
136
- ]
137
- G.add_nodes_from(women, bipartite=0)
138
- # Bottom nodes
139
- events = [
140
- "E1",
141
- "E2",
142
- "E3",
143
- "E4",
144
- "E5",
145
- "E6",
146
- "E7",
147
- "E8",
148
- "E9",
149
- "E10",
150
- "E11",
151
- "E12",
152
- "E13",
153
- "E14",
154
- ]
155
- G.add_nodes_from(events, bipartite=1)
156
-
157
- G.add_edges_from(
158
- [
159
- ("Evelyn Jefferson", "E1"),
160
- ("Evelyn Jefferson", "E2"),
161
- ("Evelyn Jefferson", "E3"),
162
- ("Evelyn Jefferson", "E4"),
163
- ("Evelyn Jefferson", "E5"),
164
- ("Evelyn Jefferson", "E6"),
165
- ("Evelyn Jefferson", "E8"),
166
- ("Evelyn Jefferson", "E9"),
167
- ("Laura Mandeville", "E1"),
168
- ("Laura Mandeville", "E2"),
169
- ("Laura Mandeville", "E3"),
170
- ("Laura Mandeville", "E5"),
171
- ("Laura Mandeville", "E6"),
172
- ("Laura Mandeville", "E7"),
173
- ("Laura Mandeville", "E8"),
174
- ("Theresa Anderson", "E2"),
175
- ("Theresa Anderson", "E3"),
176
- ("Theresa Anderson", "E4"),
177
- ("Theresa Anderson", "E5"),
178
- ("Theresa Anderson", "E6"),
179
- ("Theresa Anderson", "E7"),
180
- ("Theresa Anderson", "E8"),
181
- ("Theresa Anderson", "E9"),
182
- ("Brenda Rogers", "E1"),
183
- ("Brenda Rogers", "E3"),
184
- ("Brenda Rogers", "E4"),
185
- ("Brenda Rogers", "E5"),
186
- ("Brenda Rogers", "E6"),
187
- ("Brenda Rogers", "E7"),
188
- ("Brenda Rogers", "E8"),
189
- ("Charlotte McDowd", "E3"),
190
- ("Charlotte McDowd", "E4"),
191
- ("Charlotte McDowd", "E5"),
192
- ("Charlotte McDowd", "E7"),
193
- ("Frances Anderson", "E3"),
194
- ("Frances Anderson", "E5"),
195
- ("Frances Anderson", "E6"),
196
- ("Frances Anderson", "E8"),
197
- ("Eleanor Nye", "E5"),
198
- ("Eleanor Nye", "E6"),
199
- ("Eleanor Nye", "E7"),
200
- ("Eleanor Nye", "E8"),
201
- ("Pearl Oglethorpe", "E6"),
202
- ("Pearl Oglethorpe", "E8"),
203
- ("Pearl Oglethorpe", "E9"),
204
- ("Ruth DeSand", "E5"),
205
- ("Ruth DeSand", "E7"),
206
- ("Ruth DeSand", "E8"),
207
- ("Ruth DeSand", "E9"),
208
- ("Verne Sanderson", "E7"),
209
- ("Verne Sanderson", "E8"),
210
- ("Verne Sanderson", "E9"),
211
- ("Verne Sanderson", "E12"),
212
- ("Myra Liddel", "E8"),
213
- ("Myra Liddel", "E9"),
214
- ("Myra Liddel", "E10"),
215
- ("Myra Liddel", "E12"),
216
- ("Katherina Rogers", "E8"),
217
- ("Katherina Rogers", "E9"),
218
- ("Katherina Rogers", "E10"),
219
- ("Katherina Rogers", "E12"),
220
- ("Katherina Rogers", "E13"),
221
- ("Katherina Rogers", "E14"),
222
- ("Sylvia Avondale", "E7"),
223
- ("Sylvia Avondale", "E8"),
224
- ("Sylvia Avondale", "E9"),
225
- ("Sylvia Avondale", "E10"),
226
- ("Sylvia Avondale", "E12"),
227
- ("Sylvia Avondale", "E13"),
228
- ("Sylvia Avondale", "E14"),
229
- ("Nora Fayette", "E6"),
230
- ("Nora Fayette", "E7"),
231
- ("Nora Fayette", "E9"),
232
- ("Nora Fayette", "E10"),
233
- ("Nora Fayette", "E11"),
234
- ("Nora Fayette", "E12"),
235
- ("Nora Fayette", "E13"),
236
- ("Nora Fayette", "E14"),
237
- ("Helen Lloyd", "E7"),
238
- ("Helen Lloyd", "E8"),
239
- ("Helen Lloyd", "E10"),
240
- ("Helen Lloyd", "E11"),
241
- ("Helen Lloyd", "E12"),
242
- ("Dorothy Murchison", "E8"),
243
- ("Dorothy Murchison", "E9"),
244
- ("Olivia Carleton", "E9"),
245
- ("Olivia Carleton", "E11"),
246
- ("Flora Price", "E9"),
247
- ("Flora Price", "E11"),
248
- ]
249
- )
250
- G.graph["top"] = women
251
- G.graph["bottom"] = events
252
- return G
253
-
254
-
255
- @nx._dispatchable(graphs=None, returns_graph=True)
256
- def florentine_families_graph():
257
- """Returns Florentine families graph.
258
-
259
- References
260
- ----------
261
- .. [1] Ronald L. Breiger and Philippa E. Pattison
262
- Cumulated social roles: The duality of persons and their algebras,1
263
- Social Networks, Volume 8, Issue 3, September 1986, Pages 215-256
264
- """
265
- G = nx.Graph()
266
- G.add_edge("Acciaiuoli", "Medici")
267
- G.add_edge("Castellani", "Peruzzi")
268
- G.add_edge("Castellani", "Strozzi")
269
- G.add_edge("Castellani", "Barbadori")
270
- G.add_edge("Medici", "Barbadori")
271
- G.add_edge("Medici", "Ridolfi")
272
- G.add_edge("Medici", "Tornabuoni")
273
- G.add_edge("Medici", "Albizzi")
274
- G.add_edge("Medici", "Salviati")
275
- G.add_edge("Salviati", "Pazzi")
276
- G.add_edge("Peruzzi", "Strozzi")
277
- G.add_edge("Peruzzi", "Bischeri")
278
- G.add_edge("Strozzi", "Ridolfi")
279
- G.add_edge("Strozzi", "Bischeri")
280
- G.add_edge("Ridolfi", "Tornabuoni")
281
- G.add_edge("Tornabuoni", "Guadagni")
282
- G.add_edge("Albizzi", "Ginori")
283
- G.add_edge("Albizzi", "Guadagni")
284
- G.add_edge("Bischeri", "Guadagni")
285
- G.add_edge("Guadagni", "Lamberteschi")
286
- return G
287
-
288
-
289
- @nx._dispatchable(graphs=None, returns_graph=True)
290
- def les_miserables_graph():
291
- """Returns coappearance network of characters in the novel Les Miserables.
292
-
293
- References
294
- ----------
295
- .. [1] D. E. Knuth, 1993.
296
- The Stanford GraphBase: a platform for combinatorial computing,
297
- pp. 74-87. New York: AcM Press.
298
- """
299
- G = nx.Graph()
300
- G.add_edge("Napoleon", "Myriel", weight=1)
301
- G.add_edge("MlleBaptistine", "Myriel", weight=8)
302
- G.add_edge("MmeMagloire", "Myriel", weight=10)
303
- G.add_edge("MmeMagloire", "MlleBaptistine", weight=6)
304
- G.add_edge("CountessDeLo", "Myriel", weight=1)
305
- G.add_edge("Geborand", "Myriel", weight=1)
306
- G.add_edge("Champtercier", "Myriel", weight=1)
307
- G.add_edge("Cravatte", "Myriel", weight=1)
308
- G.add_edge("Count", "Myriel", weight=2)
309
- G.add_edge("OldMan", "Myriel", weight=1)
310
- G.add_edge("Valjean", "Labarre", weight=1)
311
- G.add_edge("Valjean", "MmeMagloire", weight=3)
312
- G.add_edge("Valjean", "MlleBaptistine", weight=3)
313
- G.add_edge("Valjean", "Myriel", weight=5)
314
- G.add_edge("Marguerite", "Valjean", weight=1)
315
- G.add_edge("MmeDeR", "Valjean", weight=1)
316
- G.add_edge("Isabeau", "Valjean", weight=1)
317
- G.add_edge("Gervais", "Valjean", weight=1)
318
- G.add_edge("Listolier", "Tholomyes", weight=4)
319
- G.add_edge("Fameuil", "Tholomyes", weight=4)
320
- G.add_edge("Fameuil", "Listolier", weight=4)
321
- G.add_edge("Blacheville", "Tholomyes", weight=4)
322
- G.add_edge("Blacheville", "Listolier", weight=4)
323
- G.add_edge("Blacheville", "Fameuil", weight=4)
324
- G.add_edge("Favourite", "Tholomyes", weight=3)
325
- G.add_edge("Favourite", "Listolier", weight=3)
326
- G.add_edge("Favourite", "Fameuil", weight=3)
327
- G.add_edge("Favourite", "Blacheville", weight=4)
328
- G.add_edge("Dahlia", "Tholomyes", weight=3)
329
- G.add_edge("Dahlia", "Listolier", weight=3)
330
- G.add_edge("Dahlia", "Fameuil", weight=3)
331
- G.add_edge("Dahlia", "Blacheville", weight=3)
332
- G.add_edge("Dahlia", "Favourite", weight=5)
333
- G.add_edge("Zephine", "Tholomyes", weight=3)
334
- G.add_edge("Zephine", "Listolier", weight=3)
335
- G.add_edge("Zephine", "Fameuil", weight=3)
336
- G.add_edge("Zephine", "Blacheville", weight=3)
337
- G.add_edge("Zephine", "Favourite", weight=4)
338
- G.add_edge("Zephine", "Dahlia", weight=4)
339
- G.add_edge("Fantine", "Tholomyes", weight=3)
340
- G.add_edge("Fantine", "Listolier", weight=3)
341
- G.add_edge("Fantine", "Fameuil", weight=3)
342
- G.add_edge("Fantine", "Blacheville", weight=3)
343
- G.add_edge("Fantine", "Favourite", weight=4)
344
- G.add_edge("Fantine", "Dahlia", weight=4)
345
- G.add_edge("Fantine", "Zephine", weight=4)
346
- G.add_edge("Fantine", "Marguerite", weight=2)
347
- G.add_edge("Fantine", "Valjean", weight=9)
348
- G.add_edge("MmeThenardier", "Fantine", weight=2)
349
- G.add_edge("MmeThenardier", "Valjean", weight=7)
350
- G.add_edge("Thenardier", "MmeThenardier", weight=13)
351
- G.add_edge("Thenardier", "Fantine", weight=1)
352
- G.add_edge("Thenardier", "Valjean", weight=12)
353
- G.add_edge("Cosette", "MmeThenardier", weight=4)
354
- G.add_edge("Cosette", "Valjean", weight=31)
355
- G.add_edge("Cosette", "Tholomyes", weight=1)
356
- G.add_edge("Cosette", "Thenardier", weight=1)
357
- G.add_edge("Javert", "Valjean", weight=17)
358
- G.add_edge("Javert", "Fantine", weight=5)
359
- G.add_edge("Javert", "Thenardier", weight=5)
360
- G.add_edge("Javert", "MmeThenardier", weight=1)
361
- G.add_edge("Javert", "Cosette", weight=1)
362
- G.add_edge("Fauchelevent", "Valjean", weight=8)
363
- G.add_edge("Fauchelevent", "Javert", weight=1)
364
- G.add_edge("Bamatabois", "Fantine", weight=1)
365
- G.add_edge("Bamatabois", "Javert", weight=1)
366
- G.add_edge("Bamatabois", "Valjean", weight=2)
367
- G.add_edge("Perpetue", "Fantine", weight=1)
368
- G.add_edge("Simplice", "Perpetue", weight=2)
369
- G.add_edge("Simplice", "Valjean", weight=3)
370
- G.add_edge("Simplice", "Fantine", weight=2)
371
- G.add_edge("Simplice", "Javert", weight=1)
372
- G.add_edge("Scaufflaire", "Valjean", weight=1)
373
- G.add_edge("Woman1", "Valjean", weight=2)
374
- G.add_edge("Woman1", "Javert", weight=1)
375
- G.add_edge("Judge", "Valjean", weight=3)
376
- G.add_edge("Judge", "Bamatabois", weight=2)
377
- G.add_edge("Champmathieu", "Valjean", weight=3)
378
- G.add_edge("Champmathieu", "Judge", weight=3)
379
- G.add_edge("Champmathieu", "Bamatabois", weight=2)
380
- G.add_edge("Brevet", "Judge", weight=2)
381
- G.add_edge("Brevet", "Champmathieu", weight=2)
382
- G.add_edge("Brevet", "Valjean", weight=2)
383
- G.add_edge("Brevet", "Bamatabois", weight=1)
384
- G.add_edge("Chenildieu", "Judge", weight=2)
385
- G.add_edge("Chenildieu", "Champmathieu", weight=2)
386
- G.add_edge("Chenildieu", "Brevet", weight=2)
387
- G.add_edge("Chenildieu", "Valjean", weight=2)
388
- G.add_edge("Chenildieu", "Bamatabois", weight=1)
389
- G.add_edge("Cochepaille", "Judge", weight=2)
390
- G.add_edge("Cochepaille", "Champmathieu", weight=2)
391
- G.add_edge("Cochepaille", "Brevet", weight=2)
392
- G.add_edge("Cochepaille", "Chenildieu", weight=2)
393
- G.add_edge("Cochepaille", "Valjean", weight=2)
394
- G.add_edge("Cochepaille", "Bamatabois", weight=1)
395
- G.add_edge("Pontmercy", "Thenardier", weight=1)
396
- G.add_edge("Boulatruelle", "Thenardier", weight=1)
397
- G.add_edge("Eponine", "MmeThenardier", weight=2)
398
- G.add_edge("Eponine", "Thenardier", weight=3)
399
- G.add_edge("Anzelma", "Eponine", weight=2)
400
- G.add_edge("Anzelma", "Thenardier", weight=2)
401
- G.add_edge("Anzelma", "MmeThenardier", weight=1)
402
- G.add_edge("Woman2", "Valjean", weight=3)
403
- G.add_edge("Woman2", "Cosette", weight=1)
404
- G.add_edge("Woman2", "Javert", weight=1)
405
- G.add_edge("MotherInnocent", "Fauchelevent", weight=3)
406
- G.add_edge("MotherInnocent", "Valjean", weight=1)
407
- G.add_edge("Gribier", "Fauchelevent", weight=2)
408
- G.add_edge("MmeBurgon", "Jondrette", weight=1)
409
- G.add_edge("Gavroche", "MmeBurgon", weight=2)
410
- G.add_edge("Gavroche", "Thenardier", weight=1)
411
- G.add_edge("Gavroche", "Javert", weight=1)
412
- G.add_edge("Gavroche", "Valjean", weight=1)
413
- G.add_edge("Gillenormand", "Cosette", weight=3)
414
- G.add_edge("Gillenormand", "Valjean", weight=2)
415
- G.add_edge("Magnon", "Gillenormand", weight=1)
416
- G.add_edge("Magnon", "MmeThenardier", weight=1)
417
- G.add_edge("MlleGillenormand", "Gillenormand", weight=9)
418
- G.add_edge("MlleGillenormand", "Cosette", weight=2)
419
- G.add_edge("MlleGillenormand", "Valjean", weight=2)
420
- G.add_edge("MmePontmercy", "MlleGillenormand", weight=1)
421
- G.add_edge("MmePontmercy", "Pontmercy", weight=1)
422
- G.add_edge("MlleVaubois", "MlleGillenormand", weight=1)
423
- G.add_edge("LtGillenormand", "MlleGillenormand", weight=2)
424
- G.add_edge("LtGillenormand", "Gillenormand", weight=1)
425
- G.add_edge("LtGillenormand", "Cosette", weight=1)
426
- G.add_edge("Marius", "MlleGillenormand", weight=6)
427
- G.add_edge("Marius", "Gillenormand", weight=12)
428
- G.add_edge("Marius", "Pontmercy", weight=1)
429
- G.add_edge("Marius", "LtGillenormand", weight=1)
430
- G.add_edge("Marius", "Cosette", weight=21)
431
- G.add_edge("Marius", "Valjean", weight=19)
432
- G.add_edge("Marius", "Tholomyes", weight=1)
433
- G.add_edge("Marius", "Thenardier", weight=2)
434
- G.add_edge("Marius", "Eponine", weight=5)
435
- G.add_edge("Marius", "Gavroche", weight=4)
436
- G.add_edge("BaronessT", "Gillenormand", weight=1)
437
- G.add_edge("BaronessT", "Marius", weight=1)
438
- G.add_edge("Mabeuf", "Marius", weight=1)
439
- G.add_edge("Mabeuf", "Eponine", weight=1)
440
- G.add_edge("Mabeuf", "Gavroche", weight=1)
441
- G.add_edge("Enjolras", "Marius", weight=7)
442
- G.add_edge("Enjolras", "Gavroche", weight=7)
443
- G.add_edge("Enjolras", "Javert", weight=6)
444
- G.add_edge("Enjolras", "Mabeuf", weight=1)
445
- G.add_edge("Enjolras", "Valjean", weight=4)
446
- G.add_edge("Combeferre", "Enjolras", weight=15)
447
- G.add_edge("Combeferre", "Marius", weight=5)
448
- G.add_edge("Combeferre", "Gavroche", weight=6)
449
- G.add_edge("Combeferre", "Mabeuf", weight=2)
450
- G.add_edge("Prouvaire", "Gavroche", weight=1)
451
- G.add_edge("Prouvaire", "Enjolras", weight=4)
452
- G.add_edge("Prouvaire", "Combeferre", weight=2)
453
- G.add_edge("Feuilly", "Gavroche", weight=2)
454
- G.add_edge("Feuilly", "Enjolras", weight=6)
455
- G.add_edge("Feuilly", "Prouvaire", weight=2)
456
- G.add_edge("Feuilly", "Combeferre", weight=5)
457
- G.add_edge("Feuilly", "Mabeuf", weight=1)
458
- G.add_edge("Feuilly", "Marius", weight=1)
459
- G.add_edge("Courfeyrac", "Marius", weight=9)
460
- G.add_edge("Courfeyrac", "Enjolras", weight=17)
461
- G.add_edge("Courfeyrac", "Combeferre", weight=13)
462
- G.add_edge("Courfeyrac", "Gavroche", weight=7)
463
- G.add_edge("Courfeyrac", "Mabeuf", weight=2)
464
- G.add_edge("Courfeyrac", "Eponine", weight=1)
465
- G.add_edge("Courfeyrac", "Feuilly", weight=6)
466
- G.add_edge("Courfeyrac", "Prouvaire", weight=3)
467
- G.add_edge("Bahorel", "Combeferre", weight=5)
468
- G.add_edge("Bahorel", "Gavroche", weight=5)
469
- G.add_edge("Bahorel", "Courfeyrac", weight=6)
470
- G.add_edge("Bahorel", "Mabeuf", weight=2)
471
- G.add_edge("Bahorel", "Enjolras", weight=4)
472
- G.add_edge("Bahorel", "Feuilly", weight=3)
473
- G.add_edge("Bahorel", "Prouvaire", weight=2)
474
- G.add_edge("Bahorel", "Marius", weight=1)
475
- G.add_edge("Bossuet", "Marius", weight=5)
476
- G.add_edge("Bossuet", "Courfeyrac", weight=12)
477
- G.add_edge("Bossuet", "Gavroche", weight=5)
478
- G.add_edge("Bossuet", "Bahorel", weight=4)
479
- G.add_edge("Bossuet", "Enjolras", weight=10)
480
- G.add_edge("Bossuet", "Feuilly", weight=6)
481
- G.add_edge("Bossuet", "Prouvaire", weight=2)
482
- G.add_edge("Bossuet", "Combeferre", weight=9)
483
- G.add_edge("Bossuet", "Mabeuf", weight=1)
484
- G.add_edge("Bossuet", "Valjean", weight=1)
485
- G.add_edge("Joly", "Bahorel", weight=5)
486
- G.add_edge("Joly", "Bossuet", weight=7)
487
- G.add_edge("Joly", "Gavroche", weight=3)
488
- G.add_edge("Joly", "Courfeyrac", weight=5)
489
- G.add_edge("Joly", "Enjolras", weight=5)
490
- G.add_edge("Joly", "Feuilly", weight=5)
491
- G.add_edge("Joly", "Prouvaire", weight=2)
492
- G.add_edge("Joly", "Combeferre", weight=5)
493
- G.add_edge("Joly", "Mabeuf", weight=1)
494
- G.add_edge("Joly", "Marius", weight=2)
495
- G.add_edge("Grantaire", "Bossuet", weight=3)
496
- G.add_edge("Grantaire", "Enjolras", weight=3)
497
- G.add_edge("Grantaire", "Combeferre", weight=1)
498
- G.add_edge("Grantaire", "Courfeyrac", weight=2)
499
- G.add_edge("Grantaire", "Joly", weight=2)
500
- G.add_edge("Grantaire", "Gavroche", weight=1)
501
- G.add_edge("Grantaire", "Bahorel", weight=1)
502
- G.add_edge("Grantaire", "Feuilly", weight=1)
503
- G.add_edge("Grantaire", "Prouvaire", weight=1)
504
- G.add_edge("MotherPlutarch", "Mabeuf", weight=3)
505
- G.add_edge("Gueulemer", "Thenardier", weight=5)
506
- G.add_edge("Gueulemer", "Valjean", weight=1)
507
- G.add_edge("Gueulemer", "MmeThenardier", weight=1)
508
- G.add_edge("Gueulemer", "Javert", weight=1)
509
- G.add_edge("Gueulemer", "Gavroche", weight=1)
510
- G.add_edge("Gueulemer", "Eponine", weight=1)
511
- G.add_edge("Babet", "Thenardier", weight=6)
512
- G.add_edge("Babet", "Gueulemer", weight=6)
513
- G.add_edge("Babet", "Valjean", weight=1)
514
- G.add_edge("Babet", "MmeThenardier", weight=1)
515
- G.add_edge("Babet", "Javert", weight=2)
516
- G.add_edge("Babet", "Gavroche", weight=1)
517
- G.add_edge("Babet", "Eponine", weight=1)
518
- G.add_edge("Claquesous", "Thenardier", weight=4)
519
- G.add_edge("Claquesous", "Babet", weight=4)
520
- G.add_edge("Claquesous", "Gueulemer", weight=4)
521
- G.add_edge("Claquesous", "Valjean", weight=1)
522
- G.add_edge("Claquesous", "MmeThenardier", weight=1)
523
- G.add_edge("Claquesous", "Javert", weight=1)
524
- G.add_edge("Claquesous", "Eponine", weight=1)
525
- G.add_edge("Claquesous", "Enjolras", weight=1)
526
- G.add_edge("Montparnasse", "Javert", weight=1)
527
- G.add_edge("Montparnasse", "Babet", weight=2)
528
- G.add_edge("Montparnasse", "Gueulemer", weight=2)
529
- G.add_edge("Montparnasse", "Claquesous", weight=2)
530
- G.add_edge("Montparnasse", "Valjean", weight=1)
531
- G.add_edge("Montparnasse", "Gavroche", weight=1)
532
- G.add_edge("Montparnasse", "Eponine", weight=1)
533
- G.add_edge("Montparnasse", "Thenardier", weight=1)
534
- G.add_edge("Toussaint", "Cosette", weight=2)
535
- G.add_edge("Toussaint", "Javert", weight=1)
536
- G.add_edge("Toussaint", "Valjean", weight=1)
537
- G.add_edge("Child1", "Gavroche", weight=2)
538
- G.add_edge("Child2", "Gavroche", weight=2)
539
- G.add_edge("Child2", "Child1", weight=3)
540
- G.add_edge("Brujon", "Babet", weight=3)
541
- G.add_edge("Brujon", "Gueulemer", weight=3)
542
- G.add_edge("Brujon", "Thenardier", weight=3)
543
- G.add_edge("Brujon", "Gavroche", weight=1)
544
- G.add_edge("Brujon", "Eponine", weight=1)
545
- G.add_edge("Brujon", "Claquesous", weight=1)
546
- G.add_edge("Brujon", "Montparnasse", weight=1)
547
- G.add_edge("MmeHucheloup", "Bossuet", weight=1)
548
- G.add_edge("MmeHucheloup", "Joly", weight=1)
549
- G.add_edge("MmeHucheloup", "Grantaire", weight=1)
550
- G.add_edge("MmeHucheloup", "Bahorel", weight=1)
551
- G.add_edge("MmeHucheloup", "Courfeyrac", weight=1)
552
- G.add_edge("MmeHucheloup", "Gavroche", weight=1)
553
- G.add_edge("MmeHucheloup", "Enjolras", weight=1)
554
- return G
@@ -1,120 +0,0 @@
1
- """Generates graphs with a given eigenvector structure"""
2
-
3
- import networkx as nx
4
- from networkx.utils import np_random_state
5
-
6
- __all__ = ["spectral_graph_forge"]
7
-
8
-
9
- @np_random_state(3)
10
- @nx._dispatchable(preserve_edge_attrs={"G": {"weight": 1}}, returns_graph=True)
11
- def spectral_graph_forge(G, alpha, transformation="identity", seed=None):
12
- """Returns a random simple graph with spectrum resembling that of `G`
13
-
14
- This algorithm, called Spectral Graph Forge (SGF), computes the
15
- eigenvectors of a given graph adjacency matrix, filters them and
16
- builds a random graph with a similar eigenstructure.
17
- SGF has been proved to be particularly useful for synthesizing
18
- realistic social networks and it can also be used to anonymize
19
- graph sensitive data.
20
-
21
- Parameters
22
- ----------
23
- G : Graph
24
- alpha : float
25
- Ratio representing the percentage of eigenvectors of G to consider,
26
- values in [0,1].
27
- transformation : string, optional
28
- Represents the intended matrix linear transformation, possible values
29
- are 'identity' and 'modularity'
30
- seed : integer, random_state, or None (default)
31
- Indicator of numpy random number generation state.
32
- See :ref:`Randomness<randomness>`.
33
-
34
- Returns
35
- -------
36
- H : Graph
37
- A graph with a similar eigenvector structure of the input one.
38
-
39
- Raises
40
- ------
41
- NetworkXError
42
- If transformation has a value different from 'identity' or 'modularity'
43
-
44
- Notes
45
- -----
46
- Spectral Graph Forge (SGF) generates a random simple graph resembling the
47
- global properties of the given one.
48
- It leverages the low-rank approximation of the associated adjacency matrix
49
- driven by the *alpha* precision parameter.
50
- SGF preserves the number of nodes of the input graph and their ordering.
51
- This way, nodes of output graphs resemble the properties of the input one
52
- and attributes can be directly mapped.
53
-
54
- It considers the graph adjacency matrices which can optionally be
55
- transformed to other symmetric real matrices (currently transformation
56
- options include *identity* and *modularity*).
57
- The *modularity* transformation, in the sense of Newman's modularity matrix
58
- allows the focusing on community structure related properties of the graph.
59
-
60
- SGF applies a low-rank approximation whose fixed rank is computed from the
61
- ratio *alpha* of the input graph adjacency matrix dimension.
62
- This step performs a filtering on the input eigenvectors similar to the low
63
- pass filtering common in telecommunications.
64
-
65
- The filtered values (after truncation) are used as input to a Bernoulli
66
- sampling for constructing a random adjacency matrix.
67
-
68
- References
69
- ----------
70
- .. [1] L. Baldesi, C. T. Butts, A. Markopoulou, "Spectral Graph Forge:
71
- Graph Generation Targeting Modularity", IEEE Infocom, '18.
72
- https://arxiv.org/abs/1801.01715
73
- .. [2] M. Newman, "Networks: an introduction", Oxford university press,
74
- 2010
75
-
76
- Examples
77
- --------
78
- >>> G = nx.karate_club_graph()
79
- >>> H = nx.spectral_graph_forge(G, 0.3)
80
- >>>
81
- """
82
- import numpy as np
83
- import scipy as sp
84
-
85
- available_transformations = ["identity", "modularity"]
86
- alpha = np.clip(alpha, 0, 1)
87
- A = nx.to_numpy_array(G)
88
- n = A.shape[1]
89
- level = round(n * alpha)
90
-
91
- if transformation not in available_transformations:
92
- msg = f"{transformation!r} is not a valid transformation. "
93
- msg += f"Transformations: {available_transformations}"
94
- raise nx.NetworkXError(msg)
95
-
96
- K = np.ones((1, n)) @ A
97
-
98
- B = A
99
- if transformation == "modularity":
100
- B -= K.T @ K / K.sum()
101
-
102
- # Compute low-rank approximation of B
103
- evals, evecs = np.linalg.eigh(B)
104
- k = np.argsort(np.abs(evals))[::-1] # indices of evals in descending order
105
- evecs[:, k[np.arange(level, n)]] = 0 # set smallest eigenvectors to 0
106
- B = evecs @ np.diag(evals) @ evecs.T
107
-
108
- if transformation == "modularity":
109
- B += K.T @ K / K.sum()
110
-
111
- B = np.clip(B, 0, 1)
112
- np.fill_diagonal(B, 0)
113
-
114
- for i in range(n - 1):
115
- B[i, i + 1 :] = sp.stats.bernoulli.rvs(B[i, i + 1 :], random_state=seed)
116
- B[i + 1 :, i] = np.transpose(B[i, i + 1 :])
117
-
118
- H = nx.from_numpy_array(B)
119
-
120
- return H