nmr-processing 9.5.0 → 9.5.1-pre.1684857934

package/lib-esm/filters/filter1d/shiftX.js.map

@@ -0,0 +1 @@
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package/lib-esm/filters/filter1d/signalProcessing.js

@@ -0,0 +1,58 @@
+import * as Filters from 'ml-signal-processing';
+export const id = 'signalProcessing';
+export const name = 'Signal processing';
+export const DOMAIN_UPDATE_RULES = {
+    updateXDomain: true,
+    updateYDomain: true,
+};
+export function apply(spectrum, options) {
+    if (!isApplicable(spectrum)) {
+        throw new Error('Signal Processing is not applicable on this data');
+    }
+    spectrum.data = filterXY(spectrum, options);
+}
+export function isApplicable(spectrum) {
+    if (spectrum.info.isFt)
+        return true;
+    return false;
+}
+export function reduce(previousValue, newValue) {
+    return {
+        once: true,
+        reduce: newValue,
+    };
+}
+export function filterXY(spectrum, options) {
+    var _a;
+    let x = spectrum.data.x.slice(0);
+    let cloneX = spectrum.data.x.slice(0);
+    let re = spectrum.data.re.slice(0);
+    let im = (_a = spectrum.data.im) === null || _a === void 0 ? void 0 : _a.slice(0);
+    const filters = options.filters.slice();
+    const { range: { from, to }, numberOfPoints, exclusionsZones: exclusions, } = options;
+    filters.push({
+        name: 'equallySpaced',
+        options: { from, to, numberOfPoints, exclusions },
+        properties: {},
+    });
+    for (const filter of filters) {
+        // eslint-disable-next-line import/namespace
+        const filterFunction = Filters[filter.name];
+        if (!filterFunction) {
+            throw new Error(`Unknown filter: ${filter.name}`);
+        }
+        const filterOptions = (filter === null || filter === void 0 ? void 0 : filter.options) || {};
+        // @ts-expect-error some method have options and some other ones don't have any options
+        const realResult = filterFunction({ x, y: re }, filterOptions);
+        x = realResult.data.x;
+        re = realResult.data.y;
+        if (im) {
+            const imaginaryResult = filterFunction({ x: cloneX, y: im }, 
+            // @ts-expect-error some method have options and some other ones don't have any options
+            filterOptions);
+            im = imaginaryResult.data.y;
+        }
+    }
+    return { x, re, im };
+}
+//# sourceMappingURL=signalProcessing.js.map

package/lib-esm/filters/filter1d/signalProcessing.js.map

@@ -0,0 +1 @@
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package/lib-esm/filters/filter1d/utils/padDataToNextPowerOfTwo.js

@@ -0,0 +1,37 @@
+import { xSequentialFill } from 'ml-spectra-processing';
+export function padDataToNextPowerOfTwo(datum1D, digitalFilterApplied) {
+    const { x, re, im } = datum1D.data;
+    const size = nextPowerOfTwo(x.length);
+    let newRE = new Float64Array(size);
+    let newIM = new Float64Array(size);
+    const pointsToShift = getPointsToShift(datum1D);
+    newRE.set(re.slice(0, size - pointsToShift));
+    newIM.set(im.slice(0, size - pointsToShift));
+    if (pointsToShift > 0 && digitalFilterApplied) {
+        newRE.set(re.slice(re.length - pointsToShift), size - pointsToShift);
+        newIM.set(im.slice(re.length - pointsToShift), size - pointsToShift);
+    }
+    const newX = xSequentialFill({
+        from: x[0],
+        size,
+        step: x[1] - x[0],
+    });
+    datum1D.data = { ...datum1D.data, re: newRE, im: newIM, x: newX };
+}
+function getPointsToShift(datum1D) {
+    var _a;
+    let grpdly = ((_a = datum1D.info) === null || _a === void 0 ? void 0 : _a.digitalFilter) || 0;
+    return grpdly > 0 ? Math.floor(grpdly) : 0;
+}
+function nextPowerOfTwo(n) {
+    if (n === 0)
+        return 1;
+    n--;
+    n |= n >> 1;
+    n |= n >> 2;
+    n |= n >> 4;
+    n |= n >> 8;
+    n |= n >> 16;
+    return n + 1;
+}
+//# sourceMappingURL=padDataToNextPowerOfTwo.js.map

package/lib-esm/filters/filter1d/utils/padDataToNextPowerOfTwo.js.map

@@ -0,0 +1 @@
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package/lib-esm/filters/filter1d/zeroFilling.js

@@ -0,0 +1,62 @@
+export const id = 'zeroFilling';
+export const name = 'Zero Filling';
+export const DOMAIN_UPDATE_RULES = {
+    updateXDomain: true,
+    updateYDomain: false,
+};
+export function apply(datum1D, options) {
+    var _a;
+    if (!isApplicable(datum1D)) {
+        throw new Error('zeroFilling not applicable on this data');
+    }
+    let { nbPoints, factor = 2 } = options;
+    if (!nbPoints) {
+        nbPoints = 2 ** Math.round(Math.log2(datum1D.data.x.length * factor));
+        const filter = datum1D.filters.find((filter) => filter.name === id);
+        if (filter) {
+            filter.value = { nbPoints };
+        }
+    }
+    let digitalFilterApplied = datum1D.filters.some((e) => e.name === 'digitalFilter' && e.flag);
+    let grpdly = ((_a = datum1D.info) === null || _a === void 0 ? void 0 : _a.digitalFilter) || 0;
+    let pointsToShift;
+    if (grpdly > 0 && digitalFilterApplied) {
+        pointsToShift = Math.floor(grpdly);
+    }
+    else {
+        pointsToShift = 0;
+    }
+    const { re, im, x } = datum1D.data;
+    let newRE = new Float64Array(nbPoints);
+    let newIM = new Float64Array(nbPoints);
+    let newX = new Float64Array(nbPoints);
+    const length = Math.min(nbPoints, re.length);
+    newRE.set(re.slice(0, length - pointsToShift));
+    newIM.set(im.slice(0, length - pointsToShift));
+    newX.set(x.slice(0, length - pointsToShift));
+    let diff = x[1] - x[0];
+    let currentX = x[length - pointsToShift - 1];
+    for (let i = length - pointsToShift; i < nbPoints; i++) {
+        currentX += diff;
+        newX[i] = currentX;
+    }
+    if (pointsToShift > 0 && pointsToShift < nbPoints) {
+        newRE.set(re.slice(re.length - pointsToShift), nbPoints - pointsToShift);
+        newIM.set(im.slice(re.length - pointsToShift), nbPoints - pointsToShift);
+    }
+    datum1D.data = { ...datum1D.data, re: newRE, im: newIM, x: newX };
+}
+export function isApplicable(datum1D) {
+    if (datum1D.info.isComplex && datum1D.info.isFid) {
+        return true;
+    }
+    return false;
+}
+export function reduce(_previousValue, newValue) {
+    delete newValue.factor;
+    return {
+        once: true,
+        reduce: newValue,
+    };
+}
+//# sourceMappingURL=zeroFilling.js.map

package/lib-esm/filters/filter1d/zeroFilling.js.map

@@ -0,0 +1 @@
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package/lib-esm/filters/filter2d/shiftX.js

@@ -0,0 +1,24 @@
+export const id = 'shift2DX';
+export const name = 'Shift 2D X';
+/**
+ *
+ * @param {Object} datum2d
+ * @param {number} [shiftValue=0]
+ */
+export function apply(datum2D, shiftValue = 0) {
+    const data = { ...datum2D.data };
+    for (const key in data) {
+        data[key].minX += shiftValue;
+        data[key].maxX += shiftValue;
+    }
+}
+export function isApplicable() {
+    return true;
+}
+export function reduce(previousValue, newValue) {
+    return {
+        once: true,
+        reduce: previousValue + newValue,
+    };
+}
+//# sourceMappingURL=shiftX.js.map

package/lib-esm/filters/filter2d/shiftX.js.map

@@ -0,0 +1 @@
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package/lib-esm/filters/filter2d/shiftY.js

@@ -0,0 +1,24 @@
+export const id = 'shift2DY';
+export const name = 'Shift 2D Y';
+/**
+ *
+ * @param {Object} datum2d
+ * @param {number} [shiftValue=0]
+ */
+export function apply(datum2D, shiftValue = 0) {
+    const data = { ...datum2D.data };
+    for (const key in data) {
+        data[key].minY += shiftValue;
+        data[key].maxY += shiftValue;
+    }
+}
+export function isApplicable() {
+    return true;
+}
+export function reduce(previousValue, newValue) {
+    return {
+        once: true,
+        reduce: previousValue + newValue,
+    };
+}
+//# sourceMappingURL=shiftY.js.map

package/lib-esm/filters/filter2d/shiftY.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"shiftY.js","sourceRoot":"","sources":["../../../src/filters/filter2d/shiftY.ts"],"names":[],"mappings":"AAIA,MAAM,CAAC,MAAM,EAAE,GAAG,UAAU,CAAC;AAC7B,MAAM,CAAC,MAAM,IAAI,GAAG,YAAY,CAAC;AACjC;;;;GAIG;AACH,MAAM,UAAU,KAAK,CAAC,OAAgB,EAAE,UAAU,GAAG,CAAC;IACpD,MAAM,IAAI,GAAkC,EAAE,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC;IAChE,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE;QACtB,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,IAAI,UAAU,CAAC;QAC7B,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,IAAI,UAAU,CAAC;KAC9B;AACH,CAAC;AAED,MAAM,UAAU,YAAY;IAC1B,OAAO,IAAI,CAAC;AACd,CAAC;AAED,MAAM,UAAU,MAAM,CAAC,aAAqB,EAAE,QAAgB;IAC5D,OAAO;QACL,IAAI,EAAE,IAAI;QACV,MAAM,EAAE,aAAa,GAAG,QAAQ;KACjC,CAAC;AACJ,CAAC"}

package/lib-esm/index.js

@@ -32,6 +32,7 @@ export * from './xy/xyPeaksOptimization';
 export * from './xyz/xyzAutoZonesPicking';
 export * from './xyz/xyzAutoSignalsPicking';
 export * from './xyz/xyzJResAnalyzer';
+export * from './xyz/xyzBidimensionalFFT';
 export * from './databases/getDatabase';
 export * from './databases/carbonImpurities';
 export * from './databases/protonImpurities';
@@ -44,4 +45,5 @@ export * from './multiplicity/splitPatterns';
 export * from './multiplicity/checkMultiplet';
 export * from './multiplicity/checkMultiplicity';
 export * from './multiplicity/translateMultiplet';
+export * from './filters/FiltersManager';
 //# sourceMappingURL=index.js.map

package/lib-esm/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,8BAA8B,CAAC;AAE7C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,mBAAmB,CAAC;AAClC,cAAc,kBAAkB,CAAC;AAEjC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,0BAA0B,CAAC;AACzC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,gCAAgC,CAAC;AAE/C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,gCAAgC,CAAC;AAC/C,cAAc,6BAA6B,CAAC;AAE5C,cAAc,sBAAsB,CAAC;AACrC,cAAc,qBAAqB,CAAC;AAEpC,cAAc,2BAA2B,CAAC;AAC1C,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,2BAA2B,CAAC;AAC1C,cAAc,wBAAwB,CAAC;AACvC,cAAc,8BAA8B,CAAC;AAE7C,cAAc,uBAAuB,CAAC;AACtC,cAAc,6BAA6B,CAAC;AAC5C,cAAc,0BAA0B,CAAC;AACzC,cAAc,8BAA8B,CAAC;AAE7C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AACzC,cAAc,0BAA0B,CAAC;AAEzC,cAAc,2BAA2B,CAAC;AAC1C,cAAc,6BAA6B,CAAC;AAC5C,cAAc,uBAAuB,CAAC;AAEtC,cAAc,yBAAyB,CAAC;AACxC,cAAc,8BAA8B,CAAC;AAC7C,cAAc,8BAA8B,CAAC;AAE7C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAE3C,cAAc,2BAA2B,CAAC;AAE1C,cAAc,kCAAkC,CAAC;AAEjD,cAAc,8BAA8B,CAAC;AAC7C,cAAc,8BAA8B,CAAC;AAC7C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kCAAkC,CAAC;AACjD,cAAc,mCAAmC,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,8BAA8B,CAAC;AAE7C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,mBAAmB,CAAC;AAClC,cAAc,kBAAkB,CAAC;AAEjC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,0BAA0B,CAAC;AACzC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,gCAAgC,CAAC;AAE/C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,gCAAgC,CAAC;AAC/C,cAAc,6BAA6B,CAAC;AAE5C,cAAc,sBAAsB,CAAC;AACrC,cAAc,qBAAqB,CAAC;AAEpC,cAAc,2BAA2B,CAAC;AAC1C,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,2BAA2B,CAAC;AAC1C,cAAc,wBAAwB,CAAC;AACvC,cAAc,8BAA8B,CAAC;AAE7C,cAAc,uBAAuB,CAAC;AACtC,cAAc,6BAA6B,CAAC;AAC5C,cAAc,0BAA0B,CAAC;AACzC,cAAc,8BAA8B,CAAC;AAE7C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AACzC,cAAc,0BAA0B,CAAC;AAEzC,cAAc,2BAA2B,CAAC;AAC1C,cAAc,6BAA6B,CAAC;AAC5C,cAAc,uBAAuB,CAAC;AACtC,cAAc,2BAA2B,CAAC;AAE1C,cAAc,yBAAyB,CAAC;AACxC,cAAc,8BAA8B,CAAC;AAC7C,cAAc,8BAA8B,CAAC;AAE7C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAE3C,cAAc,2BAA2B,CAAC;AAE1C,cAAc,kCAAkC,CAAC;AAEjD,cAAc,8BAA8B,CAAC;AAC7C,cAAc,8BAA8B,CAAC;AAC7C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kCAAkC,CAAC;AACjD,cAAc,mCAAmC,CAAC;AAElD,cAAc,0BAA0B,CAAC"}

package/lib-esm/utilities/checkData2DFid.js

@@ -0,0 +1,6 @@
+export function checkData2DFid(data) {
+    if (!('re' in data && 'im' in data)) {
+        throw new Error('imaginary (im) data should exists');
+    }
+}
+//# sourceMappingURL=checkData2DFid.js.map

package/lib-esm/utilities/checkData2DFid.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"checkData2DFid.js","sourceRoot":"","sources":["../../src/utilities/checkData2DFid.ts"],"names":[],"mappings":"AAGA,MAAM,UAAU,cAAc,CAC5B,IAAY;IAEZ,IAAI,CAAC,CAAC,IAAI,IAAI,IAAI,IAAI,IAAI,IAAI,IAAI,CAAC,EAAE;QACnC,MAAM,IAAI,KAAK,CAAC,mCAAmC,CAAC,CAAC;KACtD;AACH,CAAC"}

package/lib-esm/utilities/cloneData1D.js

@@ -0,0 +1,5 @@
+export function cloneData1D(datum) {
+    const { x, re, im } = datum || { x: [], re: [], im: [] };
+    return { x: x.slice(), re: re.slice(), im: (im === null || im === void 0 ? void 0 : im.slice()) || null };
+}
+//# sourceMappingURL=cloneData1D.js.map

package/lib-esm/utilities/cloneData1D.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"cloneData1D.js","sourceRoot":"","sources":["../../src/utilities/cloneData1D.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,WAAW,CAAC,KAAa;IACvC,MAAM,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,GAAG,KAAK,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC;IACzD,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,KAAK,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,KAAK,EAAE,EAAE,EAAE,EAAE,CAAA,EAAE,aAAF,EAAE,uBAAF,EAAE,CAAE,KAAK,EAAE,KAAI,IAAI,EAAE,CAAC;AACnE,CAAC"}

package/lib-esm/utilities/cloneData2D.js

@@ -0,0 +1,24 @@
+export function cloneData2D(data) {
+    const newData = {};
+    if (isData2DFt(data)) {
+        for (const key in data) {
+            addCloneData(newData, key, data[key]);
+        }
+    }
+    else {
+        for (const key in data) {
+            addCloneData(newData, key, data[key]);
+        }
+    }
+    return newData;
+}
+function isData2DFt(data) {
+    return 're' in data;
+}
+function addCloneData(newData, key, data) {
+    if (data) {
+        const { z, ...other } = data;
+        newData[key] = { z: z.slice(), ...other };
+    }
+}
+//# sourceMappingURL=cloneData2D.js.map

package/lib-esm/utilities/cloneData2D.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"cloneData2D.js","sourceRoot":"","sources":["../../src/utilities/cloneData2D.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,WAAW,CAAC,IAAY;IACtC,MAAM,OAAO,GAAQ,EAAE,CAAC;IAExB,IAAI,UAAU,CAAC,IAAI,CAAC,EAAE;QACpB,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE;YACtB,YAAY,CAAC,OAAO,EAAE,GAAG,EAAE,IAAI,CAAC,GAAqB,CAAC,CAAC,CAAC;SACzD;KACF;SAAM;QACL,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE;YACtB,YAAY,CAAC,OAAO,EAAE,GAAG,EAAE,IAAI,CAAC,GAAsB,CAAC,CAAC,CAAC;SAC1D;KACF;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,SAAS,UAAU,CAAC,IAAY;IAC9B,OAAO,IAAI,IAAI,IAAI,CAAC;AACtB,CAAC;AAED,SAAS,YAAY,CAAC,OAAY,EAAE,GAAW,EAAE,IAAoB;IACnE,IAAI,IAAI,EAAE;QACR,MAAM,EAAE,CAAC,EAAE,GAAG,KAAK,EAAE,GAAG,IAAI,CAAC;QAC7B,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,KAAK,EAAE,EAAE,GAAG,KAAK,EAAE,CAAC;KAC3C;AACH,CAAC"}

package/lib-esm/xyz/Entry2D.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=Entry2D.js.map

package/lib-esm/xyz/Entry2D.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Entry2D.js","sourceRoot":"","sources":["../../src/xyz/Entry2D.ts"],"names":[],"mappings":""}

package/lib-esm/xyz/quadrature.js

@@ -0,0 +1,50 @@
+import { xAdd, xMultiply, xSubtract } from 'ml-spectra-processing';
+import { checkData2DFid } from '../utilities/checkData2DFid';
+export function quadrature(data, options) {
+    checkData2DFid(data);
+    const { fnMode } = options;
+    switch (fnMode) {
+        case 'ttpi':
+            return ttpiQuadrature(data);
+        case 'states':
+            return shrQuadrature(data);
+        case 'echo':
+            return echoQuadrature(data);
+        default:
+            return {
+                re: data.re.z,
+                im: data.im.z,
+            };
+    }
+}
+function echoQuadrature(data) {
+    const { re: { z: reMatrix }, im: { z: imMatrix }, } = data;
+    const newRe = [];
+    const newIm = [];
+    for (let i = 0; i < reMatrix.length; i += 2) {
+        let reCosine = reMatrix[i];
+        let imCosine = imMatrix[i];
+        let reSine = reMatrix[i + 1];
+        let imSine = imMatrix[i + 1];
+        newRe.push(xSubtract(xMultiply(imSine, -1), imCosine));
+        newRe.push(xSubtract(reSine, reCosine));
+        newIm.push(xAdd(reSine, reCosine));
+        newIm.push(xSubtract(imSine, imCosine));
+    }
+    return { re: newRe, im: newIm };
+}
+function shrQuadrature(data) {
+    const { re, im } = data;
+    return { re: re.z, im: im.z };
+}
+function ttpiQuadrature(data) {
+    const newRe = [];
+    const newIm = [];
+    const { re: { z: reMatrix }, im: { z: imMatrix }, } = data;
+    for (let i = 0; i < reMatrix.length; i++) {
+        newRe.push(i % 2 ? reMatrix[i].slice() : xMultiply(reMatrix[i], -1));
+        newIm.push(i % 2 ? imMatrix[i].slice() : xMultiply(imMatrix[i], -1));
+    }
+    return { re: newRe, im: newIm };
+}
+//# sourceMappingURL=quadrature.js.map

package/lib-esm/xyz/quadrature.js.map

@@ -0,0 +1 @@
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package/lib-esm/xyz/util/fft2d/digitalFilter.js

@@ -0,0 +1,16 @@
+export function digitalFilter(data, options) {
+    let { digitalFilterValue = 0 } = options;
+    let re = new Float64Array(data.re);
+    let im = new Float64Array(data.im);
+    let pointsToShift = Math.floor(digitalFilterValue);
+    const skip = 0;
+    pointsToShift += 0;
+    const newRe = new Float64Array(re.length);
+    const newIm = new Float64Array(im.length);
+    newRe.set(re.slice(pointsToShift));
+    newRe.set(re.slice(skip, pointsToShift), re.length - pointsToShift);
+    newIm.set(im.slice(pointsToShift));
+    newIm.set(im.slice(skip, pointsToShift), im.length - pointsToShift);
+    return { re: newRe, im: newIm };
+}
+//# sourceMappingURL=digitalFilter.js.map

package/lib-esm/xyz/util/fft2d/digitalFilter.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"digitalFilter.js","sourceRoot":"","sources":["../../../../src/xyz/util/fft2d/digitalFilter.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,aAAa,CAC3B,IAAc,EACd,OAAuC;IAEvC,IAAI,EAAE,kBAAkB,GAAG,CAAC,EAAE,GAAG,OAAO,CAAC;IACzC,IAAI,EAAE,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACnC,IAAI,EAAE,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEnC,IAAI,aAAa,GAAG,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC;IAEnD,MAAM,IAAI,GAAG,CAAC,CAAC;IACf,aAAa,IAAI,CAAC,CAAC;IAEnB,MAAM,KAAK,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC;IAC1C,MAAM,KAAK,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC;IAC1C,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC;IACnC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,aAAa,CAAC,EAAE,EAAE,CAAC,MAAM,GAAG,aAAa,CAAC,CAAC;IACpE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC;IACnC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,aAAa,CAAC,EAAE,EAAE,CAAC,MAAM,GAAG,aAAa,CAAC,CAAC;IAEpE,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,CAAC;AAClC,CAAC"}

package/lib-esm/xyz/util/fft2d/fftDirectDimension.js

@@ -0,0 +1,50 @@
+import Matrix from 'ml-matrix';
+import { reimAutoPhaseCorrection, reimFFT, reimPhaseCorrection, } from 'ml-spectra-processing';
+import { apodization, } from '../../../apodization/apodization';
+import { digitalFilter } from './digitalFilter';
+import { removeDCOffset } from './removeDCOffset';
+import { zeroFilling } from './zeroFilling';
+export function fftDirectDimension(data, options) {
+    const { re: reData, im: imData } = data;
+    const nbRows = reData.length;
+    const nbColumns = reData[0].length;
+    const { zeroFilling: zeroFillingF2, digitalFilterValue = 0 } = options;
+    const { factor: f2Factor = 2 } = zeroFillingF2 || {};
+    const nbPointsF2 = (zeroFillingF2 === null || zeroFillingF2 === void 0 ? void 0 : zeroFillingF2.nbPoints) || 2 ** Math.round(Math.log2(nbColumns * f2Factor));
+    const reFFT = new Matrix(nbRows, nbPointsF2);
+    const imFFT = new Matrix(nbRows, nbPointsF2);
+    const { apodization: apodizationF2 } = options;
+    let { ph0: ph0F2, ph1: ph1F2, mode: pcModeF2 = 'no', } = (options === null || options === void 0 ? void 0 : options.phaseCorrection) || {};
+    for (let i = 0; i < nbRows; i++) {
+        const newData = digitalFilter({ re: reData[i], im: imData[i] }, { digitalFilterValue });
+        Object.assign(newData, removeDCOffset(newData, { digitalFilterValue }));
+        if (apodizationF2) {
+            const { re: aRe, im: aIm } = apodization(newData, apodizationF2);
+            Object.assign(newData, { re: aRe, im: aIm });
+        }
+        Object.assign(newData, zeroFilling(newData, { digitalFilterValue, nbPoints: nbPointsF2 }));
+        Object.assign(newData, reimFFT(newData, { applyZeroShift: true }));
+        const dfResidual = (digitalFilterValue - Math.round(digitalFilterValue)) * Math.PI * 2;
+        if (dfResidual > 0) {
+            Object.assign(newData, reimPhaseCorrection(newData, 0, -dfResidual));
+        }
+        if (i === 0 &&
+            pcModeF2 === 'pk' &&
+            ph0F2 === undefined &&
+            ph1F2 === undefined) {
+            const phased = reimAutoPhaseCorrection(newData, { magnitudeMode: false });
+            ph0F2 = phased.ph0;
+            ph1F2 = phased.ph1;
+        }
+        if (pcModeF2 === 'pk' && ph0F2 !== undefined && ph1F2 !== undefined) {
+            Object.assign(newData, reimPhaseCorrection(newData, (ph0F2 * Math.PI) / 180, (ph1F2 * Math.PI) / 180));
+        }
+        reFFT.setRow(i, newData.re);
+        imFFT.setRow(i, newData.im);
+    }
+    return {
+        re: reFFT,
+        im: imFFT,
+    };
+}
+//# sourceMappingURL=fftDirectDimension.js.map

package/lib-esm/xyz/util/fft2d/fftDirectDimension.js.map

@@ -0,0 +1 @@
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package/lib-esm/xyz/util/fft2d/fftIndirectDimension.js

@@ -0,0 +1,65 @@
+import Matrix from 'ml-matrix';
+import { reimAbsolute, reimAutoPhaseCorrection, reimFFT, reimPhaseCorrection, } from 'ml-spectra-processing';
+import { apodization, } from '../../../apodization/apodization';
+import { zeroFilling } from './zeroFilling';
+export function fftIndirectDimension(data, options) {
+    var _a;
+    const reData = Matrix.checkMatrix(data.re);
+    const imData = Matrix.checkMatrix(data.im);
+    const nbRows = reData.rows;
+    const nbColumns = reData.columns;
+    const { zeroFilling: zeroFillingF1 } = options;
+    const { factor: f1Factor = 2 } = zeroFillingF1 || {};
+    const nbPointsF1 = (zeroFillingF1 === null || zeroFillingF1 === void 0 ? void 0 : zeroFillingF1.nbPoints) || 2 ** Math.round(Math.log2(nbRows * f1Factor));
+    const { apodization: apodizationF1 } = options;
+    let { ph0: ph0F1, ph1: ph1F1, mode: pcModeF1, } = options.phaseCorrection || {};
+    const reResult = new Matrix(nbPointsF1, nbColumns);
+    const imResult = new Matrix(nbPointsF1, nbColumns);
+    for (let i = 0; i < nbColumns; i++) {
+        const { re: aRe, im: aIm } = apodization({
+            re: reData.getColumn(i),
+            im: imData.getColumn(i),
+        }, apodizationF1);
+        const newRe = [];
+        const newIm = [];
+        if (options.fnMode === 'echo') {
+            for (let j = 0; j < aRe.length; j += 2) {
+                newRe.push(aRe[j]);
+                newIm.push(aRe[j + 1]);
+            }
+        }
+        else {
+            for (let j = 0; j < aRe.length; j++) {
+                newRe.push(aRe[j]);
+                newIm.push(-aIm[j]);
+            }
+        }
+        let transformed = reimFFT(zeroFilling({
+            re: newRe,
+            im: newIm,
+        }, { digitalFilterValue: 0, nbPoints: nbPointsF1 }), { applyZeroShift: true });
+        let { re, im } = transformed;
+        if (((_a = options.phaseCorrection) === null || _a === void 0 ? void 0 : _a.mode) === 'mc') {
+            re = reimAbsolute({ re, im });
+            im = new Float64Array(im.length);
+        }
+        if (pcModeF1 === 'pk') {
+            if (i === 0 && ph0F1 === undefined && ph1F1 === undefined) {
+                //here we can improve it by checking if the experiment is phase sensitive.
+                const phased = reimAutoPhaseCorrection({ re, im }, { magnitudeMode: false });
+                ph0F1 = phased.ph0;
+                ph1F1 = phased.ph1;
+            }
+            if (ph0F1 !== undefined && ph1F1 !== undefined) {
+                Object.assign(transformed, reimPhaseCorrection(transformed, (ph0F1 * Math.PI) / 180, (ph1F1 * Math.PI) / 180));
+            }
+        }
+        reResult.setColumn(i, re);
+        imResult.setColumn(i, im);
+    }
+    return {
+        re: reResult,
+        im: imResult,
+    };
+}
+//# sourceMappingURL=fftIndirectDimension.js.map

package/lib-esm/xyz/util/fft2d/fftIndirectDimension.js.map

@@ -0,0 +1 @@
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package/lib-esm/xyz/util/fft2d/removeDCOffset.js

@@ -0,0 +1,15 @@
+import { xMean } from 'ml-spectra-processing';
+export function removeDCOffset(data, options) {
+    let { digitalFilterValue = 0 } = options;
+    const nbPoints = data.re.length;
+    const newRe = new Float64Array(data.re);
+    const newIm = new Float64Array(data.im);
+    const averageRe = xMean(data.re.slice((nbPoints * 0.75) >> 0, nbPoints - digitalFilterValue));
+    const averageIm = xMean(data.im.slice((nbPoints * 0.75) >> 0, nbPoints - digitalFilterValue));
+    for (let i = digitalFilterValue; i < nbPoints - digitalFilterValue; i++) {
+        newRe[i] -= averageRe;
+        newIm[i] -= averageIm;
+    }
+    return { re: newRe, im: newIm };
+}
+//# sourceMappingURL=removeDCOffset.js.map

package/lib-esm/xyz/util/fft2d/removeDCOffset.js.map

@@ -0,0 +1 @@
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package/lib-esm/xyz/util/fft2d/zeroFilling.js

@@ -0,0 +1,25 @@
+export function zeroFilling(data, options) {
+    let { nbPoints, factor = 2, digitalFilterValue: grpdly = 0 } = options;
+    if (!nbPoints) {
+        nbPoints = 2 ** Math.round(Math.log2(data.re.length * factor));
+    }
+    let pointsToShift;
+    if (grpdly > 0) {
+        pointsToShift = Math.floor(grpdly);
+    }
+    else {
+        pointsToShift = 0;
+    }
+    const { re, im } = data;
+    let newRE = new Float64Array(nbPoints);
+    let newIM = new Float64Array(nbPoints);
+    const length = Math.min(nbPoints, re.length);
+    newRE.set(re.slice(0, length - pointsToShift));
+    newIM.set(im.slice(0, length - pointsToShift));
+    if (pointsToShift > 0 && pointsToShift < nbPoints) {
+        newRE.set(re.slice(re.length - pointsToShift), nbPoints - pointsToShift);
+        newIM.set(im.slice(re.length - pointsToShift), nbPoints - pointsToShift);
+    }
+    return { re: newRE, im: newIM };
+}
+//# sourceMappingURL=zeroFilling.js.map

package/lib-esm/xyz/util/fft2d/zeroFilling.js.map

@@ -0,0 +1 @@
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package/lib-esm/xyz/util/padData.js

@@ -1,4 +1,3 @@
-import Matrix from 'ml-matrix';
 export function padData(spectraData, options) {
     let { minX, maxX, minY, maxY } = spectraData;
     const width = options.width;
@@ -14,14 +13,18 @@ export function padData(spectraData, options) {
         yDiff++;
     let xOffset = xDiff / 2;
     let yOffset = yDiff / 2;
-    let newMatrix = Matrix.zeros(nbSubSpectra + yDiff, nbPoints + xDiff);
+    const newMatrix = [];
+    for (let i = 0; i < nbSubSpectra + yDiff; i++) {
+        newMatrix.push(new Float64Array(nbPoints + xDiff));
+    }
     for (let i = 0; i < nbSubSpectra; i++) {
         for (let j = 0; j < nbPoints; j++) {
-            newMatrix.set(i + yOffset, j + xOffset, spectraData.z[i][j]);
+            newMatrix[i + yOffset].set(spectraData.z[i], xOffset);
         }
     }
     return {
-        z: newMatrix.to2DArray(),
+        ...spectraData,
+        z: newMatrix,
         minX: minX - xOffset * xInterval,
         maxX: maxX + xOffset * xInterval,
         minY: minY - yOffset * yInterval,

package/lib-esm/xyz/util/padData.js.map

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