nmr-processing 9.5.1 → 9.5.2-pre.1686022430

package/lib/apodization/apodization.d.ts

@@ -6,17 +6,23 @@ export interface DataReIm {
     /** Array of im values */
     im: DoubleArray;
 }
-interface ApodizationOptions {
+export interface ApodizationFilterOptions {
     /**
      * number of points at the end of the shape to apply the window function inverted
      * @default 0
      */
     pointsToShift?: number;
-    compose: ShapeOptions;
+    compose?: ShapeOptions;
+    /**
+     * apply the window data to input data
+     * @default true
+     */
+    apply?: boolean;
 }
-export declare function apodization(data: DataReIm, options: ApodizationOptions): {
+export declare function apodization(data: DataReIm, options?: ApodizationFilterOptions): {
+    windowData: Float64Array;
+    /** Array of re values */
     re: DoubleArray;
+    /** Array of im values */
     im: DoubleArray;
-    windowData: Float64Array;
 };
-export {};

package/lib/apodization/apodization.js

@@ -3,15 +3,18 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.apodization = void 0;
 const applyWindow_1 = require("./applyWindow");
 const compose_1 = require("./compose");
-function apodization(data, options) {
-    const { compose: composeOptions, pointsToShift } = options;
+function apodization(data, options = {}) {
+    const { compose: composeOptions, pointsToShift, apply = true } = options;
+    if (!composeOptions) {
+        return { ...data, windowData: new Float64Array(data.re.length).fill(1) };
+    }
     const windowData = (0, compose_1.compose)(composeOptions);
     const applyWindowOptions = {
         windowData,
         pointsToShift,
     };
-    const re = (0, applyWindow_1.applyWindow)(data.re, applyWindowOptions);
-    const im = (0, applyWindow_1.applyWindow)(data.im, applyWindowOptions);
+    const re = apply ? (0, applyWindow_1.applyWindow)(data.re, applyWindowOptions) : data.re;
+    const im = apply ? (0, applyWindow_1.applyWindow)(data.im, applyWindowOptions) : data.im;
     return { re, im, windowData };
 }
 exports.apodization = apodization;

package/lib/apodization/apodization.js.map

@@ -1 +1 @@
-{"version":3,"file":"apodization.js","sourceRoot":"","sources":["../../src/apodization/apodization.ts"],"names":[],"mappings":";;;AAEA,+CAA4C;AAC5C,uCAAkD;AAiBlD,SAAgB,WAAW,CAAC,IAAc,EAAE,OAA2B;IACrE,MAAM,EAAE,OAAO,EAAE,cAAc,EAAE,aAAa,EAAE,GAAG,OAAO,CAAC;IAC3D,MAAM,UAAU,GAAG,IAAA,iBAAO,EAAC,cAAc,CAAC,CAAC;IAE3C,MAAM,kBAAkB,GAAG;QACzB,UAAU;QACV,aAAa;KACd,CAAC;IAEF,MAAM,EAAE,GAAG,IAAA,yBAAW,EAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC;IACpD,MAAM,EAAE,GAAG,IAAA,yBAAW,EAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC;IAEpD,OAAO,EAAE,EAAE,EAAE,EAAE,EAAE,UAAU,EAAE,CAAC;AAChC,CAAC;AAbD,kCAaC"}
+{"version":3,"file":"apodization.js","sourceRoot":"","sources":["../../src/apodization/apodization.ts"],"names":[],"mappings":";;;AAEA,+CAA4C;AAC5C,uCAAkD;AAsBlD,SAAgB,WAAW,CACzB,IAAc,EACd,UAAoC,EAAE;IAEtC,MAAM,EAAE,OAAO,EAAE,cAAc,EAAE,aAAa,EAAE,KAAK,GAAG,IAAI,EAAE,GAAG,OAAO,CAAC;IAEzE,IAAI,CAAC,cAAc,EAAE;QACnB,OAAO,EAAE,GAAG,IAAI,EAAE,UAAU,EAAE,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;KAC1E;IAED,MAAM,UAAU,GAAG,IAAA,iBAAO,EAAC,cAAc,CAAC,CAAC;IAE3C,MAAM,kBAAkB,GAAG;QACzB,UAAU;QACV,aAAa;KACd,CAAC;IAEF,MAAM,EAAE,GAAG,KAAK,CAAC,CAAC,CAAC,IAAA,yBAAW,EAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;IACtE,MAAM,EAAE,GAAG,KAAK,CAAC,CAAC,CAAC,IAAA,yBAAW,EAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;IAEtE,OAAO,EAAE,EAAE,EAAE,EAAE,EAAE,UAAU,EAAE,CAAC;AAChC,CAAC;AArBD,kCAqBC"}

package/lib/apodization/applyWindow.js.map

@@ -1 +1 @@
-{"version":3,"file":"applyWindow.js","sourceRoot":"","sources":["../../src/apodization/applyWindow.ts"],"names":[],"mappings":";;;AA0BA;;GAEG;AACH,SAAgB,WAAW,CAAC,IAAiB,EAAE,OAA2B;IACxE,MAAM,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC;IAE/B,MAAM,EACJ,UAAU,EACV,KAAK,GAAG,CAAC,EACT,MAAM,GAAG,UAAU,EACnB,aAAa,GAAG,CAAC,EACjB,MAAM,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,GAChC,GAAG,OAAO,CAAC;IAEZ,MAAM,aAAa,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,MAAM,EAAE,UAAU,GAAG,aAAa,CAAC,CAAC;IAC3E,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE;QACjD,MAAM,CAAC,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,EAAE,CAAC,CAAC;KAC9B;IAED,KAAK,IAAI,CAAC,GAAG,UAAU,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,GAAG,aAAa,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QAC3E,MAAM,CAAC,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,EAAE,CAAC,CAAC;KAC9B;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AArBD,kCAqBC"}
+{"version":3,"file":"applyWindow.js","sourceRoot":"","sources":["../../src/apodization/applyWindow.ts"],"names":[],"mappings":";;;AA0BA;;GAEG;AACH,SAAgB,WAAW,CAAC,IAAiB,EAAE,OAA2B;IACxE,MAAM,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC;IAE/B,MAAM,EACJ,UAAU,EACV,KAAK,GAAG,CAAC,EACT,MAAM,GAAG,UAAU,EACnB,aAAa,GAAG,CAAC,EACjB,MAAM,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,GAChC,GAAG,OAAO,CAAC;IAEZ,MAAM,aAAa,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,MAAM,EAAE,UAAU,GAAG,aAAa,CAAC,CAAC;IAC3E,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE;QACjD,MAAM,CAAC,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,EAAE,CAAC,CAAC;KAC9B;IACD,KAAK,IAAI,CAAC,GAAG,UAAU,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,GAAG,aAAa,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QAC3E,MAAM,CAAC,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,EAAE,CAAC,CAAC;KAC9B;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AApBD,kCAoBC"}

package/lib/apodization/compose.js.map

@@ -1 +1 @@
-{"version":3,"file":"compose.js","sourceRoot":"","sources":["../../src/apodization/compose.ts"],"names":[],"mappings":";;;AAAA,+CAA4C;AAC5C,+CAA4C;AAE5C,6CAA0C;AAyB1C,SAAgB,OAAO,CAAC,YAA0B;IAChD,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,EAAE,EAAE,GAAG,YAAY,CAAC;IACzD,IAAI,IAAI,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAChD,MAAM,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE;QACzB,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,CAAC,EAAE,GAAG,OAAO,CAAC;QACrC,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAC;QACxC,MAAM,MAAM,GACV,QAAQ,IAAI,YAAY,CAAC,CAAC,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,UAAU,GAAG,KAAK,CAAC;QAEtE,MAAM,UAAU,GAAG,IAAA,iBAAO,EAAC,IAAA,yBAAW,EAAC,KAAK,CAAC,EAAE,MAAM,CAAC,CAAC;QACvD,IAAA,yBAAW,EAAC,IAAI,EAAE;YAChB,UAAU;YACV,MAAM;YACN,KAAK;YACL,MAAM,EAAE,IAAI;SACb,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IACH,OAAO,IAAI,CAAC;AACd,CAAC;AAlBD,0BAkBC"}
+{"version":3,"file":"compose.js","sourceRoot":"","sources":["../../src/apodization/compose.ts"],"names":[],"mappings":";;;AAAA,+CAA4C;AAC5C,+CAA4C;AAE5C,6CAA0C;AAyB1C,SAAgB,OAAO,CAAC,YAA0B;IAChD,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,EAAE,EAAE,GAAG,YAAY,CAAC;IACzD,IAAI,IAAI,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAChD,MAAM,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE;QACzB,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,CAAC,EAAE,GAAG,OAAO,CAAC;QACrC,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAC;QACxC,MAAM,MAAM,GACV,QAAQ,IAAI,YAAY,CAAC,CAAC,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,UAAU,GAAG,KAAK,CAAC;QAEtE,MAAM,UAAU,GAAG,IAAA,iBAAO,EAAC,IAAA,yBAAW,EAAC,KAAK,CAAC,EAAE,MAAM,CAAC,CAAC;QAEvD,IAAA,yBAAW,EAAC,IAAI,EAAE;YAChB,UAAU;YACV,MAAM;YACN,KAAK;YACL,MAAM,EAAE,IAAI;SACb,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IACH,OAAO,IAAI,CAAC;AACd,CAAC;AAnBD,0BAmBC"}

package/lib/apodization/getFunction.js

@@ -3,6 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.getFunction = void 0;
 const exponential_1 = require("./shapes/exponential");
 const lorentzToGauss_1 = require("./shapes/lorentzToGauss");
+const sineBell_1 = require("./shapes/sineBell");
 function getFunction(shape) {
     const { kind, options } = shape;
     switch (kind) {
@@ -10,6 +11,8 @@ function getFunction(shape) {
             return (0, exponential_1.exponential)(options);
         case 'lorentzToGauss':
             return (0, lorentzToGauss_1.lorentzToGauss)(options);
+        case 'sineBell':
+            return (0, sineBell_1.sineBell)(options);
         default:
             throw Error(`Unknown distribution ${kind}`);
     }

package/lib/apodization/getFunction.js.map

@@ -1 +1 @@
-{"version":3,"file":"getFunction.js","sourceRoot":"","sources":["../../src/apodization/getFunction.ts"],"names":[],"mappings":";;;AACA,sDAAmD;AACnD,4DAAyD;AAEzD,SAAgB,WAAW,CAAC,KAAsB;IAChD,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,KAAK,CAAC;IAChC,QAAQ,IAAI,EAAE;QACZ,KAAK,aAAa;YAChB,OAAO,IAAA,yBAAW,EAAC,OAAO,CAAC,CAAC;QAC9B,KAAK,gBAAgB;YACnB,OAAO,IAAA,+BAAc,EAAC,OAAO,CAAC,CAAC;QACjC;YACE,MAAM,KAAK,CAAC,wBAAwB,IAAc,EAAE,CAAC,CAAC;KACzD;AACH,CAAC;AAVD,kCAUC"}
+{"version":3,"file":"getFunction.js","sourceRoot":"","sources":["../../src/apodization/getFunction.ts"],"names":[],"mappings":";;;AACA,sDAAmD;AACnD,4DAAyD;AACzD,gDAA6C;AAE7C,SAAgB,WAAW,CAAC,KAAsB;IAChD,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,KAAK,CAAC;IAChC,QAAQ,IAAI,EAAE;QACZ,KAAK,aAAa;YAChB,OAAO,IAAA,yBAAW,EAAC,OAAO,CAAC,CAAC;QAC9B,KAAK,gBAAgB;YACnB,OAAO,IAAA,+BAAc,EAAC,OAAO,CAAC,CAAC;QACjC,KAAK,UAAU;YACb,OAAO,IAAA,mBAAQ,EAAC,OAAO,CAAC,CAAC;QAC3B;YACE,MAAM,KAAK,CAAC,wBAAwB,IAAc,EAAE,CAAC,CAAC;KACzD;AACH,CAAC;AAZD,kCAYC"}

package/lib/apodization/shapes/WindowFunctions.d.ts

@@ -1,5 +1,6 @@
 import type { ExponentialOptions } from './exponential';
 import type { LorentzToGaussOptions } from './lorentzToGauss';
+import { SineBellOptions } from './sineBell';
 interface Exponential {
     kind: 'exponential';
     options: ExponentialOptions;
@@ -8,5 +9,9 @@ interface LorentToGauss {
     kind: 'lorentzToGauss';
     options: LorentzToGaussOptions;
 }
-export type WindowFunctions = Exponential | LorentToGauss;
+interface SineBell {
+    kind: 'sineBell';
+    options: SineBellOptions;
+}
+export type WindowFunctions = Exponential | LorentToGauss | SineBell;
 export {};

package/lib/apodization/shapes/sineBell.d.ts

@@ -0,0 +1,27 @@
+export interface SineBellOptions {
+    /**
+     * Specifies the exponent of the sine-bell; Non-integer values are allowed.
+     * Common values are 1.0 (for ordinary sine-bell) and 2.0 (for squared-bell functions).
+     * @default 1
+     */
+    exponent?: number;
+    /**
+     * Specifies the starting point of the sine-bell in units of pi radians.
+     * Common values are 0.0 (for a sine window which starts height at 0.0) and
+     * 0.5 (for a cosine window, which starts at height 1.0).
+     * @default 0
+     */
+    offset?: number;
+    /**
+     * Specifies the ending point of the sine-bell in units of pi radians.
+     * Common values are 1.0 (for a window which goes to 0.0 height at the last point) and
+     * 0.95 (for a window which doesn't go all the way to 0.0).
+     * @default 1
+     */
+    end?: number;
+    /**
+     * Specifies the number of points in the window function.
+     */
+    length: number;
+}
+export declare function sineBell(options: SineBellOptions): (i: number) => number;

package/lib/apodization/shapes/sineBell.js

@@ -0,0 +1,17 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.sineBell = void 0;
+function sineBell(options) {
+    const { exponent = 1, offset = 0, end = 1, length } = options;
+    if (length === undefined) {
+        throw new Error('length options should exists for sineBell shape');
+    }
+    if (end < 0 || end > 1) {
+        throw new Error(`the end parameter should be [0-1]`);
+    }
+    const c1 = Math.PI * offset;
+    const c2 = (Math.PI * (end - offset)) / (length - 1);
+    return (i) => Math.pow(Math.sin(c1 + c2 * i), exponent);
+}
+exports.sineBell = sineBell;
+//# sourceMappingURL=sineBell.js.map

package/lib/apodization/shapes/sineBell.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"sineBell.js","sourceRoot":"","sources":["../../../src/apodization/shapes/sineBell.ts"],"names":[],"mappings":";;;AA2BA,SAAgB,QAAQ,CAAC,OAAwB;IAC/C,MAAM,EAAE,QAAQ,GAAG,CAAC,EAAE,MAAM,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;IAE9D,IAAI,MAAM,KAAK,SAAS,EAAE;QACxB,MAAM,IAAI,KAAK,CAAC,iDAAiD,CAAC,CAAC;KACpE;IAED,IAAI,GAAG,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE;QACtB,MAAM,IAAI,KAAK,CAAC,mCAAmC,CAAC,CAAC;KACtD;IACD,MAAM,EAAE,GAAG,IAAI,CAAC,EAAE,GAAG,MAAM,CAAC;IAC5B,MAAM,EAAE,GAAG,CAAC,IAAI,CAAC,EAAE,GAAG,CAAC,GAAG,GAAG,MAAM,CAAC,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IACrD,OAAO,CAAC,CAAS,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;AAClE,CAAC;AAbD,4BAaC"}

package/lib/apodization/utils/getData.js.map

@@ -1 +1 @@
-{"version":3,"file":"getData.js","sourceRoot":"","sources":["../../../src/apodization/utils/getData.ts"],"names":[],"mappings":";;;AAAA;;GAEG;AACH,SAAgB,OAAO,CAAC,IAA2B,EAAE,MAAc;IACjE,MAAM,IAAI,GAAG,IAAI,YAAY,CAAC,MAAM,CAAC,CAAC;IACtC,IAAI,GAAG,GAAG,MAAM,CAAC,gBAAgB,CAAC;IAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE,EAAE;QAC/B,MAAM,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;QACtB,IAAI,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;QAChB,IAAI,KAAK,GAAG,GAAG;YAAE,GAAG,GAAG,KAAK,CAAC;KAC9B;IAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE;QAAE,IAAI,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC;IAChD,OAAO,IAAI,CAAC;AACd,CAAC;AAXD,0BAWC"}
+{"version":3,"file":"getData.js","sourceRoot":"","sources":["../../../src/apodization/utils/getData.ts"],"names":[],"mappings":";;;AAAA;;GAEG;AACH,SAAgB,OAAO,CAAC,IAA2B,EAAE,MAAc;IACjE,MAAM,IAAI,GAAG,IAAI,YAAY,CAAC,MAAM,CAAC,CAAC;IACtC,IAAI,GAAG,GAAG,MAAM,CAAC,gBAAgB,CAAC;IAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE,EAAE;QAC/B,MAAM,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;QACtB,IAAI,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;QAChB,IAAI,KAAK,GAAG,GAAG;YAAE,GAAG,GAAG,KAAK,CAAC;KAC9B;IACD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE;QAAE,IAAI,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC;IAChD,OAAO,IAAI,CAAC;AACd,CAAC;AAVD,0BAUC"}

package/lib/assignment/utils/getAssignment/buildAssignments.js

@@ -120,7 +120,6 @@ async function buildAssignments(props) {
 }
 exports.buildAssignments = buildAssignments;
 function annotateSpectraData(input) {
-    var _a, _b;
     const { store, spectra, diaIDPeerPossibleAssignment, targets } = input;
     const { solutions } = store;
     const mapSignalId = {};
@@ -169,9 +168,9 @@ function annotateSpectraData(input) {
                         const signal = spectrum.zones[elementIndex].signals[signalIndex];
                         if (!signal[axis].diaIDs)
                             signal[axis].diaIDs = [];
-                        if ((_a = signal[axis].diaIDs) === null || _a === void 0 ? void 0 : _a.includes(diaId))
+                        if (signal[axis].diaIDs?.includes(diaId))
                             continue;
-                        (_b = signal[axis].diaIDs) === null || _b === void 0 ? void 0 : _b.push(diaId);
+                        signal[axis].diaIDs?.push(diaId);
                     }
                 }
             }

package/lib/assignment/utils/getAssignment/buildAssignments.js.map

@@ -1 +1 @@
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package/lib/constants/SignalsKinds.d.ts

@@ -0,0 +1,9 @@
+export declare const SignalKinds: {
+    label: string;
+    value: string;
+}[];
+export declare const SignalKindsToInclude: string[];
+export declare const DatumKind: {
+    signal: string;
+    mixed: string;
+};

package/lib/constants/SignalsKinds.js

@@ -0,0 +1,40 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DatumKind = exports.SignalKindsToInclude = exports.SignalKinds = void 0;
+exports.SignalKinds = [
+    {
+        label: 'Signal',
+        value: 'signal',
+    },
+    {
+        label: 'Reference',
+        value: 'reference',
+    },
+    {
+        label: 'Solvent',
+        value: 'solvent',
+    },
+    {
+        label: 'Impurity',
+        value: 'impurity',
+    },
+    {
+        label: 'Standard',
+        value: 'standard',
+    },
+    {
+        label: 'P1',
+        value: 'p1',
+    },
+    {
+        label: 'P2',
+        value: 'p2',
+    },
+    {
+        label: 'P3',
+        value: 'p3',
+    },
+];
+exports.SignalKindsToInclude = ['signal'];
+exports.DatumKind = { signal: 'signal', mixed: 'mixed' };
+//# sourceMappingURL=SignalsKinds.js.map

package/lib/constants/SignalsKinds.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SignalsKinds.js","sourceRoot":"","sources":["../../src/constants/SignalsKinds.ts"],"names":[],"mappings":";;;AAAa,QAAA,WAAW,GAAuC;IAC7D;QACE,KAAK,EAAE,QAAQ;QACf,KAAK,EAAE,QAAQ;KAChB;IACD;QACE,KAAK,EAAE,WAAW;QAClB,KAAK,EAAE,WAAW;KACnB;IACD;QACE,KAAK,EAAE,SAAS;QAChB,KAAK,EAAE,SAAS;KACjB;IACD;QACE,KAAK,EAAE,UAAU;QACjB,KAAK,EAAE,UAAU;KAClB;IACD;QACE,KAAK,EAAE,UAAU;QACjB,KAAK,EAAE,UAAU;KAClB;IACD;QACE,KAAK,EAAE,IAAI;QACX,KAAK,EAAE,IAAI;KACZ;IACD;QACE,KAAK,EAAE,IAAI;QACX,KAAK,EAAE,IAAI;KACZ;IACD;QACE,KAAK,EAAE,IAAI;QACX,KAAK,EAAE,IAAI;KACZ;CACF,CAAC;AAEW,QAAA,oBAAoB,GAAG,CAAC,QAAQ,CAAC,CAAC;AAClC,QAAA,SAAS,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC"}

package/lib/datum/ExclusionZone.d.ts

@@ -0,0 +1,5 @@
+export interface ExclusionZone {
+    id: string;
+    from: number;
+    to: number;
+}

package/lib/datum/ExclusionZone.js

@@ -0,0 +1,3 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+//# sourceMappingURL=ExclusionZone.js.map

package/lib/datum/ExclusionZone.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ExclusionZone.js","sourceRoot":"","sources":["../../src/datum/ExclusionZone.ts"],"names":[],"mappings":""}

package/lib/datum/Filters.d.ts

@@ -0,0 +1,14 @@
+import { FilterDomainUpdateRules } from './FiltersManager';
+export type { ApodizationOptions } from './data1d/filter1d/apodization/apodization';
+export type { BaselineAlgorithms, PolynomialOptions, AirplsOptions, BaselineCorrectionOptions, } from './data1d/filter1d/baselineCorrection';
+export type { PhaseCorrectionParameters, AutoPhaseCorrectionOptions, } from './data1d/filter1d/phaseCorrection';
+export type { ZeroFillingOptions } from './data1d/filter1d/zeroFilling';
+export { apodizationFilter } from './data1d/filter1d/apodization/apodizationFilter';
+export declare const Filters: Record<string, {
+    apply: any;
+    reduce: any;
+    isApplicable: any;
+    name: string;
+    id: string;
+    DOMAIN_UPDATE_RULES: Readonly<FilterDomainUpdateRules>;
+}>;

package/lib/datum/Filters.js

@@ -0,0 +1,55 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.Filters = exports.apodizationFilter = void 0;
+const apodization = __importStar(require("./data1d/filter1d/apodization/apodization"));
+const baselineCorrection = __importStar(require("./data1d/filter1d/baselineCorrection"));
+const digitalFilter = __importStar(require("./data1d/filter1d/digitalFilter"));
+const equallySpaced = __importStar(require("./data1d/filter1d/equallySpaced"));
+const exclusionZones = __importStar(require("./data1d/filter1d/exclusionZones"));
+const fft = __importStar(require("./data1d/filter1d/fft"));
+const phaseCorrection = __importStar(require("./data1d/filter1d/phaseCorrection"));
+const shiftX = __importStar(require("./data1d/filter1d/shiftX"));
+const signalProcessing = __importStar(require("./data1d/filter1d/signalProcessing"));
+const zeroFilling = __importStar(require("./data1d/filter1d/zeroFilling"));
+const shift2DX = __importStar(require("./data2d/filter2d/shiftX"));
+const shift2DY = __importStar(require("./data2d/filter2d/shiftY"));
+var apodizationFilter_1 = require("./data1d/filter1d/apodization/apodizationFilter");
+Object.defineProperty(exports, "apodizationFilter", { enumerable: true, get: function () { return apodizationFilter_1.apodizationFilter; } });
+exports.Filters = {
+    apodization,
+    exclusionZones,
+    signalProcessing,
+    baselineCorrection,
+    digitalFilter,
+    equallySpaced,
+    fft,
+    phaseCorrection,
+    shiftX,
+    zeroFilling,
+    shift2DX,
+    shift2DY,
+};
+//# sourceMappingURL=Filters.js.map

package/lib/datum/Filters.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Filters.js","sourceRoot":"","sources":["../../src/datum/Filters.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;AACA,uFAAyE;AACzE,yFAA2E;AAC3E,+EAAiE;AACjE,+EAAiE;AACjE,iFAAmE;AACnE,2DAA6C;AAC7C,mFAAqE;AACrE,iEAAmD;AACnD,qFAAuE;AACvE,2EAA6D;AAC7D,mEAAqD;AACrD,mEAAqD;AAerD,qFAAoF;AAA3E,sHAAA,iBAAiB,OAAA;AAEb,QAAA,OAAO,GAUhB;IACF,WAAW;IACX,cAAc;IACd,gBAAgB;IAChB,kBAAkB;IAClB,aAAa;IACb,aAAa;IACb,GAAG;IACH,eAAe;IACf,MAAM;IACN,WAAW;IACX,QAAQ;IACR,QAAQ;CACT,CAAC"}

package/lib/datum/FiltersManager.d.ts

@@ -0,0 +1,31 @@
+import { BaseFilter, Filter } from '../types/Filter';
+import { Entry1D } from './data1d/Entry1D';
+import { Entry2D } from './data2d/Entry2D';
+export interface FilterDomainUpdateRules {
+    updateYDomain: boolean;
+    updateXDomain: boolean;
+}
+export type Entry = Entry1D | Entry2D;
+interface ApplyFilterOptions {
+    forceReapply?: boolean;
+    filterIndex?: number | -1;
+}
+interface FilterOption {
+    name: string;
+    label: string;
+    value: any;
+}
+/***
+ * @param {object} Filters [{name:'',options:{}},{...}]
+ */
+export declare function applyFilter(datum: Entry1D | Entry2D, filters?: BaseFilter[], options?: ApplyFilterOptions): void;
+export declare function lookupForFilter(datum: Entry1D | Entry2D, filterName: string): Filter | undefined;
+export declare function reapplyFilters(datum: Entry1D | Entry2D, filters?: Filter[]): void;
+export declare function enableFilter(datum: Entry1D | Entry2D, id: string | null, checked: boolean | null, filters?: Filter[]): void;
+export declare function deleteFilter(datum: Entry1D | Entry2D, id?: string): void;
+interface AddFilterOptions {
+    filterIndex?: number;
+    isDeleteAllow?: boolean;
+}
+export declare function addFilter(datum: Entry1D | Entry2D, filterOptions: FilterOption, options?: AddFilterOptions): void;
+export {};

package/lib/datum/FiltersManager.js

@@ -0,0 +1,184 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.addFilter = exports.deleteFilter = exports.enableFilter = exports.reapplyFilters = exports.lookupForFilter = exports.applyFilter = void 0;
+const uuid_1 = require("@lukeed/uuid");
+const cloneData1D_1 = require("../utilities/cloneData1D");
+const cloneData2D_1 = require("../utilities/cloneData2D");
+const Filters_1 = require("./Filters");
+const updateIntegrals_1 = require("./data1d/utils/updateIntegrals");
+const updatePeaks_1 = require("./data1d/utils/updatePeaks");
+const updateRanges_1 = require("./data1d/utils/updateRanges");
+const updateZones_1 = require("./data2d/utils/updateZones");
+function resetDataToOrigin(datum) {
+    datum.data =
+        datum.info.dimension === 1
+            ? (0, cloneData1D_1.cloneData1D)(datum.originalData)
+            : (0, cloneData2D_1.cloneData2D)(datum.originalData);
+    const { originalInfo } = datum;
+    if (originalInfo) {
+        datum.info = { ...originalInfo };
+    }
+}
+// update the the part of the data that affected by applying the filters
+function updateData(datum) {
+    if (datum.info.dimension === 1) {
+        (0, updatePeaks_1.updatePeaks)(datum);
+        (0, updateRanges_1.updateRanges)(datum);
+        (0, updateIntegrals_1.updateIntegrals)(datum);
+    }
+    else if (datum.info.dimension === 2) {
+        (0, updateZones_1.updateZones)(datum);
+    }
+}
+/***
+ * @param {object} Filters [{name:'',options:{}},{...}]
+ */
+function applyFilter(datum, filters = [], options = {}) {
+    const { forceReapply = false, filterIndex } = options;
+    let isReduced = false;
+    for (let filter of filters) {
+        const filterOption = {
+            name: filter.name,
+            label: Filters_1.Filters[filter.name].name,
+            value: filter.value,
+        };
+        const previousFilter = lookupForFilter(datum, filter.name);
+        const isDeleteAllow = 'isDeleteAllow' in filter ? filter.isDeleteAllow : true;
+        if (previousFilter) {
+            const reduceResult = Filters_1.Filters[filter.name].reduce(previousFilter.value, filterOption.value);
+            if (reduceResult.once) {
+                if (!isReduced) {
+                    isReduced = true;
+                }
+                if (reduceResult.reduce != null && reduceResult.reduce !== undefined) {
+                    replaceFilter(datum, previousFilter.id, reduceResult.reduce);
+                }
+            }
+            else {
+                addFilter(datum, filterOption, { isDeleteAllow, filterIndex });
+            }
+        }
+        else {
+            addFilter(datum, filterOption, { isDeleteAllow, filterIndex });
+        }
+    }
+    if (forceReapply) {
+        reapplyFilters(datum);
+    }
+    else if (isReduced) {
+        if (filters.length === 1 && isLastFilter(datum, filters[0].name)) {
+            Filters_1.Filters[filters[0].name].apply(datum, filters[0].value);
+        }
+        else {
+            reapplyFilters(datum);
+        }
+    }
+    else {
+        for (let filter of filters) {
+            Filters_1.Filters[filter.name].apply(datum, filter.value);
+        }
+    }
+    updateData(datum);
+}
+exports.applyFilter = applyFilter;
+function isLastFilter(datum, id) {
+    const index = datum.filters.findIndex((f) => f.name === id);
+    if (datum.filters.length === index + 1) {
+        return true;
+    }
+    return false;
+}
+function lookupForFilter(datum, filterName) {
+    return datum.filters.find((f) => f.name === filterName);
+}
+exports.lookupForFilter = lookupForFilter;
+function reapplyFilters(datum, filters) {
+    const _filters = filters || datum.filters;
+    enableFilter(datum, null, null, _filters);
+}
+exports.reapplyFilters = reapplyFilters;
+// id filter id
+function enableFilter(datum, id, checked, filters) {
+    datum.filters = datum.filters.slice(0);
+    if (id) {
+        datum.filters = datum.filters.map((filter) => {
+            return { ...filter, flag: filter.id === id ? checked : filter.flag };
+        });
+    }
+    resetDataToOrigin(datum);
+    const _filters = filters || datum.filters;
+    for (let filterIndex = 0; filterIndex < _filters.length; filterIndex++) {
+        const filter = datum.filters[filterIndex];
+        datum.filters[filterIndex] = {
+            ...datum.filters[filterIndex],
+        };
+        if (filter.flag) {
+            try {
+                Filters_1.Filters[filter.name].apply(datum, filter.value);
+            }
+            catch (error) {
+                datum.filters[filterIndex] = {
+                    ...datum.filters[filterIndex],
+                    error: error.message,
+                };
+            }
+        }
+    }
+}
+exports.enableFilter = enableFilter;
+function deleteFilter(datum, id) {
+    // delete the specified filter otherwise delete all filters where isDeleteAllow is true
+    datum.filters = datum.filters
+        .slice(0)
+        .filter((filter) => (id ? filter.id !== id : !filter.isDeleteAllow));
+    resetDataToOrigin(datum);
+    for (let i = 0; i < datum.filters.length; i++) {
+        datum.filters[i] = {
+            ...datum.filters[i],
+        };
+        if (datum.filters[i].flag) {
+            const { name, value } = datum.filters[i];
+            try {
+                Filters_1.Filters[name].apply(datum, value);
+            }
+            catch (error) {
+                datum.filters[i] = {
+                    ...datum.filters[i],
+                    error: error.message,
+                };
+            }
+        }
+    }
+    updateData(datum);
+}
+exports.deleteFilter = deleteFilter;
+function addFilter(datum, filterOptions, options = {}) {
+    const { filterIndex, isDeleteAllow = true } = options;
+    const id = (0, uuid_1.v4)();
+    const filter = {
+        ...filterOptions,
+        id,
+        flag: true,
+        isDeleteAllow,
+    };
+    if (typeof filterIndex === 'number' && filterIndex !== -1) {
+        datum.filters = [
+            ...datum.filters.slice(0, filterIndex + 1),
+            filter,
+            ...datum.filters.slice(filterIndex + 1),
+        ];
+    }
+    else {
+        datum.filters.push(filter);
+    }
+}
+exports.addFilter = addFilter;
+function replaceFilter(datum, filterID, value) {
+    // datum.filters = datum.filters.slice(0);
+    const index = datum.filters.findIndex((f) => f.id === filterID);
+    datum.filters[index] = {
+        ...datum.filters[index],
+        value,
+    };
+}
+//# sourceMappingURL=FiltersManager.js.map

package/lib/datum/FiltersManager.js.map

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package/lib/datum/MatrixFilter.d.ts

@@ -0,0 +1,39 @@
+import type { FilterXYType } from 'ml-signal-processing';
+interface BaseField {
+    key: string;
+    level: number;
+    name: string;
+    description: string;
+}
+interface Field<T> extends BaseField {
+    default: T;
+}
+interface LabelField extends BaseField {
+    type: 'label';
+}
+interface SelectField extends Field<any> {
+    type: 'select';
+    choices: any[];
+}
+interface StringField extends Field<string> {
+    type: 'string';
+}
+interface NumberField extends Field<number> {
+    type: 'number';
+}
+interface BooleanField extends Field<boolean> {
+    type: 'boolean';
+}
+type CommonField = SelectField | StringField | NumberField | BooleanField | LabelField;
+interface ListField extends Field<string[]> {
+    type: 'list';
+    properties: Record<string, CommonField>;
+}
+type Properties = ListField | SelectField | StringField | NumberField | BooleanField | LabelField;
+export type MatrixProperties = Record<string, Properties>;
+export interface MatrixFilter {
+    name: FilterXYType['name'];
+    properties: MatrixProperties;
+    options: any;
+}
+export {};