mrplex 0.0.1

package/dist/storage-sqlite/compile-filter.js.map

@@ -0,0 +1 @@
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package/dist/storage-sqlite/compile-sqlite.d.ts

@@ -0,0 +1,19 @@
+/**
+ * SearchPlan → SQLite SQL compiler (m5-plan WS2).
+ *
+ * The kernel builds a `SearchPlan` (parsed CEL AST + scope groups +
+ * per-repo sigil groups + optional FTS text + optional candidate ids +
+ * limit). The SQLite adapter compiles that plan into one prepared
+ * statement — CEL filter + scope regex over the RE2-backed regexp UDF +
+ * sigil `NOT LIKE` + FTS5 MATCH + `IN (…)` whitelist + ORDER BY / LIMIT.
+ *
+ * All user values land as positional `?` placeholders. The compiler
+ * appends parameters in the order they appear in the emitted SQL text so
+ * SQLite's positional binding matches.
+ */
+import type { SearchPlan } from "../storage/search-plan.js";
+export type CompiledSql = {
+    sql: string;
+    params: (string | number | bigint | null)[];
+};
+export declare function compileSearchPlan(plan: SearchPlan): CompiledSql;

package/dist/storage-sqlite/compile-sqlite.js

@@ -0,0 +1,176 @@
+/**
+ * SearchPlan → SQLite SQL compiler (m5-plan WS2).
+ *
+ * The kernel builds a `SearchPlan` (parsed CEL AST + scope groups +
+ * per-repo sigil groups + optional FTS text + optional candidate ids +
+ * limit). The SQLite adapter compiles that plan into one prepared
+ * statement — CEL filter + scope regex over the RE2-backed regexp UDF +
+ * sigil `NOT LIKE` + FTS5 MATCH + `IN (…)` whitelist + ORDER BY / LIMIT.
+ *
+ * All user values land as positional `?` placeholders. The compiler
+ * appends parameters in the order they appear in the emitted SQL text so
+ * SQLite's positional binding matches.
+ */
+import { globToRegexSource } from "../kernel/auth/glob.js";
+import { compileFilter } from "./compile-filter.js";
+export function compileSearchPlan(plan) {
+    const params = [];
+    const clauses = ["versions.next_id IS NULL"];
+    // repo_id IN (…) — repo scope, always present (kernel guarantees non-empty).
+    const repoPh = plan.repo_ids.map(() => "?").join(",");
+    clauses.push(`versions.repo_id IN (${repoPh})`);
+    for (const id of plan.repo_ids)
+        params.push(id);
+    // Optional CEL filter. Graph predicates ($in_static etc.) need to apply
+    // the caller's visibility filter — BOTH read scope AND sigil-exclusion —
+    // to the OTHER endpoint of an edge (§11.2 "visible graph = readable
+    // graph"), so hand the filter compiler builders bound to this plan.
+    if (plan.filter_ast) {
+        const compiled = compileFilter(plan.filter_ast, {
+            graphScope: (alias) => scopeFragmentForAlias(plan.scope, alias),
+            graphSigils: (alias) => compileSigilExclusion(plan.sigils, alias),
+        });
+        clauses.push(`(${compiled.sql})`);
+        for (const p of compiled.params)
+            params.push(p);
+    }
+    // Sigil exclusion.
+    const sigilFrag = compileSigilExclusion(plan.sigils, "versions");
+    if (sigilFrag.sql.length > 0) {
+        clauses.push(sigilFrag.sql);
+        for (const p of sigilFrag.params)
+            params.push(p);
+    }
+    // Scope filter.
+    if (plan.scope.kind === "groups") {
+        const scopeFrag = compileScopeGroups(plan.scope.groups, "versions");
+        if (scopeFrag.sql.length > 0) {
+            clauses.push(`(${scopeFrag.sql})`);
+            for (const p of scopeFrag.params)
+                params.push(p);
+        }
+        else {
+            // No scope grants → no rows (silent-drop per §8.2).
+            clauses.push("0");
+        }
+    }
+    // allow_all: no clause added.
+    // deny_all: caller short-circuits before compiling.
+    // Candidate whitelist (rank branch).
+    if (plan.candidate_ids && plan.candidate_ids.length > 0) {
+        const idPh = plan.candidate_ids.map(() => "?").join(",");
+        clauses.push(`versions.id IN (${idPh})`);
+        for (const id of plan.candidate_ids)
+            params.push(id);
+    }
+    // Candidate DOCUMENT-id whitelist (graph read surface). Restricts to live
+    // versions of these documents so a BFS round's visibility check is one pass.
+    if (plan.candidate_document_ids && plan.candidate_document_ids.length > 0) {
+        const docPh = plan.candidate_document_ids.map(() => "?").join(",");
+        clauses.push(`versions.document_id IN (${docPh})`);
+        for (const id of plan.candidate_document_ids)
+            params.push(id);
+    }
+    const cols = `versions.id, versions.document_id, versions.repo_id,
+                versions.prev_id, versions.next_id, versions.path,
+                versions.frontmatter_raw, versions.frontmatter,
+                versions.body, versions.author, versions.created_at,
+                versions.content_hash`;
+    let sql;
+    if (plan.text !== undefined) {
+        clauses.push("versions.id = fts_docs.rowid");
+        clauses.push("fts_docs MATCH ?");
+        params.push(plan.text);
+        sql = `SELECT ${cols}
+             FROM versions, fts_docs
+             WHERE ${clauses.join(" AND ")}
+             ORDER BY bm25(fts_docs)
+             LIMIT ?`;
+    }
+    else {
+        sql = `SELECT ${cols}
+             FROM versions
+             WHERE ${clauses.join(" AND ")}
+             ORDER BY versions.created_at DESC, versions.id DESC
+             LIMIT ?`;
+    }
+    params.push(plan.limit);
+    return { sql, params };
+}
+function compileSigilExclusion(groups, alias) {
+    const clauses = [];
+    const params = [];
+    for (const group of groups) {
+        if (group.sigils.length === 0)
+            continue;
+        if (group.repo_ids.length === 0)
+            continue;
+        const repoPh = group.repo_ids.map(() => "?").join(",");
+        for (const id of group.repo_ids)
+            params.push(id);
+        const sigilClauses = [];
+        for (const sigil of group.sigils) {
+            const escaped = sigil.replace(/[\\%_]/g, (ch) => `\\${ch}`);
+            sigilClauses.push(`${alias}.path NOT LIKE ? ESCAPE '\\'`);
+            sigilClauses.push(`${alias}.path NOT LIKE ? ESCAPE '\\'`);
+            params.push(`${escaped}%`);
+            params.push(`%/${escaped}%`);
+        }
+        clauses.push(`(${alias}.repo_id NOT IN (${repoPh}) OR (${sigilClauses.join(" AND ")}))`);
+    }
+    if (clauses.length === 0)
+        return { sql: "", params: [] };
+    return { sql: clauses.join(" AND "), params };
+}
+function compileScopeGroups(groups, alias) {
+    const scopeSqls = [];
+    const scopeParams = [];
+    for (const group of groups) {
+        if (group.globs.length === 0)
+            continue;
+        if (group.repos === "*") {
+            const globExpr = globsToLastMatchCaseSql(group.globs, scopeParams, alias);
+            scopeSqls.push(`(${globExpr})`);
+        }
+        else if (group.repos.length > 0) {
+            const ph = group.repos.map(() => "?").join(",");
+            for (const id of group.repos)
+                scopeParams.push(id);
+            const globExpr = globsToLastMatchCaseSql(group.globs, scopeParams, alias);
+            scopeSqls.push(`(${alias}.repo_id IN (${ph}) AND (${globExpr}))`);
+        }
+    }
+    return { sql: scopeSqls.join(" OR "), params: scopeParams };
+}
+function globsToLastMatchCaseSql(globs, params, alias) {
+    let expr = "0";
+    const localParams = [];
+    for (let i = 0; i < globs.length; i++) {
+        const g = globs[i];
+        const negated = g.startsWith("!");
+        const raw = negated ? g.slice(1) : g;
+        const regex = `^${globToRegexSource(raw)}$`;
+        localParams.unshift(regex);
+        expr = `(CASE WHEN regexp(?, ${alias}.path) THEN ${negated ? "0" : "1"} ELSE ${expr} END)`;
+    }
+    for (const p of localParams)
+        params.push(p);
+    return expr;
+}
+/**
+ * Scope predicate for an aliased `versions` row inside a graph subquery
+ * (links-plan.md §5 decision 5 — the visible graph equals the readable
+ * graph). `allow_all` → always true; `deny_all` → always false; `groups`
+ * → the same OR-of-globs the outer query applies, retargeted to `alias`.
+ */
+function scopeFragmentForAlias(scope, alias) {
+    if (scope.kind === "allow_all")
+        return { sql: "1", params: [] };
+    if (scope.kind === "deny_all")
+        return { sql: "0", params: [] };
+    const frag = compileScopeGroups(scope.groups, alias);
+    return frag.sql.length > 0
+        ? { sql: `(${frag.sql})`, params: frag.params }
+        : { sql: "0", params: [] };
+}
+//# sourceMappingURL=compile-sqlite.js.map

package/dist/storage-sqlite/compile-sqlite.js.map

@@ -0,0 +1 @@
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package/dist/storage-sqlite/migrations/0001_init.sql

@@ -0,0 +1,123 @@
+-- mrplex schema (SQLite) — see docs/design.md §3.2.
+--
+-- Fresh no-auth baseline: the pre-noauth migration chain (0001 init, 0002
+-- admin-token flag, 0003 FTS, 0004 casefold, 0005 links) is collapsed into
+-- this single file. There is no users or api_tokens table — mrplex trusts
+-- its caller (design §8); authorship is one opaque string on versions.author.
+-- Pre-noauth databases are refused at open (adapter probes for api_tokens).
+-- Future migrations resume at 0002.
+--
+-- Dialect notes for SQLite:
+--   * JSON columns are TEXT with a CHECK (json_valid(...)) constraint.
+--   * Timestamps are TEXT in ISO 8601 UTC (per §6.4 wire types).
+--   * Case-folded identity runs off derived *_norm columns computed in the
+--     kernel (normalizeKey = NFC + locale-invariant lowercase). Storage stays
+--     case- and form-preserving; the key never crosses the wire (§3.5.1).
+
+create table repos (
+  id          integer primary key,
+  slug        text not null unique,
+  slug_norm   text not null,
+  path_config text check (path_config is null or json_valid(path_config)),
+  link_config text check (link_config is null or json_valid(link_config)),
+  created_at  text not null
+);
+
+-- Case-insensitive slug uniqueness (§3.5.1).
+create unique index repos_slugnorm_uidx on repos(slug_norm);
+
+create table documents (
+  id      integer primary key,
+  repo_id integer not null references repos(id)
+);
+
+create index documents_repo_id_idx on documents(repo_id);
+
+create table versions (
+  id              integer primary key,
+  document_id     integer not null references documents(id),
+  repo_id         integer not null references repos(id),
+  prev_id         integer      references versions(id),
+  next_id         integer      references versions(id),
+  path            text    not null,
+  path_norm       text    not null,
+  frontmatter_raw text    not null,
+  frontmatter     text    not null check (json_valid(frontmatter)),
+  body            text    not null,
+  author          text    not null,            -- opaque caller-supplied string
+  created_at      text    not null
+);
+
+-- exactly one current version per document (design §3.2)
+create unique index versions_document_current_uidx
+  on versions(document_id) where next_id is null;
+
+-- at most one live document per path in a repo (design §3.2)
+create unique index versions_repo_path_current_uidx
+  on versions(repo_id, path) where next_id is null;
+
+-- history walks: iterating a document's versions by chain
+create index versions_document_id_idx on versions(document_id);
+
+-- One live document per NORMALIZED path in a repo (case-insensitive twin of
+-- versions_repo_path_current_uidx). Live rows only; deleted rows exempt (§3.5.1).
+create unique index versions_repo_pathnorm_current_uidx
+  on versions(repo_id, path_norm) where next_id is null;
+
+create table chunks (
+  version_id integer not null references versions(id),
+  ix         integer not null,
+  text       text    not null,
+  text_hash  text    not null,
+  model      text    not null,
+  embedding  blob,
+  primary key (version_id, ix)
+);
+
+create index chunks_hash_model_idx on chunks(text_hash, model);
+
+create table embedding_backlog (
+  version_id    integer primary key references versions(id),
+  attempts      integer not null,
+  last_error    text,
+  next_retry_at text
+);
+
+-- FTS5 index over versions.body — design §5.1, §7.2. External-content
+-- virtual table so we don't duplicate body storage. Triggers mirror
+-- INSERT/DELETE on versions; fts_search filters next_id IS NULL at query time.
+create virtual table fts_docs using fts5(
+  body,
+  content='versions',
+  content_rowid='id',
+  tokenize='porter unicode61 remove_diacritics 1'
+);
+
+create trigger fts_docs_ai after insert on versions begin
+  insert into fts_docs(rowid, body) values (new.id, new.body);
+end;
+
+create trigger fts_docs_ad after delete on versions begin
+  insert into fts_docs(fts_docs, rowid, body) values('delete', old.id, old.body);
+end;
+
+-- Links derived index — design §11.2. One row per outbound STATIC edge from
+-- the live corpus, doc-keyed. Binds to target document identity (target_id),
+-- so moves never churn inbound edges; dangling rows (target_id NULL) rebind
+-- when a document appears at target_norm's folded path. Never source of truth.
+create table links (
+  repo_id     integer not null references repos(id),
+  source_id   integer not null references documents(id),
+  ord         integer not null,
+  field       text    not null,
+  target_raw  text    not null,
+  target_norm text    not null,
+  target_id   integer          references documents(id),
+  primary key (source_id, ord)
+);
+
+-- Backlinks direction (others → me). Partial — danglers served by target_norm.
+create index links_target_id_idx on links(target_id) where target_id is not null;
+
+-- Dangling re-resolution (§11.2): repo-scoped, folded-target lookup.
+create index links_dangling_idx on links(repo_id, target_norm) where target_id is null;

package/dist/storage-sqlite/migrations/0002_content_hash.sql

@@ -0,0 +1,7 @@
+-- $content_hash intrinsic (sync/history plan §2.3).
+--
+-- Nullable so the migration is instant; null means "not yet backfilled" and
+-- reads compute on the fly during the transition. version_insert computes the
+-- value inside the same tx as the insert, so no new row lacks its hash.
+alter table versions add column content_hash text;
+create index versions_content_hash_idx on versions(content_hash);

package/dist/storage-sqlite/migrations/index.d.ts

@@ -0,0 +1,6 @@
+import type Database from "better-sqlite3";
+/**
+ * Apply pending migrations. Idempotent and forward-only (design §7.2.2).
+ * Progress is tracked via `PRAGMA user_version`.
+ */
+export declare function migrate(db: Database.Database): void;

package/dist/storage-sqlite/migrations/index.js

@@ -0,0 +1,41 @@
+import { readFileSync, readdirSync } from "node:fs";
+import { dirname, join } from "node:path";
+import { fileURLToPath } from "node:url";
+const MIGRATIONS_DIR = dirname(fileURLToPath(import.meta.url));
+function loadMigrations() {
+    const files = readdirSync(MIGRATIONS_DIR)
+        .filter((f) => f.endsWith(".sql"))
+        .sort();
+    return files.map((name) => {
+        const match = name.match(/^(\d+)_.+\.sql$/);
+        if (!match || !match[1]) {
+            throw new Error(`migration file "${name}" must match <NNNN>_<name>.sql`);
+        }
+        const version = Number.parseInt(match[1], 10);
+        const sql = readFileSync(join(MIGRATIONS_DIR, name), "utf8");
+        return { version, name, sql };
+    });
+}
+/**
+ * Apply pending migrations. Idempotent and forward-only (design §7.2.2).
+ * Progress is tracked via `PRAGMA user_version`.
+ */
+export function migrate(db) {
+    const migrations = loadMigrations();
+    const currentRow = db.pragma("user_version", { simple: true });
+    for (const m of migrations) {
+        if (m.version <= currentRow)
+            continue;
+        db.exec("begin");
+        try {
+            db.exec(m.sql);
+            db.pragma(`user_version = ${m.version}`);
+            db.exec("commit");
+        }
+        catch (err) {
+            db.exec("rollback");
+            throw new Error(`migration ${m.name} failed: ${err.message}`);
+        }
+    }
+}
+//# sourceMappingURL=index.js.map

package/dist/storage-sqlite/migrations/index.js.map

@@ -0,0 +1 @@
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package/dist/storage-sqlite/vec.d.ts

@@ -0,0 +1,40 @@
+/**
+ * sqlite-vec extension loading + float32 BLOB encode/decode.
+ *
+ * Design §7.2.1 pins SQLite vector search at brute-force in v1 (indexed
+ * ANN belongs to M5's pgvector adapter). This module keeps that posture:
+ *   • Vectors live in `chunks.embedding` as raw little-endian float32
+ *     BLOBs — one column, one representation, one round-trip cost.
+ *   • Distance is computed by sqlite-vec's `vec_distance_cosine` UDF over
+ *     the join with `versions.next_id IS NULL`; no `vec0` virtual table
+ *     (would be a shadow store to keep in sync with the version chain).
+ *
+ * m4-plan §5 decision 3.
+ */
+import type Database from "better-sqlite3";
+/**
+ * Load the sqlite-vec loadable extension into a better-sqlite3 handle.
+ * Idempotent per connection — safe to call multiple times.
+ *
+ * m4-plan risks: extension loading is the platform risk. If a CI cell
+ * lacks the prebuilt binary for its (arch, glibc) combination, this
+ * throws at open() rather than at query time — visible failure, not
+ * silent degradation.
+ */
+export declare function loadSqliteVec(db: Database.Database): void;
+/**
+ * Encode a JS number array (or Float32Array) as a little-endian float32
+ * BLOB — the wire format sqlite-vec's distance UDFs expect.
+ *
+ * Node Buffers back their underlying ArrayBuffer natively little-endian
+ * on every platform mrplex supports, but we pin the byteOrder explicitly
+ * so a future big-endian read (e.g. from a non-JS reader — see m4-plan
+ * risks) has a documented contract to check against.
+ */
+export declare function encodeVectorBlob(vector: readonly number[] | Float32Array): Buffer;
+/**
+ * Decode a float32 BLOB back to a Float32Array. Length must be a
+ * multiple of 4; otherwise the BLOB was written by something that
+ * disagreed with §chunks storage — throw rather than silently truncate.
+ */
+export declare function decodeVectorBlob(blob: Buffer | Uint8Array): Float32Array;

package/dist/storage-sqlite/vec.js

@@ -0,0 +1,62 @@
+/**
+ * sqlite-vec extension loading + float32 BLOB encode/decode.
+ *
+ * Design §7.2.1 pins SQLite vector search at brute-force in v1 (indexed
+ * ANN belongs to M5's pgvector adapter). This module keeps that posture:
+ *   • Vectors live in `chunks.embedding` as raw little-endian float32
+ *     BLOBs — one column, one representation, one round-trip cost.
+ *   • Distance is computed by sqlite-vec's `vec_distance_cosine` UDF over
+ *     the join with `versions.next_id IS NULL`; no `vec0` virtual table
+ *     (would be a shadow store to keep in sync with the version chain).
+ *
+ * m4-plan §5 decision 3.
+ */
+import * as sqliteVec from "sqlite-vec";
+/**
+ * Load the sqlite-vec loadable extension into a better-sqlite3 handle.
+ * Idempotent per connection — safe to call multiple times.
+ *
+ * m4-plan risks: extension loading is the platform risk. If a CI cell
+ * lacks the prebuilt binary for its (arch, glibc) combination, this
+ * throws at open() rather than at query time — visible failure, not
+ * silent degradation.
+ */
+export function loadSqliteVec(db) {
+    sqliteVec.load(db);
+}
+/**
+ * Encode a JS number array (or Float32Array) as a little-endian float32
+ * BLOB — the wire format sqlite-vec's distance UDFs expect.
+ *
+ * Node Buffers back their underlying ArrayBuffer natively little-endian
+ * on every platform mrplex supports, but we pin the byteOrder explicitly
+ * so a future big-endian read (e.g. from a non-JS reader — see m4-plan
+ * risks) has a documented contract to check against.
+ */
+export function encodeVectorBlob(vector) {
+    const arr = vector instanceof Float32Array ? vector : Float32Array.from(vector);
+    // Copy into a fresh Buffer so callers holding the Float32Array can't
+    // observe mutations through the BLOB later.
+    const buf = Buffer.alloc(arr.byteLength);
+    for (let i = 0; i < arr.length; i++) {
+        buf.writeFloatLE(arr[i], i * 4);
+    }
+    return buf;
+}
+/**
+ * Decode a float32 BLOB back to a Float32Array. Length must be a
+ * multiple of 4; otherwise the BLOB was written by something that
+ * disagreed with §chunks storage — throw rather than silently truncate.
+ */
+export function decodeVectorBlob(blob) {
+    const buf = Buffer.isBuffer(blob) ? blob : Buffer.from(blob);
+    if (buf.byteLength % 4 !== 0) {
+        throw new Error(`vec: BLOB length ${buf.byteLength} is not a multiple of 4 (expected float32)`);
+    }
+    const out = new Float32Array(buf.byteLength / 4);
+    for (let i = 0; i < out.length; i++) {
+        out[i] = buf.readFloatLE(i * 4);
+    }
+    return out;
+}
+//# sourceMappingURL=vec.js.map

package/dist/storage-sqlite/vec.js.map

@@ -0,0 +1 @@
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package/dist/sync/cursor.d.ts

@@ -0,0 +1,36 @@
+/**
+ * The one persistent client state: a single cursor (sync/history plan §4.2).
+ * `<root>/.mrplex/sync.json` holds `{ server | database, repo,
+ * last_synced_version_id }`, meaning "every change at or before this position
+ * in the log is reflected on disk." The source is recorded as exactly one of
+ * `server` (remote sync) or `database` (local sync) — they are mutually
+ * exclusive, mirroring the CLI's --server/--database gate. In-vault so it
+ * travels with the vault it describes. There is no per-file manifest or
+ * tombstone journal.
+ */
+export type SyncCursor = {
+    server?: string;
+    database?: string;
+    repo?: string;
+    last_synced_version_id: string;
+};
+/**
+ * Resolve the cursor's source fields (§4.2). The source is exactly one of
+ * `server` (remote sync) or `database` (local sync); a set `server` always
+ * wins, otherwise a set `database` is recorded. When neither is supplied on
+ * this run, carry forward whatever the existing marker held so an incidental
+ * re-run (e.g. via a different code path) doesn't strip provenance.
+ */
+export declare function sourceFields(server: string | undefined, database: string | undefined, existing: SyncCursor | null): Pick<SyncCursor, "server" | "database">;
+/**
+ * Read the cursor file, or null when absent (marker absent → full index
+ * reconciliation, §4.9). A malformed file throws — the caller must not silently
+ * treat corruption as "start fresh."
+ */
+export declare function readCursor(root: string): Promise<SyncCursor | null>;
+/**
+ * Write the cursor atomically (temp + rename) so a crash mid-write can't leave
+ * a torn file. The cursor advances only after a batch's filesystem effects
+ * complete (§4.3), so this is called at safe points.
+ */
+export declare function writeCursor(root: string, cursor: SyncCursor): Promise<void>;