nlm-memory 0.20.0 → 0.21.0

package/dist/core/storage/sqlite-fact-store.js

@@ -15,6 +15,7 @@
  *         getHistory (supersedence chain inspection)
  *   B.4 — auto-supersedence on (subject, predicate) collision (deferred)
  */
+import { batchWinners } from "./fact-batch.js";
 export class SqliteFactStore {
     db;
     /**
@@ -25,6 +26,7 @@ export class SqliteFactStore {
     constructor(db) {
         this.db = db;
     }
+    cachedInsertStmt;
     async insert(fact) {
         this.insertStmt().run(this.toRow(fact));
     }
@@ -38,19 +40,10 @@ export class SqliteFactStore {
         });
         txn(facts.map((f) => this.toRow(f)));
     }
-    /**
-     * @internal. Sync row insert for use inside an already-open better-sqlite3
-     * transaction. Used only by SqliteSessionStore's inlined ingest blocks
-     * (which require sync execution inside the txn callback). External callers
-     * use insertMany() or ingestSessionFacts() via Storage.withTransaction.
-     */
-    insertRowInTxn(fact) {
-        this.insertStmt().run(this.toRow(fact));
-    }
     async getById(id) {
         const row = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
-                source_quote, created_at, superseded_by, confidence
+                source_quote, created_at, superseded_by, confidence, retired_at
          FROM facts WHERE id = ?`)
             .get(id);
         return row ? this.rowToFact(row) : null;
@@ -61,7 +54,7 @@ export class SqliteFactStore {
         const placeholders = ids.map(() => "?").join(",");
         const rows = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
-                source_quote, created_at, superseded_by, confidence
+                source_quote, created_at, superseded_by, confidence, retired_at
          FROM facts WHERE id IN (${placeholders})`)
             .all(...ids);
         return rows.map((r) => this.rowToFact(r));
@@ -69,7 +62,7 @@ export class SqliteFactStore {
     async findCurrent(subject, predicate) {
         const row = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
-                source_quote, created_at, superseded_by, confidence
+                source_quote, created_at, superseded_by, confidence, retired_at
          FROM facts
          WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND retired_at IS NULL
          ORDER BY created_at DESC
@@ -93,7 +86,7 @@ export class SqliteFactStore {
         params.push(limit);
         const rows = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
-                source_quote, created_at, superseded_by, confidence
+                source_quote, created_at, superseded_by, confidence, retired_at
          FROM facts
          WHERE ${where.join(" AND ")}
          ORDER BY created_at DESC
@@ -104,13 +97,25 @@ export class SqliteFactStore {
     async listBySession(sessionId) {
         const rows = this.db
             .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
-                source_quote, created_at, superseded_by, confidence
+                source_quote, created_at, superseded_by, confidence, retired_at
          FROM facts
          WHERE source_session_id = ?
          ORDER BY created_at ASC`)
             .all(sessionId);
         return rows.map((r) => this.rowToFact(r));
     }
+    async listBySessions(sessionIds, opts) {
+        if (sessionIds.length === 0)
+            return [];
+        const ph = sessionIds.map(() => "?").join(",");
+        const filter = opts?.includeSuperseded === true ? "" : " AND superseded_by IS NULL AND retired_at IS NULL";
+        const rows = this.db
+            .prepare(`SELECT id, kind, subject, predicate, value, source_session_id,
+                source_quote, created_at, superseded_by, confidence, retired_at
+         FROM facts WHERE source_session_id IN (${ph})${filter} ORDER BY created_at ASC`)
+            .all(...sessionIds);
+        return rows.map((r) => this.rowToFact(r));
+    }
     async listForRecall(filter) {
         const where = [];
         const params = [];
@@ -138,7 +143,7 @@ export class SqliteFactStore {
         params.push(limit);
         const sql = `
       SELECT id, kind, subject, predicate, value, source_session_id,
-             source_quote, created_at, superseded_by, confidence
+             source_quote, created_at, superseded_by, confidence, retired_at
       FROM facts
       ${where.length > 0 ? "WHERE " + where.join(" AND ") : ""}
       ORDER BY created_at DESC
@@ -255,6 +260,12 @@ export class SqliteFactStore {
             this.db
                 .prepare("UPDATE facts SET superseded_by = ? WHERE id = ?")
                 .run(newId, oldId);
+            // A superseded fact is recall-ineligible, so its embedding must leave the
+            // ANN index (matching retire()'s behavior) — otherwise it consumes
+            // k-nearest slots and silently reduces effective recall (NLM #351).
+            if (newId !== null) {
+                this.db.prepare("DELETE FROM fact_embeddings WHERE fact_id = ?").run(oldId);
+            }
         });
         txn();
     }
@@ -273,34 +284,74 @@ export class SqliteFactStore {
         txn();
     }
     async ingestSessionFacts(sessionId, facts) {
+        this.ingestSessionFactsInTxn(sessionId, facts);
+    }
+    /**
+     * Sync core of ingestSessionFacts, callable from inside an existing
+     * better-sqlite3 transaction. SINGLE SOURCE OF TRUTH for the replace +
+     * deterministic-collapse + embedding-cleanup logic. The live ingest path
+     * (SqliteSessionStore.insertSession / insertFactsForSession) runs inside its
+     * own sync txn and delegates here, so it can no longer drift from this method.
+     * NLM #351's embedding-ghost (bug 1) and supersedence-cycle (bug 2) fixes
+     * originally landed only here and silently skipped the inlined copies — the
+     * path production actually uses — leaving both bugs live in production.
+     */
+    ingestSessionFactsInTxn(sessionId, facts, scope = null) {
+        // Re-ingesting a session replaces its facts; drop the old facts' embeddings
+        // too, or they orphan in the ANN index as ghosts (NLM #351).
+        const stale = this.db
+            .prepare("SELECT id FROM facts WHERE source_session_id = ?")
+            .all(sessionId);
         this.db.prepare("DELETE FROM facts WHERE source_session_id = ?").run(sessionId);
+        const delStaleEmb = this.db.prepare("DELETE FROM fact_embeddings WHERE fact_id = ?");
+        for (const row of stale)
+            delStaleEmb.run(row.id);
         if (facts.length === 0)
             return;
         const insertStmt = this.insertStmt();
         for (const f of facts)
-            insertStmt.run(this.toRow(f));
+            insertStmt.run(this.toRow(f, scope));
         // Collapse EVERY other active fact for this (subject, predicate) under the
         // new fact, not just the single most-recent prior. A single-prior loop
         // cannot restore the invariant once two priors are already active and
         // leaves the duplicate live forever. See NLM #301.
+        const findSupersededStmt = this.db.prepare(`SELECT id FROM facts WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND id != ?`);
         const markSupersededStmt = this.db.prepare(`UPDATE facts SET superseded_by = ?
        WHERE subject = ? AND predicate = ? AND superseded_by IS NULL AND id != ?`);
-        for (const f of facts) {
+        const delEmbeddingStmt = this.db.prepare("DELETE FROM fact_embeddings WHERE fact_id = ?");
+        // Collapse ONCE per (subject, predicate), under a single winner. Running the
+        // collapse per-fact creates a supersedence CYCLE when a batch carries two
+        // facts for the same (subject, predicate): each supersedes the other, so
+        // both end recall-ineligible forever (NLM #351 bug 2). Last fact in the
+        // batch for a given (subject, predicate) wins; every other active fact —
+        // batch duplicates and prior facts alike — collapses under it.
+        for (const f of batchWinners(facts)) {
+            // Capture which facts this collapse supersedes BEFORE the update, then
+            // drop their embeddings — a superseded fact must not linger in the ANN
+            // index (NLM #351). Same reason markSuperseded/retire delete embeddings.
+            const collapsed = findSupersededStmt.all(f.subject, f.predicate, f.id);
             markSupersededStmt.run(f.id, f.subject, f.predicate, f.id);
+            for (const row of collapsed)
+                delEmbeddingStmt.run(row.id);
         }
     }
     insertStmt() {
-        return this.db.prepare(`
-      INSERT INTO facts (
-        id, kind, subject, predicate, value, source_session_id,
-        source_quote, created_at, superseded_by, confidence
-      ) VALUES (
-        @id, @kind, @subject, @predicate, @value, @source_session_id,
-        @source_quote, @created_at, @superseded_by, @confidence
-      )
-    `);
+        if (!this.cachedInsertStmt) {
+            this.cachedInsertStmt = this.db.prepare(`
+        INSERT INTO facts (
+          id, kind, subject, predicate, value, source_session_id,
+          source_quote, created_at, superseded_by, confidence, retired_at,
+          scope
+        ) VALUES (
+          @id, @kind, @subject, @predicate, @value, @source_session_id,
+          @source_quote, @created_at, @superseded_by, @confidence, @retired_at,
+          @scope
+        )
+      `);
+        }
+        return this.cachedInsertStmt;
     }
-    toRow(fact) {
+    toRow(fact, scope = null) {
         return {
             id: fact.id,
             kind: fact.kind,
@@ -312,6 +363,8 @@ export class SqliteFactStore {
             created_at: fact.createdAt,
             superseded_by: fact.supersededBy,
             confidence: fact.confidence,
+            retired_at: fact.retiredAt ?? null,
+            scope,
         };
     }
     rowToFact(row) {
@@ -326,6 +379,7 @@ export class SqliteFactStore {
             createdAt: row.created_at,
             supersededBy: row.superseded_by,
             confidence: row.confidence,
+            retiredAt: row.retired_at ?? null,
         };
     }
 }

package/dist/core/storage/sqlite-fact-store.js.map

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package/dist/core/storage/sqlite-outcome-store.d.ts

@@ -0,0 +1,89 @@
+/**
+ * SQLite adapters for the outcome rollup ports (`@ports/outcome.js`,
+ * `@core/outcome/rollup.js`) — #352 phase 2 Task 8. No Postgres adapters yet;
+ * `get_session` and `nlm digest` both run against the operator's SQLite
+ * deployment, so parity is deferred until a Postgres-backed caller exists.
+ *
+ * Never selects `sessions.body` — see the incident class noted on
+ * `SqliteSessionStore.getByIds` (48KB/row of session markdown the recall
+ * daemon does not need for this read shape).
+ *
+ * Two entry points:
+ *  - `buildSqliteOutcomeDeps` — per-session `OutcomeDeps` for `get_session`.
+ *    Fine to re-query per call; a single session's evidence is a handful of
+ *    indexed lookups.
+ *  - `loadOutcomeCoverageInput` — one query per evidence type across an
+ *    entire id set, for the digest's Tier-B coverage block. Feeds
+ *    `@core/outcome/coverage.js`'s `computeOutcomeCoverage`, not `deriveOutcome`
+ *    directly.
+ *
+ * `reDerivationPairs` is always `[]` here — measured on the real corpus copy
+ * (~4.6k sessions/42d window), `computeReDerivationRate`
+ * (`@core/metrics/re-derivation.js`) costs ~7s: an N+1 query per session for
+ * entities/decisions, then an O(n^2) pairwise jaccard scan. That blows the
+ * ~2s digest budget and would add multi-second latency to every `get_session`
+ * call. Re-derivation is also the rollup's lowest-precedence, rarest bucket
+ * (9 pairs across the whole corpus at the 42-day window in the same
+ * measurement) — sessions that would have landed there fall back to
+ * `unobserved`, which stays honest rather than silently wrong. Follow-up:
+ * either make `computeReDerivationRate` scale (batch its per-session reads,
+ * bucket by shared entity instead of an O(n^2) scan) or have the existing
+ * 24h corpus-monitor cron persist its pairs (not just the summary rate it
+ * writes today) for these adapters to read instead of recomputing inline.
+ */
+import type Database from "better-sqlite3";
+import type { ReDerivationPair } from "../metrics/re-derivation.js";
+import type { OutcomeCitation, OutcomeCitationReader, OutcomeDeps, OutcomeEdge, OutcomeEdgeReader, OutcomeSession, OutcomeSessionReader, OutcomeSignal, OutcomeSignalReader } from "../../ports/outcome.js";
+export declare class SqliteOutcomeSessionReader implements OutcomeSessionReader {
+    private readonly db;
+    constructor(db: Database.Database);
+    getById(sessionId: string): Promise<OutcomeSession | null>;
+}
+export declare class SqliteOutcomeSignalReader implements OutcomeSignalReader {
+    private readonly db;
+    constructor(db: Database.Database);
+    listForSession(sessionId: string): Promise<ReadonlyArray<OutcomeSignal>>;
+}
+export declare class SqliteOutcomeEdgeReader implements OutcomeEdgeReader {
+    private readonly db;
+    constructor(db: Database.Database);
+    listForSession(sessionId: string): Promise<ReadonlyArray<OutcomeEdge>>;
+}
+/**
+ * Citations live in the append-only JSONL log (`@core/recall/citation-log.js`),
+ * not SQLite — `cite_session` calls are telemetry, not a table. `readCitationLog`
+ * takes a required day-window; passing `Infinity` reads the whole log since
+ * rollup evidence has no expiry.
+ */
+export declare class SqliteOutcomeCitationReader implements OutcomeCitationReader {
+    private readonly logPath?;
+    constructor(logPath?: string | undefined);
+    listForSession(sessionId: string): Promise<ReadonlyArray<OutcomeCitation>>;
+}
+export interface BuildSqliteOutcomeDepsOptions {
+    readonly citationLogPath?: string;
+    readonly now?: () => Date;
+    readonly heldAfterDays?: number;
+}
+/** Per-session OutcomeDeps for `get_session`. Safe to build fresh per call. */
+export declare function buildSqliteOutcomeDeps(db: Database.Database, opts?: BuildSqliteOutcomeDepsOptions): Promise<OutcomeDeps>;
+export interface OutcomeCoverageInput {
+    readonly sessions: ReadonlyArray<OutcomeSession>;
+    readonly signalsBySession: ReadonlyMap<string, ReadonlyArray<OutcomeSignal>>;
+    readonly edgesBySession: ReadonlyMap<string, ReadonlyArray<OutcomeEdge>>;
+    readonly citationsBySession: ReadonlyMap<string, ReadonlyArray<OutcomeCitation>>;
+    /** Always `[]` from `loadOutcomeCoverageInput` — see the module doc comment. */
+    readonly reDerivationPairs: ReadonlyArray<ReDerivationPair>;
+}
+export interface LoadOutcomeCoverageInputOptions {
+    /** ISO timestamp — only sessions with `ended_at >= sinceIso` are included. */
+    readonly sinceIso: string;
+    readonly citationLogPath?: string;
+}
+/**
+ * Batched loader for the digest's Tier-B coverage block: one query per
+ * evidence type across the whole ended-in-window id set, not one query per
+ * session. `computeOutcomeCoverage` (`@core/outcome/coverage.js`) turns this
+ * into per-session verdicts via `deriveOutcome`.
+ */
+export declare function loadOutcomeCoverageInput(db: Database.Database, opts: LoadOutcomeCoverageInputOptions): Promise<OutcomeCoverageInput>;

package/dist/core/storage/sqlite-outcome-store.js

@@ -0,0 +1,158 @@
+/**
+ * SQLite adapters for the outcome rollup ports (`@ports/outcome.js`,
+ * `@core/outcome/rollup.js`) — #352 phase 2 Task 8. No Postgres adapters yet;
+ * `get_session` and `nlm digest` both run against the operator's SQLite
+ * deployment, so parity is deferred until a Postgres-backed caller exists.
+ *
+ * Never selects `sessions.body` — see the incident class noted on
+ * `SqliteSessionStore.getByIds` (48KB/row of session markdown the recall
+ * daemon does not need for this read shape).
+ *
+ * Two entry points:
+ *  - `buildSqliteOutcomeDeps` — per-session `OutcomeDeps` for `get_session`.
+ *    Fine to re-query per call; a single session's evidence is a handful of
+ *    indexed lookups.
+ *  - `loadOutcomeCoverageInput` — one query per evidence type across an
+ *    entire id set, for the digest's Tier-B coverage block. Feeds
+ *    `@core/outcome/coverage.js`'s `computeOutcomeCoverage`, not `deriveOutcome`
+ *    directly.
+ *
+ * `reDerivationPairs` is always `[]` here — measured on the real corpus copy
+ * (~4.6k sessions/42d window), `computeReDerivationRate`
+ * (`@core/metrics/re-derivation.js`) costs ~7s: an N+1 query per session for
+ * entities/decisions, then an O(n^2) pairwise jaccard scan. That blows the
+ * ~2s digest budget and would add multi-second latency to every `get_session`
+ * call. Re-derivation is also the rollup's lowest-precedence, rarest bucket
+ * (9 pairs across the whole corpus at the 42-day window in the same
+ * measurement) — sessions that would have landed there fall back to
+ * `unobserved`, which stays honest rather than silently wrong. Follow-up:
+ * either make `computeReDerivationRate` scale (batch its per-session reads,
+ * bucket by shared entity instead of an O(n^2) scan) or have the existing
+ * 24h corpus-monitor cron persist its pairs (not just the summary rate it
+ * writes today) for these adapters to read instead of recomputing inline.
+ */
+import { readCitationLog } from "../recall/citation-log.js";
+const RELEVANT_EDGE_KINDS = "('supersedes','replaces','continues')";
+export class SqliteOutcomeSessionReader {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    async getById(sessionId) {
+        const row = this.db
+            .prepare("SELECT id, ended_at, status FROM sessions WHERE id = ?")
+            .get(sessionId);
+        if (!row)
+            return null;
+        return { id: row.id, endedAt: row.ended_at, status: row.status };
+    }
+}
+export class SqliteOutcomeSignalReader {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    async listForSession(sessionId) {
+        return this.db
+            .prepare("SELECT id, outcome FROM signals WHERE session_id = ?")
+            .all(sessionId);
+    }
+}
+export class SqliteOutcomeEdgeReader {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    async listForSession(sessionId) {
+        const rows = this.db
+            .prepare(`SELECT from_session, to_session, kind FROM session_edges
+         WHERE to_session = ? AND kind IN ${RELEVANT_EDGE_KINDS}`)
+            .all(sessionId);
+        return rows.map((r) => ({ fromSession: r.from_session, toSession: r.to_session, kind: r.kind }));
+    }
+}
+/**
+ * Citations live in the append-only JSONL log (`@core/recall/citation-log.js`),
+ * not SQLite — `cite_session` calls are telemetry, not a table. `readCitationLog`
+ * takes a required day-window; passing `Infinity` reads the whole log since
+ * rollup evidence has no expiry.
+ */
+export class SqliteOutcomeCitationReader {
+    logPath;
+    constructor(logPath) {
+        this.logPath = logPath;
+    }
+    async listForSession(sessionId) {
+        const entries = this.logPath !== undefined
+            ? await readCitationLog(Number.POSITIVE_INFINITY, this.logPath)
+            : await readCitationLog(Number.POSITIVE_INFINITY);
+        return entries.filter((e) => e.citedId === sessionId).map((e) => ({ conversationId: e.conversationId }));
+    }
+}
+/** Per-session OutcomeDeps for `get_session`. Safe to build fresh per call. */
+export async function buildSqliteOutcomeDeps(db, opts = {}) {
+    return {
+        sessions: new SqliteOutcomeSessionReader(db),
+        signals: new SqliteOutcomeSignalReader(db),
+        edges: new SqliteOutcomeEdgeReader(db),
+        citations: new SqliteOutcomeCitationReader(opts.citationLogPath),
+        reDerivationPairs: [],
+        ...(opts.now ? { now: opts.now } : {}),
+        ...(opts.heldAfterDays !== undefined ? { heldAfterDays: opts.heldAfterDays } : {}),
+    };
+}
+/**
+ * Batched loader for the digest's Tier-B coverage block: one query per
+ * evidence type across the whole ended-in-window id set, not one query per
+ * session. `computeOutcomeCoverage` (`@core/outcome/coverage.js`) turns this
+ * into per-session verdicts via `deriveOutcome`.
+ */
+export async function loadOutcomeCoverageInput(db, opts) {
+    const sessionRows = db
+        .prepare(`SELECT id, ended_at, status FROM sessions
+       WHERE ended_at IS NOT NULL AND ended_at >= ?
+       ORDER BY ended_at DESC`)
+        .all(opts.sinceIso);
+    const sessions = sessionRows.map((r) => ({
+        id: r.id,
+        endedAt: r.ended_at,
+        status: r.status,
+    }));
+    const signalsBySession = new Map();
+    const edgesBySession = new Map();
+    const citationsBySession = new Map();
+    if (sessions.length > 0) {
+        const ids = sessions.map((s) => s.id);
+        const placeholders = ids.map(() => "?").join(",");
+        const signalRows = db
+            .prepare(`SELECT session_id, id, outcome FROM signals WHERE session_id IN (${placeholders})`)
+            .all(...ids);
+        for (const r of signalRows) {
+            const list = signalsBySession.get(r.session_id) ?? [];
+            list.push({ id: r.id, outcome: r.outcome });
+            signalsBySession.set(r.session_id, list);
+        }
+        const edgeRows = db
+            .prepare(`SELECT from_session, to_session, kind FROM session_edges
+         WHERE to_session IN (${placeholders}) AND kind IN ${RELEVANT_EDGE_KINDS}`)
+            .all(...ids);
+        for (const r of edgeRows) {
+            const list = edgesBySession.get(r.to_session) ?? [];
+            list.push({ fromSession: r.from_session, toSession: r.to_session, kind: r.kind });
+            edgesBySession.set(r.to_session, list);
+        }
+        const idSet = new Set(ids);
+        const citationEntries = opts.citationLogPath !== undefined
+            ? await readCitationLog(Number.POSITIVE_INFINITY, opts.citationLogPath)
+            : await readCitationLog(Number.POSITIVE_INFINITY);
+        for (const entry of citationEntries) {
+            if (!idSet.has(entry.citedId))
+                continue;
+            const list = citationsBySession.get(entry.citedId) ?? [];
+            list.push({ conversationId: entry.conversationId });
+            citationsBySession.set(entry.citedId, list);
+        }
+    }
+    return { sessions, signalsBySession, edgesBySession, citationsBySession, reDerivationPairs: [] };
+}
+//# sourceMappingURL=sqlite-outcome-store.js.map

package/dist/core/storage/sqlite-outcome-store.js.map

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package/dist/core/storage/sqlite-session-store.d.ts

@@ -7,12 +7,12 @@
  * of core depends on the SessionStore *port*, never on this file.
  *
  * Schema parity with the Python daemon: sessions row + session_entities +
- * markers + session_embeddings (vec0). Idle-status overlay (computed from
- * transcript mtime) is deferred to a later phase — A.2 returns the persisted
- * status verbatim.
+ * markers + session_embedding_chunks (vec0). Idle-status overlay (computed
+ * from transcript mtime) is deferred to a later phase; A.2 returns the
+ * persisted status verbatim.
  */
 import Database from "better-sqlite3";
-import type { KeywordNeighbor, SearchOptions, SemanticNeighbor, SessionFilter, SessionStore } from "../../ports/session-store.js";
+import type { KeywordNeighbor, SearchOptions, SemanticNeighbor, SessionStore } from "../../ports/session-store.js";
 import type { Session, SessionStatus, SessionEdgeKind } from "../../shared/types.js";
 import type { Fact } from "../../shared/types.js";
 import type { SqliteFactStore } from "./sqlite-fact-store.js";
@@ -40,6 +40,31 @@ export interface IngestRecord {
     readonly entities: ReadonlyArray<string>;
     readonly decisions: ReadonlyArray<string>;
     readonly openQuestions: ReadonlyArray<string>;
+    readonly classifier?: {
+        readonly provider: string;
+        readonly model: string;
+        readonly confidence: number;
+    };
+    readonly scope: string | null;
+    /**
+     * Subagent persona slug / "orchestrator" / runtime name, or the runtime
+     * name for non-claude-code runtimes. Optional: callers with no chunk to
+     * derive from (reprocess, reclassify-oversized) omit it and COALESCE in
+     * the upsert preserves whatever a prior classify-time stamp wrote.
+     */
+    readonly agentPersona?: string | null;
+    /** RUNTIME parent session id (join key against runtime_session_id). Same omit/COALESCE contract as agentPersona. */
+    readonly parentSessionId?: string | null;
+    /**
+     * Majority model across assistant messages in the transcript (claude-code
+     * jsonl only, v1), from scanTranscriptDerivables. NULL when not derivable.
+     * Same omit/COALESCE contract as agentPersona.
+     */
+    readonly primaryModel?: string | null;
+    /** Sum of input_tokens + output_tokens across assistant messages. Same omit/COALESCE contract as agentPersona. */
+    readonly totalTokens?: number | null;
+    /** Slug of the first Skill-tool invocation in the transcript, or null. Same omit/COALESCE contract as agentPersona. */
+    readonly skill?: string | null;
 }
 /**
  * Supersedence target for insertSession. `kind` selects the relation:
@@ -87,6 +112,8 @@ export interface BackfillCandidate {
 }
 export declare class SqliteSessionStore implements SessionStore {
     private readonly db;
+    private overlayCache;
+    private overlayCacheAt;
     /**
      * @internal. Construct via SqliteStorage.create(...) instead. Direct
      * construction is preserved for the SqliteStorage adapter only; all
@@ -104,6 +131,8 @@ export declare class SqliteSessionStore implements SessionStore {
     /** Raw db handle for ingest helpers (Scheduler, scanOnce). Avoid using
      *  directly from the recall path — it bypasses the SessionStore port. */
     rawDb(): Database.Database;
+    invalidateOverlayCache(): void;
+    private overlay;
     /** Recently-written sessions ordered by created_at desc. Powers /live Writes column. */
     recentWrites(limit: number): RecentWrite[];
     /** Recently-extracted markers ordered by session created_at desc. Powers /live Decisions column. */
@@ -112,8 +141,9 @@ export declare class SqliteSessionStore implements SessionStore {
      * Atomic ingest: writes the session row, markers, entity rows + links,
      * supersedes edge (if any), and the embedding (best-effort) in one
      * transaction. Idempotent on re-ingest — ON CONFLICT updates the session
-     * in place; markers are deleted and rewritten; entity links use INSERT OR
-     * IGNORE; embedding row is DELETE+INSERT (vec0 doesn't UPDATE).
+     * in place; markers are deleted and rewritten; entity links are replaced
+     * (DELETE + re-insert, session_count recomputed exactly); embedding row is
+     * DELETE+INSERT (vec0 doesn't UPDATE).
      *
      * Mirrors Python's SQLiteStore.insert_session. Markdown projection is not
      * yet ported and skipped here.
@@ -149,7 +179,6 @@ export declare class SqliteSessionStore implements SessionStore {
      * failures don't abort the batch, and never affect committed fact rows.
      */
     private embedFacts;
-    list(filter?: SessionFilter): Promise<ReadonlyArray<Session>>;
     getById(sessionId: string): Promise<Session | null>;
     /**
      * Batched session fetch for the recall path. Deliberately omits the
@@ -158,6 +187,7 @@ export declare class SqliteSessionStore implements SessionStore {
      * daemon. Resolved sessions carry `body: ""`.
      */
     getByIds(ids: ReadonlyArray<string>): Promise<ReadonlyArray<Session>>;
+    listByDateRange(fromIso: string, toIso: string): Promise<ReadonlyArray<Session>>;
     semanticSearch(queryVector: Float32Array, limit: number, opts?: SearchOptions): Promise<ReadonlyArray<SemanticNeighbor>>;
     /**
      * Lexical recall via the sessions_fts FTS5 index. BM25 column weights
@@ -170,6 +200,11 @@ export declare class SqliteSessionStore implements SessionStore {
     resolveSuccessors(ids: ReadonlyArray<string>): Promise<Map<string, string>>;
     updateStatus(sessionId: string, status: SessionStatus): Promise<void>;
     markSuperseded(predecessorId: string, successorId: string): Promise<void>;
+    getSessionScopeById(id: string): Promise<string | null>;
+    setWorkstreamBinding(sessionId: string, workstreamId: string | null, source: import("../workstream/model.js").BindingSource | null, confidence: number | null): Promise<void>;
+    listSessionIdsByWorkstreams(workstreamIds: ReadonlyArray<string>): Promise<ReadonlyArray<string>>;
+    getEntities(sessionId: string): Promise<ReadonlyArray<string>>;
+    getWorkstreamIds(sessionIds: ReadonlyArray<string>): Promise<Map<string, string | null>>;
     /** @internal test-only helper; production callers use insertSession(). */
     insertSessionForTest(session: Session): void;
     insertEdgeForTest(fromSession: string, toSession: string, kind?: "supersedes" | "continues"): void;