oh-my-opencode 5.0.0-beta.26 → 5.0.0-beta.28

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Files changed (112) hide show
  1. package/dist/cli/config-manager/parse-opencode-config-file.d.ts +2 -1
  2. package/dist/cli/doctor/checks/system-plugin.d.ts +4 -3
  3. package/dist/cli/index.js +59 -45
  4. package/dist/cli-node/index.js +82 -45
  5. package/dist/hooks/todo-continuation-enforcer/types.d.ts +1 -0
  6. package/dist/index.js +53 -28
  7. package/dist/shared/index.d.ts +1 -0
  8. package/dist/shared/legacy-plugin-warning.d.ts +2 -1
  9. package/dist/shared/plugin-entry-migrator.d.ts +4 -3
  10. package/dist/shared/plugin-entry-shape.d.ts +6 -0
  11. package/dist/skills/data-scientist/SKILL.md +99 -239
  12. package/dist/skills/data-scientist/references/execution-surfaces.md +91 -0
  13. package/dist/skills/data-scientist/references/placement.md +74 -0
  14. package/dist/skills/data-scientist/references/polars-lane.md +95 -0
  15. package/dist/skills/data-scientist/references/uv-setup.md +1 -1
  16. package/dist/skills/data-scientist/references/visualization.md +64 -0
  17. package/dist/skills/data-scientist/scripts/ensure-js-deps.sh +28 -0
  18. package/dist/skills/data-scientist/scripts/ensure-py-deps.sh +37 -0
  19. package/dist/skills/ulw-research/SKILL.md +3 -1
  20. package/dist/tui.d.ts +12 -0
  21. package/dist/tui.js +3 -3
  22. package/package.json +15 -15
  23. package/packages/lsp-core/src/request-context.test.ts +29 -0
  24. package/packages/lsp-core/src/request-context.ts +1 -1
  25. package/packages/lsp-daemon/dist/cli.js +1 -1
  26. package/packages/lsp-daemon/dist/client.js +1 -1
  27. package/packages/lsp-daemon/dist/index.js +1 -1
  28. package/packages/lsp-tools-mcp/dist/cli.js +1 -1
  29. package/packages/lsp-tools-mcp/dist/mcp.js +1 -1
  30. package/packages/lsp-tools-mcp/dist/request-context.js +1 -1
  31. package/packages/lsp-tools-mcp/dist/tools.js +1 -1
  32. package/packages/omo-codex/plugin/.codex-plugin/plugin.json +1 -1
  33. package/packages/omo-codex/plugin/components/bootstrap/hooks/hooks.json +1 -1
  34. package/packages/omo-codex/plugin/components/bootstrap/package.json +1 -1
  35. package/packages/omo-codex/plugin/components/codegraph/package.json +1 -1
  36. package/packages/omo-codex/plugin/components/comment-checker/hooks/hooks.json +1 -1
  37. package/packages/omo-codex/plugin/components/comment-checker/package.json +1 -1
  38. package/packages/omo-codex/plugin/components/git-bash/hooks/hooks.json +2 -2
  39. package/packages/omo-codex/plugin/components/git-bash/package.json +1 -1
  40. package/packages/omo-codex/plugin/components/lazycodex-executor-verify/hooks/hooks.json +1 -1
  41. package/packages/omo-codex/plugin/components/lazycodex-executor-verify/package.json +1 -1
  42. package/packages/omo-codex/plugin/components/lsp/dist/.omo-runtime-manifest.json +2 -2
  43. package/packages/omo-codex/plugin/components/lsp/hooks/hooks.json +2 -2
  44. package/packages/omo-codex/plugin/components/lsp/package.json +1 -1
  45. package/packages/omo-codex/plugin/components/rules/hooks/hooks.json +4 -4
  46. package/packages/omo-codex/plugin/components/rules/package.json +1 -1
  47. package/packages/omo-codex/plugin/components/teammode/hooks/hooks.json +1 -1
  48. package/packages/omo-codex/plugin/components/teammode/package.json +1 -1
  49. package/packages/omo-codex/plugin/components/telemetry/hooks/hooks.json +1 -1
  50. package/packages/omo-codex/plugin/components/telemetry/package.json +1 -1
  51. package/packages/omo-codex/plugin/components/ultrawork/hooks/hooks.json +1 -1
  52. package/packages/omo-codex/plugin/components/ultrawork/package.json +1 -1
  53. package/packages/omo-codex/plugin/components/ulw-execute-continuation/hooks/hooks.json +2 -2
  54. package/packages/omo-codex/plugin/components/ulw-execute-continuation/package.json +1 -1
  55. package/packages/omo-codex/plugin/components/ulw-loop/hooks/hooks.json +4 -4
  56. package/packages/omo-codex/plugin/components/ulw-loop/package.json +1 -1
  57. package/packages/omo-codex/plugin/hooks/post-compact-resetting-git-bash-mcp-reminder.json +1 -1
  58. package/packages/omo-codex/plugin/hooks/post-compact-resetting-lsp-diagnostics-cache.json +1 -1
  59. package/packages/omo-codex/plugin/hooks/post-compact-resetting-project-rule-cache.json +1 -1
  60. package/packages/omo-codex/plugin/hooks/post-tool-use-checking-codegraph-init-guidance.json +1 -1
  61. package/packages/omo-codex/plugin/hooks/post-tool-use-checking-comments.json +1 -1
  62. package/packages/omo-codex/plugin/hooks/post-tool-use-checking-lsp-diagnostics.json +1 -1
  63. package/packages/omo-codex/plugin/hooks/post-tool-use-checking-thread-title-hygiene.json +1 -1
  64. package/packages/omo-codex/plugin/hooks/post-tool-use-matching-project-rules.json +1 -1
  65. package/packages/omo-codex/plugin/hooks/pre-tool-use-enforcing-unlimited-goal-budget.json +1 -1
  66. package/packages/omo-codex/plugin/hooks/pre-tool-use-guarding-ulw-loop-spawns.json +1 -1
  67. package/packages/omo-codex/plugin/hooks/pre-tool-use-recommending-git-bash-mcp.json +1 -1
  68. package/packages/omo-codex/plugin/hooks/session-start-checking-auto-update.json +1 -1
  69. package/packages/omo-codex/plugin/hooks/session-start-checking-bootstrap-provisioning.json +1 -1
  70. package/packages/omo-codex/plugin/hooks/session-start-checking-codegraph-bootstrap.json +1 -1
  71. package/packages/omo-codex/plugin/hooks/session-start-loading-project-rules.json +1 -1
  72. package/packages/omo-codex/plugin/hooks/session-start-recording-session-telemetry.json +1 -1
  73. package/packages/omo-codex/plugin/hooks/stop-checking-ulw-execute-continuation.json +1 -1
  74. package/packages/omo-codex/plugin/hooks/stop-checking-ulw-loop-resume.json +1 -1
  75. package/packages/omo-codex/plugin/hooks/subagent-stop-checking-ulw-execute-continuation.json +1 -1
  76. package/packages/omo-codex/plugin/hooks/subagent-stop-verifying-lazycodex-executor-evidence.json +1 -1
  77. package/packages/omo-codex/plugin/hooks/user-prompt-submit-checking-ultrawork-trigger.json +1 -1
  78. package/packages/omo-codex/plugin/hooks/user-prompt-submit-checking-ulw-loop-steering.json +1 -1
  79. package/packages/omo-codex/plugin/hooks/user-prompt-submit-loading-project-rules.json +1 -1
  80. package/packages/omo-codex/plugin/package-lock.json +13 -13
  81. package/packages/omo-codex/plugin/package.json +1 -1
  82. package/packages/omo-codex/plugin/skills/data-scientist/SKILL.md +99 -239
  83. package/packages/omo-codex/plugin/skills/data-scientist/references/execution-surfaces.md +91 -0
  84. package/packages/omo-codex/plugin/skills/data-scientist/references/placement.md +74 -0
  85. package/packages/omo-codex/plugin/skills/data-scientist/references/polars-lane.md +95 -0
  86. package/packages/omo-codex/plugin/skills/data-scientist/references/uv-setup.md +1 -1
  87. package/packages/omo-codex/plugin/skills/data-scientist/references/visualization.md +64 -0
  88. package/packages/omo-codex/plugin/skills/data-scientist/scripts/ensure-js-deps.sh +28 -0
  89. package/packages/omo-codex/plugin/skills/data-scientist/scripts/ensure-py-deps.sh +37 -0
  90. package/packages/omo-codex/plugin/skills/ulw-research/SKILL.md +3 -1
  91. package/packages/omo-codex/scripts/install-dist/install-local.mjs +2 -2
  92. package/packages/shared-skills/skills/data-scientist/SKILL.md +99 -239
  93. package/packages/shared-skills/skills/data-scientist/references/execution-surfaces.md +91 -0
  94. package/packages/shared-skills/skills/data-scientist/references/placement.md +74 -0
  95. package/packages/shared-skills/skills/data-scientist/references/polars-lane.md +95 -0
  96. package/packages/shared-skills/skills/data-scientist/references/uv-setup.md +1 -1
  97. package/packages/shared-skills/skills/data-scientist/references/visualization.md +64 -0
  98. package/packages/shared-skills/skills/data-scientist/scripts/ensure-js-deps.sh +28 -0
  99. package/packages/shared-skills/skills/data-scientist/scripts/ensure-py-deps.sh +37 -0
  100. package/packages/shared-skills/skills/ulw-research/SKILL.md +3 -1
  101. package/dist/skills/data-scientist/references/common-scenarios.md +0 -176
  102. package/dist/skills/data-scientist/references/execution-templates.md +0 -197
  103. package/dist/skills/data-scientist/references/integration-patterns.md +0 -153
  104. package/dist/skills/data-scientist/references/performance-benchmarks.md +0 -37
  105. package/packages/omo-codex/plugin/skills/data-scientist/references/common-scenarios.md +0 -176
  106. package/packages/omo-codex/plugin/skills/data-scientist/references/execution-templates.md +0 -197
  107. package/packages/omo-codex/plugin/skills/data-scientist/references/integration-patterns.md +0 -153
  108. package/packages/omo-codex/plugin/skills/data-scientist/references/performance-benchmarks.md +0 -37
  109. package/packages/shared-skills/skills/data-scientist/references/common-scenarios.md +0 -176
  110. package/packages/shared-skills/skills/data-scientist/references/execution-templates.md +0 -197
  111. package/packages/shared-skills/skills/data-scientist/references/integration-patterns.md +0 -153
  112. package/packages/shared-skills/skills/data-scientist/references/performance-benchmarks.md +0 -37
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  "components/codegraph": {
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  "components/comment-checker": {
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  "name": "@code-yeongyu/codex-comment-checker",
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  "components/git-bash": {
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  "name": "@sisyphuslabs/codex-git-bash-hook",
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  "license": "MIT",
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  "lazycodex-executor-verify": "dist/cli.js"
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  "components/lsp": {
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  "name": "@code-yeongyu/codex-lsp",
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  "components/rules": {
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  "components/teammode": {
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  "devDependencies": {
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  "components/telemetry": {
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  "components/ultrawork": {
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  "name": "@code-yeongyu/codex-ultrawork",
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  ---
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  name: data-scientist
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- description: "Expert data processing specialist with intelligent DuckDB/Polars selection for maximum performance. Always includes numpy, never uses pandas, runs everything through uv. Triggers: 'analyze the data', 'analyze this file', 'what is in this CSV/parquet/json', 'summarize this', 'group by', 'filter rows', 'sort by', 'join these files', 'merge datasets', 'time series trend', 'last 30 days data', 'compare yesterday and today', 'distribution/histogram', 'correlation', 'clean duplicates', 'handle missing values', 'dataset larger than RAM', 'SQL query on files', 'DataFrame operations', 'chart/plot this data', DuckDB vs Polars selection, quick data exploration CLI. NOT for plain text/code inspection, configs, or tiny inline math."
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+ description: "Expert data processing with a hybrid engine strategy: resident-kernel engines first - DuckDB plus a resident Python stack (Polars/numpy/matplotlib) in persistent js/py eval kernels where the harness has them, bun/uv one-shots elsewhere - and per-action placement judgment (in-memory vs streaming vs remote-in-place). Triggers: 'analyze the data', 'what is in this CSV/parquet/json', 'summarize this', 'group by', 'filter rows', 'sort by', 'join these files', 'merge datasets', 'time series trend', 'compare yesterday and today', 'distribution/histogram', 'correlation', 'clean duplicates', 'handle missing values', 'dataset larger than RAM', 'SQL query on files', 'DataFrame operations', 'chart/plot this data', DuckDB vs Polars selection, quick data exploration CLI. NOT for plain text/code inspection, configs, or tiny inline math."
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  ---
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- # Data Scientist: High-Performance Data Processing Expert
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-
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- ## Role & Expertise
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-
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- Performance-obsessed data scientist with expertise in:
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- - Intelligent tool selection: DuckDB vs Polars based on operation characteristics
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- - Zero-copy data interchange via Apache Arrow
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- - Memory-efficient processing for datasets exceeding RAM
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- - SQL and DataFrame API mastery for analytical workloads
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-
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- ## Environment Setup
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-
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- Everything runs through **uv**. If `uv` is not on PATH, set it up first — pick the path that matches the system and run it, no manual guesswork:
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-
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- ```bash
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- bash scripts/setup-uv.sh # macOS / Linux / WSL / Git Bash auto-detects OS + arch, installs or updates uv to latest
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- ```
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-
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- ```powershell
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- powershell -ExecutionPolicy Bypass -File scripts/setup-uv.ps1 # native Windows — installs or updates uv to latest
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- ```
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-
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- Both scripts detect the platform, install uv when missing (official installer first, Homebrew/winget as fallback), upgrade it when present (`uv self update`), put it on PATH for the current shell, and verify with `uv --version`. The full per-platform matrix, PATH notes, and CI usage live in [references/uv-setup.md](references/uv-setup.md). Verify: `uv --version`.
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-
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- ## Core Principles
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-
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- ### ABSOLUTE RULES
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-
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- 1. **ALWAYS include numpy** in all data processing operations (`uv run --with numpy ...`)
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- 2. **NEVER use pandas** - Polars and DuckDB beat it decisively on every operation; the entire skill assumes pandas is absent
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- 3. **ALWAYS use Python via `uv run`** for calculations and data processing
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- 4. **Intelligent tool selection**: Choose DuckDB or Polars based on operation types, NOT arbitrarily
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- 5. **Zero-copy conversions**: hand data across DuckDB and Polars through Arrow `duckdb.sql(...).pl()`. Never call `.df()` (returns a pandas frame; crashes without pandas). Keep `pyarrow` in the package set or `.pl()` raises `ModuleNotFoundError`
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- 6. **Lazy evaluation**: Prefer `scan_csv`/`scan_parquet` and `.collect()` only when needed
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- 7. **Direct file queries**: Let DuckDB query files directly instead of loading to memory when possible
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-
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- ### Standard Package Pattern
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-
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- ```bash
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- # Default for data tasks (numpy + pyarrow are mandatory parts of the set)
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- uv run --with numpy --with duckdb --with polars --with pyarrow python -c "{code}"
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-
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- # With visualization (RECOMMENDED for most analysis requests)
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- uv run --with numpy --with duckdb --with polars --with pyarrow --with matplotlib python -c "{code}"
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-
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- # Pure Polars
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- uv run --with numpy --with polars python -c "{code}"
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- # Pure DuckDB (with the Arrow handoff available)
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- uv run --with numpy --with duckdb --with pyarrow python -c "{code}"
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- ```
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- **When to include matplotlib:**
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- - User requests visualization: "graph", "chart", "plot", "show me"
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- - Exploratory data analysis (EDA): "analyze", "trends", "patterns"
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- - Time-series analysis: "over time", "daily", "trends"
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- - Distribution analysis: "distribution", "histogram", "statistics"
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- - Comparison tasks: "compare", visual comparison implied
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- - **Default to including matplotlib** when in doubt - overhead is minimal
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- ## Tool Selection Logic
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- ### Decision Tree (Apply in Order)
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- 1. **Is it a `.duckdb` file?** **USE DUCKDB** (native format, optimal performance)
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- 2. **Simple one-off query without needing full data in memory?** → **USE DUCKDB** (direct file query, zero memory load)
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- 3. **Very heavy complex SQL query (multi-table joins, window functions)?** → **USE DUCKDB** (superior SQL optimizer)
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- 4. **Main operation is FILTERING?** → **USE POLARS** (typically the fastest by a wide margin — see benchmarks)
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- 5. **Main operation is SORTING?** → **USE POLARS** (typically the fastest)
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- 6. **Complex SQL JOINS needed?** → **USE DUCKDB** (stronger join engine, more join types)
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- 7. **Heavy GROUP BY AGGREGATIONS?** → **USE DUCKDB** (typically faster on large datasets)
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- 8. **Window functions with partitioning?** **POLARS** (typically faster)
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- 9. **Complex TRANSFORMATIONS (pivot, melt, string ops)?** **USE POLARS**
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- 10. **Dataset larger than available RAM?** **USE POLARS** (streaming support) or **DUCKDB** (out-of-core)
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- 11. **Mixed operations?** **USE HYBRID APPROACH** (leverage strengths of both)
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- ### Quick Reference
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-
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- ```
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- Simple query DuckDB
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- Heavy complex query DuckDB
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- Filter Polars
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- Sort → Polars
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- Join → DuckDB
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- Aggregate → DuckDB
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- Window Polars
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- Transform Polars
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- Too large for RAM Polars streaming
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- Mixed operations Hybrid
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- ```
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- The exact multipliers these heuristics distill (with sources and caveats — routing heuristics, not guarantees) live in [performance-benchmarks.md](references/performance-benchmarks.md).
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- ## Essential Patterns
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- ### DuckDB Direct File Query
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- ```python
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- import duckdb
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- # Query file directly - no memory load
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- result = duckdb.sql("""
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- SELECT category, SUM(amount) as total
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- FROM 'data.csv'
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- GROUP BY category
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- """).pl() # .pl() -> Polars via Arrow. Requires pyarrow. Never .df() (pandas).
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- ```
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- ### Polars Lazy Evaluation
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- ```python
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- import polars as pl
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- # Lazy scan - optimizes and executes once
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- result = (
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- pl.scan_csv('data.csv')
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- .filter(pl.col('value') > 100)
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- .sort('value', descending=True)
122
- .collect()
123
- )
124
- ```
125
-
126
- ### Zero-Copy DuckDB → Polars
127
-
128
- ```python
129
- import duckdb
130
- # Direct conversion via Arrow (pyarrow required in the package set)
131
- df_polars = duckdb.sql("SELECT * FROM 'data.csv'").pl()
132
- ```
133
-
134
- ### Hybrid Approach
135
-
136
- ```python
137
- import duckdb
138
- import polars as pl
139
-
140
- # Phase 1: DuckDB for joins
141
- joined = duckdb.sql(
142
- "SELECT * FROM 'orders.csv' o "
143
- "JOIN 'customers.csv' c ON o.customer_id = c.customer_id"
144
- ).pl()
145
-
146
- # Phase 2: Polars for filtering
147
- filtered = joined.filter(pl.col('amount') > 100)
148
-
149
- # Phase 3: Back to DuckDB for aggregation
150
- duckdb.register('filtered_data', filtered)
151
- final = duckdb.sql('SELECT category, SUM(amount) FROM filtered_data GROUP BY category').pl()
152
- ```
153
-
154
- ## Quick Query CLI
155
-
156
- For ad-hoc data exploration, use the built-in query runner:
157
-
158
- ```bash
159
- # SQL query (uses DuckDB)
160
- uv run scripts/quick-query.py data.csv "SELECT category, COUNT(*) FROM data GROUP BY category"
161
-
162
- # Filter expression — Polars SQL syntax, e.g. "amount > 100" (NOT Python: never passes through eval)
163
- uv run scripts/quick-query.py data.csv --filter "amount > 100"
164
-
165
- # Auto-describe (schema + stats)
166
- uv run scripts/quick-query.py data.parquet --describe
167
- ```
168
-
169
- Supports CSV, Parquet, JSON, NDJSON. Cross-platform (macOS, Linux, Windows). Excel files are not read directly — export to CSV or Parquet first.
170
-
171
- ## Reference Documentation
172
-
173
- For detailed guidance, consult these reference files:
174
-
175
- - **Environment setup per platform**: See [uv-setup.md](references/uv-setup.md) — install/update uv on macOS, Linux, Windows, WSL, CI; PATH fixes; `scripts/setup-uv.sh` / `scripts/setup-uv.ps1` automate it.
176
- - **Performance benchmarks and operation detection**: See [performance-benchmarks.md](references/performance-benchmarks.md)
177
- - **Integration patterns and best practices**: See [integration-patterns.md](references/integration-patterns.md)
178
- - **Execution templates**: See [execution-templates.md](references/execution-templates.md)
179
- - **Common scenarios**: See [common-scenarios.md](references/common-scenarios.md)
180
-
181
- ## Quality Assurance Process
182
-
183
- ### Before Execution
184
- 1. **Analyze request** → Detect operation types (filter, join, aggregate, etc.)
185
- 2. **Select optimal tool** → Apply decision tree based on detected operations
186
- 3. **Verify approach** → Confirm tool selection matches the benchmark heuristics
187
- 4. **Check package list** → Ensure numpy AND pyarrow are included
188
-
189
- ### During Execution
190
- 1. **Use lazy evaluation** when possible (Polars `scan_*`, DuckDB direct queries)
191
- 2. **Monitor for errors** and have fallback strategy ready
192
- 3. **Provide progress updates** for long operations
193
-
194
- ### After Execution
195
- 1. **Report performance** → Show processing time and row counts
196
- 2. **Validate results** → Confirm output matches expectations
197
- 3. **Document tool choice** → Explain why specific tool was selected
198
-
199
- ## Activation Context
200
-
201
- **Automatic activation triggers:**
202
-
203
- ### Exploratory Questions
204
- - "Analyze the data" / "What's in the data" / "What's in this file"
205
- - "Show me the data" / "Take a look at this file" / "Check the file contents"
206
-
207
- ### Temporal/Historical Analysis
208
- - "What happened in the past N days?" / "How's last week's data?"
209
- - "What's the trend for the last 30 days?" / "Compare yesterday and today"
210
-
211
- ### Aggregation/Summary Requests
212
- - "Summarize this" / "What's the total?" / "What's the average?"
213
- - "Show by category" / "Show statistics" / "How many?"
214
-
215
- ### Filtering/Search Patterns
216
- - "Show only above 100" / "Find specific conditions" / "Top 10"
217
-
218
- ### Comparison/Correlation
219
- - "Compare A and B" / "What's the difference?" / "Is there a correlation?" / "Merge two files"
220
-
221
- ### Transformation/Cleaning
222
- - "Clean this up" / "Remove duplicates" / "Handle missing values" / "Convert format"
223
-
224
- ### Technical Patterns
225
- - Working with CSV, Parquet, JSON, NDJSON, or `.duckdb` files
226
- - File paths ending in `.csv`, `.parquet`, `.json`, `.jsonl`, `.ndjson`, `.tsv`, `.duckdb`
227
- - Requests involving calculations or aggregations
228
- - Joining, filtering, sorting, or transforming datasets
229
- - Processing large datasets that may exceed memory
230
- - Comparing or analyzing data from multiple sources
231
- - Performance-critical data operations
232
- - SQL queries or DataFrame operations mentioned
233
-
234
- ### When NOT to Activate
235
- - Simple file reading for text/code inspection (use the harness's file-read surface)
236
- - Non-data files (images, videos, binaries)
237
- - Configuration files (YAML, TOML, JSON configs) unless specifically for data analysis
238
- - Small inline calculations (run them directly)
239
- - Excel files — convert to CSV/Parquet first
240
-
241
- ---
242
-
243
- **Core execution principle:** Always apply intelligent tool selection based on operation characteristics, never use pandas, and always include numpy and pyarrow in the execution environment.
6
+ # Data Scientist: Hybrid-Engine Data Processing
7
+
8
+ Answer data questions through the cheapest engine and surface that can prove the answer, and
9
+ decide where the computation should live before touching the data.
10
+
11
+ ## Execution surfaces: resident kernel first
12
+
13
+ A persistent REPL/eval kernel (many harnesses expose one for JavaScript and Python) is the
14
+ default surface. Reason: each one-shot process pays roughly a second of spawn-plus-import
15
+ overhead and re-scans the input file, while a resident connection amortizes both — after a
16
+ one-time load, repeat queries return in milliseconds. Exploration is repeat queries, so this
17
+ difference dominates the session.
18
+
19
+ 1. **JavaScript kernel (Bun)**: run `scripts/ensure-js-deps.sh` once; it prints the absolute
20
+ import path for `@duckdb/node-api`. Dynamic-import it, connect once, query across cells.
21
+ 2. **Python kernel**: the default surface for Python work. duckdb/numpy/matplotlib are
22
+ typically resident; Polars and pyarrow come from `scripts/ensure-py-deps.sh`, which
23
+ installs them once into a user cache keyed to the kernel's interpreter —
24
+ `sys.path.insert` the printed directory and import. The interpreter itself is never
25
+ mutated.
26
+ 3. **uv lane** (`uv run --with ...`): isolation for a heavy or crash-prone one-shot that
27
+ should not take the kernel down.
28
+ 4. **No kernel** (plain-shell harness): the same engines as one-shots `bun -e` for
29
+ DuckDB-js, `uv run python -c` for the Python stack — batching several questions per
30
+ process.
31
+
32
+ Per-surface patterns and pitfalls: read `references/execution-surfaces.md` before first use.
33
+
34
+ ## Engine selection
35
+
36
+ - **DuckDB** for SQL-shaped work: direct file queries, joins, aggregation, subqueries,
37
+ window functions. It queries CSV/Parquet/JSON in place without loading, spills to disk
38
+ past its memory limit, and reads remote files with the same syntax.
39
+ - **Polars** when the pipeline is DataFrame-shaped: expression-chain transforms, reshapes,
40
+ streaming datasets past RAM resident in the Python kernel via `ensure-py-deps.sh`.
41
+ Read `references/polars-lane.md` — the current 1.x API differs from widely-memorized
42
+ older spellings.
43
+ - **numpy** when numeric work goes beyond SQL/DataFrame aggregation: statistical tests,
44
+ linear algebra, FFT, random sampling.
45
+ - **matplotlib** for every chart read `references/visualization.md` first; it carries the
46
+ quality bar and a mandatory visual check.
47
+
48
+ Performance folklore ("X is Nx faster at filtering") varies with data shape, cardinality,
49
+ and hardware. When the engine choice materially matters, measure on the actual data instead
50
+ of trusting remembered multipliers.
51
+
52
+ ## Placement: decide where the computation lives
53
+
54
+ Probe before you compute — one cell: file size, free RAM, and (when unclear) a row count via
55
+ a direct scan. Then place the work:
56
+
57
+ - **Load into memory** when the working set stays within roughly a quarter of free RAM AND
58
+ the session will run repeated queries: `CREATE TABLE t AS SELECT ...` (or a collected
59
+ DataFrame) once, then iterate. One scan up front converts every later query from a file
60
+ re-scan into milliseconds.
61
+ - **Query in place / stream** when the question is single-pass, or the data exceeds RAM:
62
+ DuckDB reads files directly (`FROM 'data.csv'`); past RAM, cap DuckDB's memory and let it
63
+ spill, or use Polars' streaming engine in the Python kernel. NEVER load a larger-than-RAM
64
+ dataset fully into memory swapping stalls the whole machine, while streaming merely
65
+ takes longer.
66
+ - **Query remotely, in place** when the data lives elsewhere: DuckDB reads http(s)/S3
67
+ Parquet and CSV with projection and predicate pushdown, so fetch the columns and rows the
68
+ question needs, never the whole file. When data sits on another machine you can execute
69
+ on, ship the query to the data and return the small result. Rule: result much smaller
70
+ than data move the query; repeated local iteration planned move a pruned copy of the
71
+ data once.
72
+
73
+ Sizing heuristics and recipes: `references/placement.md`.
74
+
75
+ ## Hard rules
76
+
77
+ - **NEVER use pandas.** DuckDB and Polars beat it decisively on every workload this skill
78
+ covers, and the environments this skill assumes do not ship it — `.df()` on a DuckDB
79
+ result raises unless pandas is installed; convert with `.pl()` via Arrow instead.
80
+ - Excel files are not read directly: export to CSV or Parquet first.
81
+
82
+ ## Output contract
83
+
84
+ Answer the question; report row counts and timing for anything heavy; then stop — no bonus
85
+ charts, no extra exploration passes beyond what the question needed. Chart when asked, or
86
+ when the answer is a shape (trend, distribution, comparison) that prose cannot carry — then
87
+ follow `references/visualization.md` including its visual QA step.
88
+
89
+ ## References
90
+
91
+ | Read | When |
92
+ | --- | --- |
93
+ | `references/execution-surfaces.md` | before the first query on any surface: kernel patterns, one-shot recipes, escalation rules |
94
+ | `references/polars-lane.md` | DataFrame-shaped pipeline or data past RAM: current API, Arrow handoff, package sets |
95
+ | `references/placement.md` | before heavy or remote work: sizing probe, memory limits, remote reads |
96
+ | `references/visualization.md` | before any chart: type selection, quality bar, CJK fonts, visual QA |
97
+ | `references/uv-setup.md` | uv missing or broken on this machine |
98
+
99
+ ## CLI fallback
100
+
101
+ When no kernel or REPL surface exists, `uv run scripts/quick-query.py <file> [SQL]`
102
+ (`--filter <polars-sql-expr>`, `--describe`) answers ad-hoc questions with zero code.
103
+ Supports CSV, Parquet, JSON, NDJSON.
@@ -0,0 +1,91 @@
1
+ # Execution surfaces
2
+
3
+ How to run the engines on each surface, and when to escalate between them.
4
+
5
+ ## Persistent kernel, JavaScript (Bun)
6
+
7
+ One-time setup per machine — the bundled script installs `@duckdb/node-api` into a user-level
8
+ cache outside any repo and prints the absolute import path (its only stdout line):
9
+
10
+ ```bash
11
+ bash scripts/ensure-js-deps.sh # run from the skill directory
12
+ ```
13
+
14
+ In the kernel — top-level `require` may not exist, dynamic import always works:
15
+
16
+ ```js
17
+ const { DuckDBInstance } = await import("<printed path>");
18
+ const db = await DuckDBInstance.create(":memory:");
19
+ const conn = await db.connect();
20
+ const reader = await conn.runAndReadAll("SELECT category, SUM(v) AS total FROM 'data.csv' GROUP BY 1");
21
+ reader.getRowObjects(); // array of plain row objects
22
+ ```
23
+
24
+ - The connection and any tables created live across cells — connect once per session, reuse.
25
+ - COUNT/SUM over integer columns return BigInt; convert (`Number(x)` or `String(x)`) before
26
+ `JSON.stringify`, which throws on BigInt.
27
+ - Bun builtins cover ingest gaps with zero installs: `Bun.JSONL.parse`, `Bun.JSON5.parse`,
28
+ `Bun.XML.parse`, `Bun.TOML.parse`, `Bun.Archive` for tarballs.
29
+ - nodejs-polars is NOT part of this skill's toolkit: its API lags the Python release by
30
+ major versions (option objects that work in Python throw napi type errors). Polars work
31
+ belongs to the Python kernel (below).
32
+
33
+ ## Persistent kernel, Python (the default Python surface)
34
+
35
+ duckdb, numpy, and matplotlib are typically resident — import and use them directly.
36
+ Polars and pyarrow rarely ship with a kernel, so inject them once per session (run from the
37
+ skill directory; the script installs on first use, then just prints the path):
38
+
39
+ ```python
40
+ import subprocess, sys
41
+ site = subprocess.run(["bash", "scripts/ensure-py-deps.sh", sys.executable],
42
+ capture_output=True, text=True, check=True).stdout.strip()
43
+ sys.path.insert(0, site)
44
+ import polars as pl
45
+ import pyarrow
46
+ ```
47
+
48
+ - The install goes to a user cache keyed to the kernel's interpreter version; the
49
+ interpreter itself is never mutated (it is frequently an externally-managed system
50
+ Python, and mutating it breaks other tools).
51
+ - After injection the whole Python stack is resident: `duckdb.sql(...).pl()` hands off via
52
+ Arrow, `duckdb.register(name, df)` goes the other way, and Polars lazy pipelines run
53
+ in-kernel across cells.
54
+ - `duckdb.sql("SELECT ... FROM 'data.csv'")` queries files in place; without the injection,
55
+ keep results in DuckDB or fetch plain Python values (`.fetchall()`).
56
+ - matplotlib figures render natively in kernels that display rich output; also save a PNG so
57
+ the artifact survives the session.
58
+
59
+ ## uv lane (fallback and isolation)
60
+
61
+ ```bash
62
+ uv run --with duckdb --with polars --with pyarrow --with numpy python -c "<code>"
63
+ ```
64
+
65
+ - Reach for it when there is no kernel, or when a heavy, crash-prone one-shot should not
66
+ run inside (and possibly take down) the kernel.
67
+ - Include exactly the packages the code imports, plus pyarrow whenever `.pl()` is used.
68
+ - Each invocation pays process spawn plus imports (roughly 0.3s warm) and re-reads its inputs —
69
+ fine for one-shots, wasteful for exploration loops.
70
+ - Past a few lines, a temp file beats `-c` quoting: write the script, `uv run script.py`.
71
+
72
+ ## No kernel at all
73
+
74
+ Same engines, one process per batch of questions:
75
+
76
+ ```bash
77
+ bun -e '<the JavaScript kernel pattern above>' # DuckDB via @duckdb/node-api
78
+ uv run --with duckdb python -c "<sql via duckdb.sql>" # DuckDB via Python
79
+ uv run scripts/quick-query.py data.csv "SELECT ..." # zero-code CLI fallback
80
+ ```
81
+
82
+ ## Escalation rules
83
+
84
+ Start on the resident kernel. Move a step down when a concrete need appears:
85
+
86
+ - polars/pyarrow missing from the kernel — inject via `ensure-py-deps.sh` (above), not a
87
+ uv one-shot.
88
+ - Crash-prone or memory-hungry one-shot that should not take the kernel down — uv lane.
89
+ - No kernel on this harness — one-shot recipes above.
90
+ - Data lives remotely or exceeds local RAM — read `placement.md` and move the query, not
91
+ the data.
@@ -0,0 +1,74 @@
1
+ # Placement: where should this computation live?
2
+
3
+ Decide before touching the data. Wrong placement wastes minutes (re-scanning a file queried
4
+ ten times) or kills the machine (loading a dataset larger than RAM and swapping).
5
+
6
+ ## The probe (run first, once)
7
+
8
+ Three facts, one cell or script:
9
+
10
+ ```python
11
+ import os, shutil, subprocess, sys
12
+ size = os.path.getsize("data.csv") # bytes on disk
13
+ disk_free = shutil.disk_usage(".").free # spill headroom
14
+ if sys.platform == "darwin":
15
+ ram = int(subprocess.run(["sysctl", "-n", "hw.memsize"], capture_output=True, text=True).stdout)
16
+ else:
17
+ ram = os.sysconf("SC_PAGE_SIZE") * os.sysconf("SC_PHYS_PAGES")
18
+ # row estimate without loading (DuckDB streams the scan):
19
+ # duckdb.sql("SELECT count(*) FROM 'data.csv'")
20
+ ```
21
+
22
+ CSV typically expands 2-5x in memory (string columns dominate); Parquet expands less
23
+ predictably — compressed columns can inflate 10x. Estimate the working set from the
24
+ decompressed size of the columns the question actually touches, not the file size.
25
+
26
+ ## In memory — load once, iterate
27
+
28
+ When the working set stays within roughly 25% of free RAM AND the session will run repeated
29
+ queries: load once (`CREATE TABLE t AS SELECT ...` in DuckDB, or a collected DataFrame),
30
+ then iterate. One scan up front converts every later query from a file re-scan into
31
+ milliseconds. Prune at load time — select only the needed columns, filter obvious dross —
32
+ so the resident table is the working set, not the raw file.
33
+
34
+ ## In place / streaming — single pass, or bigger than RAM
35
+
36
+ - Single-pass questions: query the file directly (`FROM 'data.csv'`). Loading first is pure
37
+ waste.
38
+ - Bigger than RAM, SQL-shaped: cap DuckDB and let it spill —
39
+
40
+ ```sql
41
+ SET memory_limit = '4GB';
42
+ SET temp_directory = '/tmp/duckdb_spill';
43
+ ```
44
+
45
+ Aggregations, sorts, and window functions run out-of-core: slower, but bounded.
46
+ - Bigger than RAM, DataFrame-shaped: Polars streaming (`collect(engine="streaming")` on a
47
+ lazy plan) in the resident kernel — or a uv one-shot on kernel-less harnesses.
48
+ - Manual chunked loops (read N rows, process, repeat) are the last resort — the engines'
49
+ own out-of-core paths are faster and simpler than hand-rolled chunking.
50
+
51
+ ## Remote, in place — move the query to the data
52
+
53
+ - Files behind http(s)/S3: DuckDB's httpfs extension reads Parquet and CSV remotely with
54
+ projection and predicate pushdown —
55
+
56
+ ```sql
57
+ INSTALL httpfs; LOAD httpfs; -- one-time per environment
58
+ SELECT region, SUM(amount) FROM 'https://example.com/sales.parquet'
59
+ WHERE sale_date >= '2026-01-01' GROUP BY region;
60
+ ```
61
+
62
+ Only matching row groups and referenced columns cross the network, not the file.
63
+ - Data on another machine you can execute on (a remote worker with more RAM, a box closer
64
+ to the data): run the query there and return the aggregate. A group-by result is
65
+ kilobytes; the source is gigabytes.
66
+ - Decision rule: result much smaller than data — move the query. Repeated local iteration
67
+ on one slice — move a pruned copy of that slice once, then work locally in memory.
68
+
69
+ ## Hardware notes
70
+
71
+ - Both engines parallelize across all cores by default; leave that alone except on shared
72
+ machines (`SET threads = N` in DuckDB, `POLARS_MAX_THREADS` for Polars).
73
+ - Sustained swapping is the failure mode to avoid on memory-tight machines: when the probe
74
+ says the working set is close to free RAM, choose streaming, not hope.