oh-my-opencode 5.0.0-beta.26 → 5.0.0-beta.28

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Files changed (112) hide show
  1. package/dist/cli/config-manager/parse-opencode-config-file.d.ts +2 -1
  2. package/dist/cli/doctor/checks/system-plugin.d.ts +4 -3
  3. package/dist/cli/index.js +59 -45
  4. package/dist/cli-node/index.js +82 -45
  5. package/dist/hooks/todo-continuation-enforcer/types.d.ts +1 -0
  6. package/dist/index.js +53 -28
  7. package/dist/shared/index.d.ts +1 -0
  8. package/dist/shared/legacy-plugin-warning.d.ts +2 -1
  9. package/dist/shared/plugin-entry-migrator.d.ts +4 -3
  10. package/dist/shared/plugin-entry-shape.d.ts +6 -0
  11. package/dist/skills/data-scientist/SKILL.md +99 -239
  12. package/dist/skills/data-scientist/references/execution-surfaces.md +91 -0
  13. package/dist/skills/data-scientist/references/placement.md +74 -0
  14. package/dist/skills/data-scientist/references/polars-lane.md +95 -0
  15. package/dist/skills/data-scientist/references/uv-setup.md +1 -1
  16. package/dist/skills/data-scientist/references/visualization.md +64 -0
  17. package/dist/skills/data-scientist/scripts/ensure-js-deps.sh +28 -0
  18. package/dist/skills/data-scientist/scripts/ensure-py-deps.sh +37 -0
  19. package/dist/skills/ulw-research/SKILL.md +3 -1
  20. package/dist/tui.d.ts +12 -0
  21. package/dist/tui.js +3 -3
  22. package/package.json +15 -15
  23. package/packages/lsp-core/src/request-context.test.ts +29 -0
  24. package/packages/lsp-core/src/request-context.ts +1 -1
  25. package/packages/lsp-daemon/dist/cli.js +1 -1
  26. package/packages/lsp-daemon/dist/client.js +1 -1
  27. package/packages/lsp-daemon/dist/index.js +1 -1
  28. package/packages/lsp-tools-mcp/dist/cli.js +1 -1
  29. package/packages/lsp-tools-mcp/dist/mcp.js +1 -1
  30. package/packages/lsp-tools-mcp/dist/request-context.js +1 -1
  31. package/packages/lsp-tools-mcp/dist/tools.js +1 -1
  32. package/packages/omo-codex/plugin/.codex-plugin/plugin.json +1 -1
  33. package/packages/omo-codex/plugin/components/bootstrap/hooks/hooks.json +1 -1
  34. package/packages/omo-codex/plugin/components/bootstrap/package.json +1 -1
  35. package/packages/omo-codex/plugin/components/codegraph/package.json +1 -1
  36. package/packages/omo-codex/plugin/components/comment-checker/hooks/hooks.json +1 -1
  37. package/packages/omo-codex/plugin/components/comment-checker/package.json +1 -1
  38. package/packages/omo-codex/plugin/components/git-bash/hooks/hooks.json +2 -2
  39. package/packages/omo-codex/plugin/components/git-bash/package.json +1 -1
  40. package/packages/omo-codex/plugin/components/lazycodex-executor-verify/hooks/hooks.json +1 -1
  41. package/packages/omo-codex/plugin/components/lazycodex-executor-verify/package.json +1 -1
  42. package/packages/omo-codex/plugin/components/lsp/dist/.omo-runtime-manifest.json +2 -2
  43. package/packages/omo-codex/plugin/components/lsp/hooks/hooks.json +2 -2
  44. package/packages/omo-codex/plugin/components/lsp/package.json +1 -1
  45. package/packages/omo-codex/plugin/components/rules/hooks/hooks.json +4 -4
  46. package/packages/omo-codex/plugin/components/rules/package.json +1 -1
  47. package/packages/omo-codex/plugin/components/teammode/hooks/hooks.json +1 -1
  48. package/packages/omo-codex/plugin/components/teammode/package.json +1 -1
  49. package/packages/omo-codex/plugin/components/telemetry/hooks/hooks.json +1 -1
  50. package/packages/omo-codex/plugin/components/telemetry/package.json +1 -1
  51. package/packages/omo-codex/plugin/components/ultrawork/hooks/hooks.json +1 -1
  52. package/packages/omo-codex/plugin/components/ultrawork/package.json +1 -1
  53. package/packages/omo-codex/plugin/components/ulw-execute-continuation/hooks/hooks.json +2 -2
  54. package/packages/omo-codex/plugin/components/ulw-execute-continuation/package.json +1 -1
  55. package/packages/omo-codex/plugin/components/ulw-loop/hooks/hooks.json +4 -4
  56. package/packages/omo-codex/plugin/components/ulw-loop/package.json +1 -1
  57. package/packages/omo-codex/plugin/hooks/post-compact-resetting-git-bash-mcp-reminder.json +1 -1
  58. package/packages/omo-codex/plugin/hooks/post-compact-resetting-lsp-diagnostics-cache.json +1 -1
  59. package/packages/omo-codex/plugin/hooks/post-compact-resetting-project-rule-cache.json +1 -1
  60. package/packages/omo-codex/plugin/hooks/post-tool-use-checking-codegraph-init-guidance.json +1 -1
  61. package/packages/omo-codex/plugin/hooks/post-tool-use-checking-comments.json +1 -1
  62. package/packages/omo-codex/plugin/hooks/post-tool-use-checking-lsp-diagnostics.json +1 -1
  63. package/packages/omo-codex/plugin/hooks/post-tool-use-checking-thread-title-hygiene.json +1 -1
  64. package/packages/omo-codex/plugin/hooks/post-tool-use-matching-project-rules.json +1 -1
  65. package/packages/omo-codex/plugin/hooks/pre-tool-use-enforcing-unlimited-goal-budget.json +1 -1
  66. package/packages/omo-codex/plugin/hooks/pre-tool-use-guarding-ulw-loop-spawns.json +1 -1
  67. package/packages/omo-codex/plugin/hooks/pre-tool-use-recommending-git-bash-mcp.json +1 -1
  68. package/packages/omo-codex/plugin/hooks/session-start-checking-auto-update.json +1 -1
  69. package/packages/omo-codex/plugin/hooks/session-start-checking-bootstrap-provisioning.json +1 -1
  70. package/packages/omo-codex/plugin/hooks/session-start-checking-codegraph-bootstrap.json +1 -1
  71. package/packages/omo-codex/plugin/hooks/session-start-loading-project-rules.json +1 -1
  72. package/packages/omo-codex/plugin/hooks/session-start-recording-session-telemetry.json +1 -1
  73. package/packages/omo-codex/plugin/hooks/stop-checking-ulw-execute-continuation.json +1 -1
  74. package/packages/omo-codex/plugin/hooks/stop-checking-ulw-loop-resume.json +1 -1
  75. package/packages/omo-codex/plugin/hooks/subagent-stop-checking-ulw-execute-continuation.json +1 -1
  76. package/packages/omo-codex/plugin/hooks/subagent-stop-verifying-lazycodex-executor-evidence.json +1 -1
  77. package/packages/omo-codex/plugin/hooks/user-prompt-submit-checking-ultrawork-trigger.json +1 -1
  78. package/packages/omo-codex/plugin/hooks/user-prompt-submit-checking-ulw-loop-steering.json +1 -1
  79. package/packages/omo-codex/plugin/hooks/user-prompt-submit-loading-project-rules.json +1 -1
  80. package/packages/omo-codex/plugin/package-lock.json +13 -13
  81. package/packages/omo-codex/plugin/package.json +1 -1
  82. package/packages/omo-codex/plugin/skills/data-scientist/SKILL.md +99 -239
  83. package/packages/omo-codex/plugin/skills/data-scientist/references/execution-surfaces.md +91 -0
  84. package/packages/omo-codex/plugin/skills/data-scientist/references/placement.md +74 -0
  85. package/packages/omo-codex/plugin/skills/data-scientist/references/polars-lane.md +95 -0
  86. package/packages/omo-codex/plugin/skills/data-scientist/references/uv-setup.md +1 -1
  87. package/packages/omo-codex/plugin/skills/data-scientist/references/visualization.md +64 -0
  88. package/packages/omo-codex/plugin/skills/data-scientist/scripts/ensure-js-deps.sh +28 -0
  89. package/packages/omo-codex/plugin/skills/data-scientist/scripts/ensure-py-deps.sh +37 -0
  90. package/packages/omo-codex/plugin/skills/ulw-research/SKILL.md +3 -1
  91. package/packages/omo-codex/scripts/install-dist/install-local.mjs +2 -2
  92. package/packages/shared-skills/skills/data-scientist/SKILL.md +99 -239
  93. package/packages/shared-skills/skills/data-scientist/references/execution-surfaces.md +91 -0
  94. package/packages/shared-skills/skills/data-scientist/references/placement.md +74 -0
  95. package/packages/shared-skills/skills/data-scientist/references/polars-lane.md +95 -0
  96. package/packages/shared-skills/skills/data-scientist/references/uv-setup.md +1 -1
  97. package/packages/shared-skills/skills/data-scientist/references/visualization.md +64 -0
  98. package/packages/shared-skills/skills/data-scientist/scripts/ensure-js-deps.sh +28 -0
  99. package/packages/shared-skills/skills/data-scientist/scripts/ensure-py-deps.sh +37 -0
  100. package/packages/shared-skills/skills/ulw-research/SKILL.md +3 -1
  101. package/dist/skills/data-scientist/references/common-scenarios.md +0 -176
  102. package/dist/skills/data-scientist/references/execution-templates.md +0 -197
  103. package/dist/skills/data-scientist/references/integration-patterns.md +0 -153
  104. package/dist/skills/data-scientist/references/performance-benchmarks.md +0 -37
  105. package/packages/omo-codex/plugin/skills/data-scientist/references/common-scenarios.md +0 -176
  106. package/packages/omo-codex/plugin/skills/data-scientist/references/execution-templates.md +0 -197
  107. package/packages/omo-codex/plugin/skills/data-scientist/references/integration-patterns.md +0 -153
  108. package/packages/omo-codex/plugin/skills/data-scientist/references/performance-benchmarks.md +0 -37
  109. package/packages/shared-skills/skills/data-scientist/references/common-scenarios.md +0 -176
  110. package/packages/shared-skills/skills/data-scientist/references/execution-templates.md +0 -197
  111. package/packages/shared-skills/skills/data-scientist/references/integration-patterns.md +0 -153
  112. package/packages/shared-skills/skills/data-scientist/references/performance-benchmarks.md +0 -37
@@ -0,0 +1,95 @@
1
+ # Polars lane (resident Python kernel)
2
+
3
+ When the work is DataFrame-shaped, Polars is the right engine — and it runs in the resident
4
+ Python kernel by default. Kernels rarely ship polars/pyarrow preinstalled, so inject them
5
+ once per session; the install lands in a user cache keyed to the kernel's interpreter, and
6
+ the interpreter itself is never mutated (run with the skill directory as cwd, or spell out
7
+ the script's absolute path):
8
+
9
+ ```python
10
+ import subprocess, sys
11
+ site = subprocess.run(["bash", "scripts/ensure-py-deps.sh", sys.executable],
12
+ capture_output=True, text=True, check=True).stdout.strip()
13
+ sys.path.insert(0, site)
14
+ import polars as pl
15
+ ```
16
+
17
+ After this, Polars lives across cells like every other resident engine: lazy frames,
18
+ intermediate results, and the DuckDB handoff all persist with no per-call process cost.
19
+
20
+ ## When Polars wins over DuckDB SQL
21
+
22
+ - Expression-chain transforms: many derived columns, per-column conditional logic, string
23
+ pipelines — `with_columns` chains read and optimize better than nested SQL SELECTs.
24
+ - Reshapes: `unpivot`/`pivot` beat SQL gymnastics.
25
+ - Larger-than-RAM pipelines: the streaming engine executes lazy plans in chunks.
26
+ - Window-heavy feature engineering with `over()`.
27
+
28
+ SQL-shaped work (joins, aggregation, ad-hoc questions) stays in DuckDB; mixed pipelines hand
29
+ off zero-copy (below) instead of forcing one engine to do everything.
30
+
31
+ ## Current API (1.x) — older spellings fail or warn
32
+
33
+ Training data is full of the pre-1.0 API. Current names:
34
+
35
+ | Use | Not |
36
+ | --- | --- |
37
+ | `pl.scan_csv` / `pl.scan_parquet` + `.collect()` | eager `read_*` on big files |
38
+ | `.group_by(...)` | `.groupby(...)` |
39
+ | `pl.len()` | `pl.count()` |
40
+ | `.collect(engine="streaming")` | `.collect(streaming=True)` |
41
+ | `.unpivot(...)` | `.melt(...)` |
42
+
43
+ Lazy first: `scan_*` builds a plan, pushes filters and projections down to the file read, and
44
+ executes once at `.collect()`. Eager `read_*` is for small files mutated interactively.
45
+
46
+ ```python
47
+ out = (pl.scan_csv("data.csv")
48
+ .filter(pl.col("value") > 100)
49
+ .group_by("category")
50
+ .agg(pl.col("value").sum().alias("total"), pl.len().alias("n"))
51
+ .sort("total", descending=True)
52
+ .collect())
53
+ ```
54
+
55
+ ## Zero-copy handoff with DuckDB
56
+
57
+ Both engines speak Arrow, so mixed pipelines pay no serialization cost — all in-kernel:
58
+
59
+ ```python
60
+ import duckdb
61
+ df = duckdb.sql("SELECT * FROM 'orders.csv' o JOIN 'items.csv' i USING (id)").pl()
62
+ shaped = df.with_columns((pl.col("qty") * pl.col("price")).alias("rev"))
63
+ duckdb.register("shaped", shaped)
64
+ out = duckdb.sql("SELECT category, SUM(rev) AS total FROM shaped GROUP BY 1").pl()
65
+ ```
66
+
67
+ - `.pl()` requires pyarrow — the injection above provides it; without it, it raises
68
+ `ModuleNotFoundError`.
69
+ - Never `.df()`: it requires pandas (raising without it), and pandas is banned and absent.
70
+
71
+ ## Streaming past RAM
72
+
73
+ ```python
74
+ out = (pl.scan_parquet("huge.parquet")
75
+ .filter(pl.col("status") == "active")
76
+ .group_by("region").agg(pl.len())
77
+ .collect(engine="streaming"))
78
+ ```
79
+
80
+ Streaming executes lazy plans only — keep the plan lazy end-to-end, with no intermediate
81
+ `.collect()` breaking it into eager pieces.
82
+
83
+ ## Kernel-less fallback (uv one-shot)
84
+
85
+ On a harness with no persistent kernel, the same code runs as one-shots — batch several
86
+ questions per process, since each invocation pays spawn plus imports:
87
+
88
+ ```bash
89
+ uv run --with duckdb --with polars --with pyarrow python -c "
90
+ import duckdb
91
+ import polars as pl
92
+ df = duckdb.sql(\"SELECT * FROM 'data.csv'\").pl()
93
+ print(df.group_by('category').agg(pl.len()).sort('category'))
94
+ "
95
+ ```
@@ -1,6 +1,6 @@
1
1
  # uv Setup — Per-Platform
2
2
 
3
- This skill runs every data operation through `uv run --with ...`. If `uv --version` fails, set uv up with the automated scripts or the manual commands below, then verify.
3
+ This skill's uv lane (kernel-less harnesses, isolated one-shots) runs through `uv run --with ...`, and `scripts/ensure-py-deps.sh` uses uv as its installer. If `uv --version` fails, set uv up with the automated scripts or the manual commands below, then verify.
4
4
 
5
5
  ## Automated (recommended)
6
6
 
@@ -0,0 +1,64 @@
1
+ # Visualization
2
+
3
+ A chart exists to answer a question at a glance. Render it with matplotlib (resident in most
4
+ Python kernels; `uv run --with matplotlib` otherwise), then look at it before delivering —
5
+ a chart nobody inspected is not evidence.
6
+
7
+ ## When to chart
8
+
9
+ Chart when the user asked for one, and default to charting when the answer is a shape prose
10
+ cannot carry: a trend over time, a distribution, a comparison across many categories, a
11
+ relationship between variables. Skip the chart when a number or a five-row table answers the
12
+ question — decoration dilutes the answer.
13
+
14
+ ## Chart type follows the question
15
+
16
+ | Question shape | Chart |
17
+ | --- | --- |
18
+ | How did X change over time? | line, datetime x-axis |
19
+ | Which categories are biggest? | horizontal bar, sorted by value |
20
+ | How is X distributed? | histogram (tune bin count) or box plot per group |
21
+ | Is X related to Y? | scatter; add a trend line only when it aids the eye |
22
+ | Composition of a whole? | stacked or 100% bar — pie only for four or fewer slices |
23
+ | Many series over time? | small multiples over one spaghetti chart |
24
+
25
+ ## Quality bar — every chart
26
+
27
+ - Title states the finding ("Seoul overtook Busan in March"), not the dataset name.
28
+ - Axis labels carry units. Tick density stays readable: `fig.autofmt_xdate()` for dates,
29
+ rotate or abbreviate long category names.
30
+ - Size for the medium: inline chat reads well around `figsize=(10, 6)` at default dpi;
31
+ documents want `dpi=150` or more at export.
32
+ - `tight_layout()` (or `constrained_layout=True`) before saving — clipped labels are the
33
+ most common chart defect.
34
+ - Few series: label lines directly, or keep the legend inside empty plot space. Many
35
+ series: gray the context, color only the series that answers the question.
36
+ - The default color cycle is fine; avoid rainbow palettes and 3D. Sort categorical bars by
37
+ value, never alphabetically.
38
+
39
+ ## CJK and other non-Latin text
40
+
41
+ Matplotlib's default font renders CJK as empty boxes (tofu). Set a fallback before plotting
42
+ whenever any label or title contains CJK:
43
+
44
+ ```python
45
+ import platform
46
+ import matplotlib
47
+ cjk = {"Darwin": "AppleGothic", "Windows": "Malgun Gothic"}.get(platform.system(), "Noto Sans CJK KR")
48
+ matplotlib.rcParams["font.family"] = [cjk, "DejaVu Sans"]
49
+ matplotlib.rcParams["axes.unicode_minus"] = False # keeps the minus sign rendering
50
+ ```
51
+
52
+ ## Output contract
53
+
54
+ 1. Save a PNG next to the work: `plt.savefig(path, dpi=150, bbox_inches="tight")`.
55
+ 2. Also render inline when the surface displays rich output (kernels usually do).
56
+ 3. Report the file path together with the answer.
57
+
58
+ ## Visual QA — mandatory
59
+
60
+ Open the produced image — kernel display, or the harness's image-reading surface — and
61
+ check four things: labels readable and unclipped, no tofu or mojibake, nothing overlapping,
62
+ and the chart actually shows the finding the title claims. A failed check means fix and
63
+ re-render, not ship with a caveat. This one pass catches nearly every chart defect;
64
+ skipping it is how tofu titles reach users.
@@ -0,0 +1,28 @@
1
+ #!/usr/bin/env bash
2
+ # Install @duckdb/node-api into a user-level cache (outside any repo) and print the
3
+ # absolute import path as the ONLY stdout line. Idempotent: re-runs reuse the install.
4
+ set -euo pipefail
5
+
6
+ log() { printf '[ensure-js-deps] %s\n' "$*" >&2; }
7
+
8
+ CACHE_DIR="${OMO_DATA_SCIENTIST_CACHE:-$HOME/.cache/omo-data-scientist}"
9
+ IMPORT_PATH="$CACHE_DIR/node_modules/@duckdb/node-api/lib/index.js"
10
+
11
+ if ! command -v bun >/dev/null 2>&1; then
12
+ log "bun is required (https://bun.sh); install it, or use the uv lane instead."
13
+ exit 1
14
+ fi
15
+
16
+ if [ ! -f "$IMPORT_PATH" ]; then
17
+ log "installing @duckdb/node-api into $CACHE_DIR"
18
+ mkdir -p "$CACHE_DIR"
19
+ [ -f "$CACHE_DIR/package.json" ] || printf '{"name":"omo-data-scientist-cache","private":true}\n' > "$CACHE_DIR/package.json"
20
+ (cd "$CACHE_DIR" && bun add @duckdb/node-api 1>&2)
21
+ fi
22
+
23
+ if [ ! -f "$IMPORT_PATH" ]; then
24
+ log "install finished but $IMPORT_PATH is missing; inspect $CACHE_DIR"
25
+ exit 1
26
+ fi
27
+
28
+ printf '%s\n' "$IMPORT_PATH"
@@ -0,0 +1,37 @@
1
+ #!/usr/bin/env bash
2
+ # Install polars + pyarrow for a given Python interpreter into a user-level cache
3
+ # (never mutating the interpreter itself) and print the site directory as the ONLY
4
+ # stdout line. Idempotent: re-runs reuse the install. arg1 = python executable
5
+ # (default: python3); pass the kernel's sys.executable for kernel use.
6
+ set -euo pipefail
7
+
8
+ log() { printf '[ensure-py-deps] %s\n' "$*" >&2; }
9
+
10
+ PYTHON_BIN="${1:-python3}"
11
+
12
+ if ! command -v uv >/dev/null 2>&1; then
13
+ log "uv is required (see references/uv-setup.md); install it first."
14
+ exit 1
15
+ fi
16
+ if ! command -v "$PYTHON_BIN" >/dev/null 2>&1 && [ ! -x "$PYTHON_BIN" ]; then
17
+ log "python executable not found: $PYTHON_BIN"
18
+ exit 1
19
+ fi
20
+
21
+ TAG="$("$PYTHON_BIN" -c 'import sys; print(f"cp{sys.version_info[0]}{sys.version_info[1]}")')" \
22
+ || { log "not a working python interpreter: $PYTHON_BIN"; exit 1; }
23
+ CACHE_DIR="${OMO_DATA_SCIENTIST_CACHE:-$HOME/.cache/omo-data-scientist}"
24
+ SITE_DIR="$CACHE_DIR/py-$TAG"
25
+
26
+ if [ ! -d "$SITE_DIR/polars" ] || [ ! -d "$SITE_DIR/pyarrow" ]; then
27
+ log "installing polars + pyarrow for $TAG into $SITE_DIR"
28
+ mkdir -p "$SITE_DIR"
29
+ uv pip install --python "$PYTHON_BIN" --target "$SITE_DIR" polars pyarrow 1>&2
30
+ fi
31
+
32
+ if [ ! -d "$SITE_DIR/polars" ]; then
33
+ log "install finished but $SITE_DIR/polars is missing; inspect $SITE_DIR"
34
+ exit 1
35
+ fi
36
+
37
+ printf '%s\n' "$SITE_DIR"
@@ -161,7 +161,9 @@ Record the answer in the journal; Phase 5 opens by turning it into `design-spec.
161
161
 
162
162
  ## Phase 1 — Saturation wave
163
163
 
164
- Launch the entire first wave in one turn — every axis at once, as team members if you formed a team, else as background workers. Sequential launches and "start with one and see" defeat the mode.
164
+ **When the user asked for MASS research, the wave is sized by the topic's angles, not by the roster ceiling.** "mass ulw research", "mulw research", "ulw mass research" — in any languageorder over-collection that a team of 8 cannot produce. Where the harness has a dependency-graph surface (the `mass-ulw` skill and its `references/planning.md`), run collection through it instead: a 60+ node opening wave covering every angle the topic has, routed across the whole difficulty ladder in one graph — mechanical sweeps and per-item harvest batches on the cheapest tier, judgment-shaped angles a step up, cross-territory angles a step above that, and the deepest tier reserved for genuinely hairy contradictions. Each wave's EXPAND leads define the next wave's nodes, and the synthesis reduces through several parallel architect-tier nodes into ONE architect-tier reducer (the strongest reasoning tier substitutes wherever no architect tier exists). Absent that surface, hold the same shape with background workers in batched waves. Everything else in this skill still binds: the format gate, the journal, the claim graph, the convergence rules, and the delivery gates.
165
+
166
+ Otherwise launch the entire first wave in one turn — every axis at once, as team members if you formed a team, else as background workers. Sequential launches and "start with one and see" defeat the mode.
165
167
 
166
168
  Scaling floor — more angles always justify more workers:
167
169
 
@@ -1,5 +1,5 @@
1
1
  #!/usr/bin/env node
2
- // omo-codex-install:819e258f7485f9ccdcbb64a54ac0097bf81cd8e2980d7f907017f224b1f99b98:3a0f0cc479b76911cc517d857bad53dceaaf7421ac945a5476ac1a5112c0bcf5
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+ // omo-codex-install:819e258f7485f9ccdcbb64a54ac0097bf81cd8e2980d7f907017f224b1f99b98:c7cf2301eb62bcb863c4e5844198424f235d9a88b5621bbf03436d1ef66c3491
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  var __defProp = Object.defineProperty;
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  var __returnValue = (v) => v;
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  function __exportSetter(name, newValue) {
@@ -7977,7 +7977,7 @@ var package_default;
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  var init_package = __esm(() => {
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  package_default = {
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  name: "@oh-my-opencode/omo-codex",
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- version: "5.0.0-beta.26",
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+ version: "5.0.0-beta.28",
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  type: "module",
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  private: true,
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  description: "Codex harness adapter for oh-my-openagent. Vendored Codex plugin namespace (omo) + TypeScript installer + telemetry.",
@@ -1,243 +1,103 @@
1
1
  ---
2
2
  name: data-scientist
3
- description: "Expert data processing specialist with intelligent DuckDB/Polars selection for maximum performance. Always includes numpy, never uses pandas, runs everything through uv. Triggers: 'analyze the data', 'analyze this file', 'what is in this CSV/parquet/json', 'summarize this', 'group by', 'filter rows', 'sort by', 'join these files', 'merge datasets', 'time series trend', 'last 30 days data', 'compare yesterday and today', 'distribution/histogram', 'correlation', 'clean duplicates', 'handle missing values', 'dataset larger than RAM', 'SQL query on files', 'DataFrame operations', 'chart/plot this data', DuckDB vs Polars selection, quick data exploration CLI. NOT for plain text/code inspection, configs, or tiny inline math."
3
+ description: "Expert data processing with a hybrid engine strategy: resident-kernel engines first - DuckDB plus a resident Python stack (Polars/numpy/matplotlib) in persistent js/py eval kernels where the harness has them, bun/uv one-shots elsewhere - and per-action placement judgment (in-memory vs streaming vs remote-in-place). Triggers: 'analyze the data', 'what is in this CSV/parquet/json', 'summarize this', 'group by', 'filter rows', 'sort by', 'join these files', 'merge datasets', 'time series trend', 'compare yesterday and today', 'distribution/histogram', 'correlation', 'clean duplicates', 'handle missing values', 'dataset larger than RAM', 'SQL query on files', 'DataFrame operations', 'chart/plot this data', DuckDB vs Polars selection, quick data exploration CLI. NOT for plain text/code inspection, configs, or tiny inline math."
4
4
  ---
5
5
 
6
- # Data Scientist: High-Performance Data Processing Expert
7
-
8
- ## Role & Expertise
9
-
10
- Performance-obsessed data scientist with expertise in:
11
- - Intelligent tool selection: DuckDB vs Polars based on operation characteristics
12
- - Zero-copy data interchange via Apache Arrow
13
- - Memory-efficient processing for datasets exceeding RAM
14
- - SQL and DataFrame API mastery for analytical workloads
15
-
16
- ## Environment Setup
17
-
18
- Everything runs through **uv**. If `uv` is not on PATH, set it up first — pick the path that matches the system and run it, no manual guesswork:
19
-
20
- ```bash
21
- bash scripts/setup-uv.sh # macOS / Linux / WSL / Git Bash auto-detects OS + arch, installs or updates uv to latest
22
- ```
23
-
24
- ```powershell
25
- powershell -ExecutionPolicy Bypass -File scripts/setup-uv.ps1 # native Windows — installs or updates uv to latest
26
- ```
27
-
28
- Both scripts detect the platform, install uv when missing (official installer first, Homebrew/winget as fallback), upgrade it when present (`uv self update`), put it on PATH for the current shell, and verify with `uv --version`. The full per-platform matrix, PATH notes, and CI usage live in [references/uv-setup.md](references/uv-setup.md). Verify: `uv --version`.
29
-
30
- ## Core Principles
31
-
32
- ### ABSOLUTE RULES
33
-
34
- 1. **ALWAYS include numpy** in all data processing operations (`uv run --with numpy ...`)
35
- 2. **NEVER use pandas** - Polars and DuckDB beat it decisively on every operation; the entire skill assumes pandas is absent
36
- 3. **ALWAYS use Python via `uv run`** for calculations and data processing
37
- 4. **Intelligent tool selection**: Choose DuckDB or Polars based on operation types, NOT arbitrarily
38
- 5. **Zero-copy conversions**: hand data across DuckDB and Polars through Arrow `duckdb.sql(...).pl()`. Never call `.df()` (returns a pandas frame; crashes without pandas). Keep `pyarrow` in the package set or `.pl()` raises `ModuleNotFoundError`
39
- 6. **Lazy evaluation**: Prefer `scan_csv`/`scan_parquet` and `.collect()` only when needed
40
- 7. **Direct file queries**: Let DuckDB query files directly instead of loading to memory when possible
41
-
42
- ### Standard Package Pattern
43
-
44
- ```bash
45
- # Default for data tasks (numpy + pyarrow are mandatory parts of the set)
46
- uv run --with numpy --with duckdb --with polars --with pyarrow python -c "{code}"
47
-
48
- # With visualization (RECOMMENDED for most analysis requests)
49
- uv run --with numpy --with duckdb --with polars --with pyarrow --with matplotlib python -c "{code}"
50
-
51
- # Pure Polars
52
- uv run --with numpy --with polars python -c "{code}"
53
-
54
- # Pure DuckDB (with the Arrow handoff available)
55
- uv run --with numpy --with duckdb --with pyarrow python -c "{code}"
56
- ```
57
-
58
- **When to include matplotlib:**
59
- - User requests visualization: "graph", "chart", "plot", "show me"
60
- - Exploratory data analysis (EDA): "analyze", "trends", "patterns"
61
- - Time-series analysis: "over time", "daily", "trends"
62
- - Distribution analysis: "distribution", "histogram", "statistics"
63
- - Comparison tasks: "compare", visual comparison implied
64
- - **Default to including matplotlib** when in doubt - overhead is minimal
65
-
66
- ## Tool Selection Logic
67
-
68
- ### Decision Tree (Apply in Order)
69
-
70
- 1. **Is it a `.duckdb` file?** **USE DUCKDB** (native format, optimal performance)
71
- 2. **Simple one-off query without needing full data in memory?** → **USE DUCKDB** (direct file query, zero memory load)
72
- 3. **Very heavy complex SQL query (multi-table joins, window functions)?** → **USE DUCKDB** (superior SQL optimizer)
73
- 4. **Main operation is FILTERING?** → **USE POLARS** (typically the fastest by a wide margin — see benchmarks)
74
- 5. **Main operation is SORTING?** → **USE POLARS** (typically the fastest)
75
- 6. **Complex SQL JOINS needed?** → **USE DUCKDB** (stronger join engine, more join types)
76
- 7. **Heavy GROUP BY AGGREGATIONS?** → **USE DUCKDB** (typically faster on large datasets)
77
- 8. **Window functions with partitioning?** **POLARS** (typically faster)
78
- 9. **Complex TRANSFORMATIONS (pivot, melt, string ops)?** **USE POLARS**
79
- 10. **Dataset larger than available RAM?** **USE POLARS** (streaming support) or **DUCKDB** (out-of-core)
80
- 11. **Mixed operations?** **USE HYBRID APPROACH** (leverage strengths of both)
81
-
82
- ### Quick Reference
83
-
84
- ```
85
- Simple query DuckDB
86
- Heavy complex query DuckDB
87
- Filter Polars
88
- Sort → Polars
89
- Join → DuckDB
90
- Aggregate → DuckDB
91
- Window Polars
92
- Transform Polars
93
- Too large for RAM Polars streaming
94
- Mixed operations Hybrid
95
- ```
96
-
97
- The exact multipliers these heuristics distill (with sources and caveats — routing heuristics, not guarantees) live in [performance-benchmarks.md](references/performance-benchmarks.md).
98
-
99
- ## Essential Patterns
100
-
101
- ### DuckDB Direct File Query
102
-
103
- ```python
104
- import duckdb
105
- # Query file directly - no memory load
106
- result = duckdb.sql("""
107
- SELECT category, SUM(amount) as total
108
- FROM 'data.csv'
109
- GROUP BY category
110
- """).pl() # .pl() -> Polars via Arrow. Requires pyarrow. Never .df() (pandas).
111
- ```
112
-
113
- ### Polars Lazy Evaluation
114
-
115
- ```python
116
- import polars as pl
117
- # Lazy scan - optimizes and executes once
118
- result = (
119
- pl.scan_csv('data.csv')
120
- .filter(pl.col('value') > 100)
121
- .sort('value', descending=True)
122
- .collect()
123
- )
124
- ```
125
-
126
- ### Zero-Copy DuckDB → Polars
127
-
128
- ```python
129
- import duckdb
130
- # Direct conversion via Arrow (pyarrow required in the package set)
131
- df_polars = duckdb.sql("SELECT * FROM 'data.csv'").pl()
132
- ```
133
-
134
- ### Hybrid Approach
135
-
136
- ```python
137
- import duckdb
138
- import polars as pl
139
-
140
- # Phase 1: DuckDB for joins
141
- joined = duckdb.sql(
142
- "SELECT * FROM 'orders.csv' o "
143
- "JOIN 'customers.csv' c ON o.customer_id = c.customer_id"
144
- ).pl()
145
-
146
- # Phase 2: Polars for filtering
147
- filtered = joined.filter(pl.col('amount') > 100)
148
-
149
- # Phase 3: Back to DuckDB for aggregation
150
- duckdb.register('filtered_data', filtered)
151
- final = duckdb.sql('SELECT category, SUM(amount) FROM filtered_data GROUP BY category').pl()
152
- ```
153
-
154
- ## Quick Query CLI
155
-
156
- For ad-hoc data exploration, use the built-in query runner:
157
-
158
- ```bash
159
- # SQL query (uses DuckDB)
160
- uv run scripts/quick-query.py data.csv "SELECT category, COUNT(*) FROM data GROUP BY category"
161
-
162
- # Filter expression — Polars SQL syntax, e.g. "amount > 100" (NOT Python: never passes through eval)
163
- uv run scripts/quick-query.py data.csv --filter "amount > 100"
164
-
165
- # Auto-describe (schema + stats)
166
- uv run scripts/quick-query.py data.parquet --describe
167
- ```
168
-
169
- Supports CSV, Parquet, JSON, NDJSON. Cross-platform (macOS, Linux, Windows). Excel files are not read directly — export to CSV or Parquet first.
170
-
171
- ## Reference Documentation
172
-
173
- For detailed guidance, consult these reference files:
174
-
175
- - **Environment setup per platform**: See [uv-setup.md](references/uv-setup.md) — install/update uv on macOS, Linux, Windows, WSL, CI; PATH fixes; `scripts/setup-uv.sh` / `scripts/setup-uv.ps1` automate it.
176
- - **Performance benchmarks and operation detection**: See [performance-benchmarks.md](references/performance-benchmarks.md)
177
- - **Integration patterns and best practices**: See [integration-patterns.md](references/integration-patterns.md)
178
- - **Execution templates**: See [execution-templates.md](references/execution-templates.md)
179
- - **Common scenarios**: See [common-scenarios.md](references/common-scenarios.md)
180
-
181
- ## Quality Assurance Process
182
-
183
- ### Before Execution
184
- 1. **Analyze request** → Detect operation types (filter, join, aggregate, etc.)
185
- 2. **Select optimal tool** → Apply decision tree based on detected operations
186
- 3. **Verify approach** → Confirm tool selection matches the benchmark heuristics
187
- 4. **Check package list** → Ensure numpy AND pyarrow are included
188
-
189
- ### During Execution
190
- 1. **Use lazy evaluation** when possible (Polars `scan_*`, DuckDB direct queries)
191
- 2. **Monitor for errors** and have fallback strategy ready
192
- 3. **Provide progress updates** for long operations
193
-
194
- ### After Execution
195
- 1. **Report performance** → Show processing time and row counts
196
- 2. **Validate results** → Confirm output matches expectations
197
- 3. **Document tool choice** → Explain why specific tool was selected
198
-
199
- ## Activation Context
200
-
201
- **Automatic activation triggers:**
202
-
203
- ### Exploratory Questions
204
- - "Analyze the data" / "What's in the data" / "What's in this file"
205
- - "Show me the data" / "Take a look at this file" / "Check the file contents"
206
-
207
- ### Temporal/Historical Analysis
208
- - "What happened in the past N days?" / "How's last week's data?"
209
- - "What's the trend for the last 30 days?" / "Compare yesterday and today"
210
-
211
- ### Aggregation/Summary Requests
212
- - "Summarize this" / "What's the total?" / "What's the average?"
213
- - "Show by category" / "Show statistics" / "How many?"
214
-
215
- ### Filtering/Search Patterns
216
- - "Show only above 100" / "Find specific conditions" / "Top 10"
217
-
218
- ### Comparison/Correlation
219
- - "Compare A and B" / "What's the difference?" / "Is there a correlation?" / "Merge two files"
220
-
221
- ### Transformation/Cleaning
222
- - "Clean this up" / "Remove duplicates" / "Handle missing values" / "Convert format"
223
-
224
- ### Technical Patterns
225
- - Working with CSV, Parquet, JSON, NDJSON, or `.duckdb` files
226
- - File paths ending in `.csv`, `.parquet`, `.json`, `.jsonl`, `.ndjson`, `.tsv`, `.duckdb`
227
- - Requests involving calculations or aggregations
228
- - Joining, filtering, sorting, or transforming datasets
229
- - Processing large datasets that may exceed memory
230
- - Comparing or analyzing data from multiple sources
231
- - Performance-critical data operations
232
- - SQL queries or DataFrame operations mentioned
233
-
234
- ### When NOT to Activate
235
- - Simple file reading for text/code inspection (use the harness's file-read surface)
236
- - Non-data files (images, videos, binaries)
237
- - Configuration files (YAML, TOML, JSON configs) unless specifically for data analysis
238
- - Small inline calculations (run them directly)
239
- - Excel files — convert to CSV/Parquet first
240
-
241
- ---
242
-
243
- **Core execution principle:** Always apply intelligent tool selection based on operation characteristics, never use pandas, and always include numpy and pyarrow in the execution environment.
6
+ # Data Scientist: Hybrid-Engine Data Processing
7
+
8
+ Answer data questions through the cheapest engine and surface that can prove the answer, and
9
+ decide where the computation should live before touching the data.
10
+
11
+ ## Execution surfaces: resident kernel first
12
+
13
+ A persistent REPL/eval kernel (many harnesses expose one for JavaScript and Python) is the
14
+ default surface. Reason: each one-shot process pays roughly a second of spawn-plus-import
15
+ overhead and re-scans the input file, while a resident connection amortizes both — after a
16
+ one-time load, repeat queries return in milliseconds. Exploration is repeat queries, so this
17
+ difference dominates the session.
18
+
19
+ 1. **JavaScript kernel (Bun)**: run `scripts/ensure-js-deps.sh` once; it prints the absolute
20
+ import path for `@duckdb/node-api`. Dynamic-import it, connect once, query across cells.
21
+ 2. **Python kernel**: the default surface for Python work. duckdb/numpy/matplotlib are
22
+ typically resident; Polars and pyarrow come from `scripts/ensure-py-deps.sh`, which
23
+ installs them once into a user cache keyed to the kernel's interpreter —
24
+ `sys.path.insert` the printed directory and import. The interpreter itself is never
25
+ mutated.
26
+ 3. **uv lane** (`uv run --with ...`): isolation for a heavy or crash-prone one-shot that
27
+ should not take the kernel down.
28
+ 4. **No kernel** (plain-shell harness): the same engines as one-shots `bun -e` for
29
+ DuckDB-js, `uv run python -c` for the Python stack — batching several questions per
30
+ process.
31
+
32
+ Per-surface patterns and pitfalls: read `references/execution-surfaces.md` before first use.
33
+
34
+ ## Engine selection
35
+
36
+ - **DuckDB** for SQL-shaped work: direct file queries, joins, aggregation, subqueries,
37
+ window functions. It queries CSV/Parquet/JSON in place without loading, spills to disk
38
+ past its memory limit, and reads remote files with the same syntax.
39
+ - **Polars** when the pipeline is DataFrame-shaped: expression-chain transforms, reshapes,
40
+ streaming datasets past RAM resident in the Python kernel via `ensure-py-deps.sh`.
41
+ Read `references/polars-lane.md` — the current 1.x API differs from widely-memorized
42
+ older spellings.
43
+ - **numpy** when numeric work goes beyond SQL/DataFrame aggregation: statistical tests,
44
+ linear algebra, FFT, random sampling.
45
+ - **matplotlib** for every chart read `references/visualization.md` first; it carries the
46
+ quality bar and a mandatory visual check.
47
+
48
+ Performance folklore ("X is Nx faster at filtering") varies with data shape, cardinality,
49
+ and hardware. When the engine choice materially matters, measure on the actual data instead
50
+ of trusting remembered multipliers.
51
+
52
+ ## Placement: decide where the computation lives
53
+
54
+ Probe before you compute — one cell: file size, free RAM, and (when unclear) a row count via
55
+ a direct scan. Then place the work:
56
+
57
+ - **Load into memory** when the working set stays within roughly a quarter of free RAM AND
58
+ the session will run repeated queries: `CREATE TABLE t AS SELECT ...` (or a collected
59
+ DataFrame) once, then iterate. One scan up front converts every later query from a file
60
+ re-scan into milliseconds.
61
+ - **Query in place / stream** when the question is single-pass, or the data exceeds RAM:
62
+ DuckDB reads files directly (`FROM 'data.csv'`); past RAM, cap DuckDB's memory and let it
63
+ spill, or use Polars' streaming engine in the Python kernel. NEVER load a larger-than-RAM
64
+ dataset fully into memory swapping stalls the whole machine, while streaming merely
65
+ takes longer.
66
+ - **Query remotely, in place** when the data lives elsewhere: DuckDB reads http(s)/S3
67
+ Parquet and CSV with projection and predicate pushdown, so fetch the columns and rows the
68
+ question needs, never the whole file. When data sits on another machine you can execute
69
+ on, ship the query to the data and return the small result. Rule: result much smaller
70
+ than data move the query; repeated local iteration planned move a pruned copy of the
71
+ data once.
72
+
73
+ Sizing heuristics and recipes: `references/placement.md`.
74
+
75
+ ## Hard rules
76
+
77
+ - **NEVER use pandas.** DuckDB and Polars beat it decisively on every workload this skill
78
+ covers, and the environments this skill assumes do not ship it — `.df()` on a DuckDB
79
+ result raises unless pandas is installed; convert with `.pl()` via Arrow instead.
80
+ - Excel files are not read directly: export to CSV or Parquet first.
81
+
82
+ ## Output contract
83
+
84
+ Answer the question; report row counts and timing for anything heavy; then stop — no bonus
85
+ charts, no extra exploration passes beyond what the question needed. Chart when asked, or
86
+ when the answer is a shape (trend, distribution, comparison) that prose cannot carry — then
87
+ follow `references/visualization.md` including its visual QA step.
88
+
89
+ ## References
90
+
91
+ | Read | When |
92
+ | --- | --- |
93
+ | `references/execution-surfaces.md` | before the first query on any surface: kernel patterns, one-shot recipes, escalation rules |
94
+ | `references/polars-lane.md` | DataFrame-shaped pipeline or data past RAM: current API, Arrow handoff, package sets |
95
+ | `references/placement.md` | before heavy or remote work: sizing probe, memory limits, remote reads |
96
+ | `references/visualization.md` | before any chart: type selection, quality bar, CJK fonts, visual QA |
97
+ | `references/uv-setup.md` | uv missing or broken on this machine |
98
+
99
+ ## CLI fallback
100
+
101
+ When no kernel or REPL surface exists, `uv run scripts/quick-query.py <file> [SQL]`
102
+ (`--filter <polars-sql-expr>`, `--describe`) answers ad-hoc questions with zero code.
103
+ Supports CSV, Parquet, JSON, NDJSON.