monomind 2.7.11 → 2.7.13

package/packages/@monomind/cli/dist/src/mcp-server.js

@@ -1,964 +0,0 @@
-/**
- * CLI MCP Server Management
- *
- * Provides server lifecycle management for MCP integration:
- * - Start/stop/status methods with process management
- * - Health check endpoint integration
- * - Graceful shutdown handling
- * - PID file management for daemon detection
- * - Event-based status monitoring
- *
- * Performance Targets:
- * - Server startup: <400ms
- * - Health check: <10ms
- * - Graceful shutdown: <5s
- *
- * @module @monomind/cli/mcp-server
- * @version 3.0.0
- */
-import { EventEmitter } from 'events';
-import { execSync } from 'child_process';
-import * as http from 'http';
-import { randomUUID } from 'crypto';
-import * as path from 'path';
-import * as fs from 'fs';
-/**
- * Recursively strip prototype-pollution keys from a JSON-RPC message before
- * downstream tool handlers consume it. Tool handlers commonly do shallow
- * merges like `{ ...defaults, ...input }`, which would propagate
- * `__proto__`/`constructor`/`prototype` payloads onto config objects.
- */
-const FORBIDDEN_PROTO_KEYS = new Set(['__proto__', 'constructor', 'prototype']);
-function sanitizeJsonRpcMessage(value, depth = 0) {
-    if (depth > 16)
-        return null;
-    if (Array.isArray(value))
-        return value.map(v => sanitizeJsonRpcMessage(v, depth + 1));
-    if (value !== null && typeof value === 'object') {
-        const out = {};
-        for (const [k, v] of Object.entries(value)) {
-            if (FORBIDDEN_PROTO_KEYS.has(k))
-                continue;
-            out[k] = sanitizeJsonRpcMessage(v, depth + 1);
-        }
-        return out;
-    }
-    return value;
-}
-import * as os from 'os';
-import { fileURLToPath } from 'url';
-import { dirname } from 'path';
-import { trackRequest } from './mcp-tools/request-tracker.js';
-// ESM-compatible __dirname
-const __filename = fileURLToPath(import.meta.url);
-const __dirname = dirname(__filename);
-/**
- * Default configuration
- */
-/**
- * Resolve a per-user state directory under $HOME/.monomind. /tmp is shared and
- * world-traversable; placing the PID/log files there made them symlink-
- * attackable (a local attacker pre-creates /tmp/monomind-mcp.pid as a symlink
- * to e.g. ~/.ssh/authorized_keys, then a writeFile clobbers the target).
- */
-function getDefaultStateDir() {
-    const home = os.homedir();
-    return path.join(home, '.monomind');
-}
-const DEFAULT_OPTIONS = {
-    transport: 'stdio',
-    host: 'localhost',
-    port: 3000,
-    pidFile: path.join(getDefaultStateDir(), 'mcp.pid'),
-    logFile: path.join(getDefaultStateDir(), 'mcp.log'),
-    tools: 'all',
-    daemonize: false,
-    timeout: 30000,
-};
-/**
- * MCP Server Manager
- *
- * Manages the lifecycle of the MCP server process
- */
-export class MCPServerManager extends EventEmitter {
-    options;
-    process;
-    server;
-    startTime;
-    _stdioServerStarted = false;
-    healthCheckInterval;
-    constructor(options = {}) {
-        super();
-        this.options = { ...DEFAULT_OPTIONS, ...options };
-    }
-    /**
-     * Start the MCP server
-     */
-    async start() {
-        // Check if already running (skip if status reports our own PID —
-        // getStatus() returns running=true for the current process in stdio mode
-        // even before the server is actually started)
-        const status = await this.getStatus();
-        if (status.running && status.pid !== process.pid) {
-            throw new Error(`MCP Server already running (PID: ${status.pid})`);
-        }
-        const startTime = performance.now();
-        this.startTime = new Date();
-        this.emit('starting', { options: this.options });
-        try {
-            if (this.options.transport === 'stdio') {
-                // For stdio transport, spawn the server process
-                await this.startStdioServer();
-            }
-            else {
-                // For HTTP/WebSocket, start in-process server
-                await this.startHttpServer();
-            }
-            const duration = performance.now() - startTime;
-            // Write PID file
-            await this.writePidFile();
-            // Start health check monitoring
-            this.startHealthMonitoring();
-            const finalStatus = await this.getStatus();
-            this.emit('started', {
-                ...finalStatus,
-                startupTime: duration,
-            });
-            return finalStatus;
-        }
-        catch (error) {
-            this.emit('error', error);
-            throw error;
-        }
-    }
-    /**
-     * Stop the MCP server
-     */
-    async stop(force = false) {
-        const status = await this.getStatus();
-        if (!status.running) {
-            return;
-        }
-        this.emit('stopping', { force });
-        try {
-            // Stop health monitoring
-            if (this.healthCheckInterval) {
-                clearInterval(this.healthCheckInterval);
-                this.healthCheckInterval = undefined;
-            }
-            if (this.process) {
-                // Graceful shutdown
-                if (!force) {
-                    this.process.kill('SIGTERM');
-                    await this.waitForExit(5000);
-                }
-                // Force kill if still running
-                if (this.process && !this.process.killed) {
-                    this.process.kill('SIGKILL');
-                }
-                this.process = undefined;
-            }
-            if (this.server) {
-                await new Promise((resolve) => {
-                    this.server.close(() => resolve());
-                });
-                this.server = undefined;
-            }
-            if (this._mcpServer) {
-                try {
-                    await this._mcpServer.close();
-                }
-                catch { /* ignore */ }
-                this._mcpServer = undefined;
-            }
-            // Remove PID file
-            await this.removePidFile();
-            this.startTime = undefined;
-            this.emit('stopped');
-        }
-        catch (error) {
-            this.emit('error', error);
-            throw error;
-        }
-    }
-    /**
-     * Get server status
-     */
-    async getStatus() {
-        // Check PID file
-        const pid = await this.readPidFile();
-        if (!pid) {
-            // No PID file found. Detect if we are running in stdio mode
-            // (e.g., launched by Claude Code via `claude mcp add`).
-            //
-            // SECURITY/CORRECTNESS: this must NOT fall back to a TTY heuristic
-            // (`!process.stdin.isTTY`) — that is true for ANY non-interactive
-            // invocation (piped, in CI, in a script), so it falsely reported
-            // "running" even when no server was actually started. Only trust
-            // real state: the explicit stdio-transport env var, or the
-            // `_stdioServerStarted` flag that tracks an actually-started server.
-            const envTransport = process.env.MONOMIND_MCP_TRANSPORT;
-            if (envTransport === 'stdio' || this._stdioServerStarted) {
-                return {
-                    running: true,
-                    pid: process.pid,
-                    transport: 'stdio',
-                    startedAt: this.startTime?.toISOString(),
-                    uptime: this.startTime
-                        ? Math.floor((Date.now() - this.startTime.getTime()) / 1000)
-                        : undefined,
-                };
-            }
-            return { running: false };
-        }
-        // Check if process is running
-        const isRunning = this.isProcessRunning(pid);
-        if (!isRunning) {
-            // Clean up stale PID file
-            await this.removePidFile();
-            return { running: false };
-        }
-        // Build status
-        const status = {
-            running: true,
-            pid,
-            transport: this.options.transport,
-            host: this.options.host,
-            port: this.options.port,
-            startedAt: this.startTime?.toISOString(),
-            uptime: this.startTime
-                ? Math.floor((Date.now() - this.startTime.getTime()) / 1000)
-                : undefined,
-        };
-        // Get health status for HTTP transport
-        if (this.options.transport !== 'stdio') {
-            status.health = await this.checkHealth();
-        }
-        return status;
-    }
-    /**
-     * Check server health
-     */
-    async checkHealth() {
-        if (this.options.transport === 'stdio') {
-            // For stdio, check if process is running
-            const pid = await this.readPidFile();
-            if (pid === null) {
-                return { healthy: false, error: 'No PID file found' };
-            }
-            if (!this.isProcessRunning(pid)) {
-                // Clean up stale PID file
-                await this.removePidFile();
-                return { healthy: false, error: 'Process not running (cleaned up stale PID)' };
-            }
-            return { healthy: true };
-        }
-        // For HTTP/WebSocket, make health check request
-        try {
-            const response = await this.httpRequest(`http://${this.options.host}:${this.options.port}/health`, 'GET', this.options.timeout);
-            return {
-                healthy: response.status === 'ok',
-                metrics: {
-                    connections: response.connections || 0,
-                },
-            };
-        }
-        catch (error) {
-            return {
-                healthy: false,
-                error: error instanceof Error ? error.message : 'Unknown error',
-            };
-        }
-    }
-    /**
-     * Restart the server
-     */
-    async restart() {
-        await this.stop();
-        return await this.start();
-    }
-    /**
-     * Start stdio server in-process
-     * Handles stdin/stdout directly like V2 implementation
-     */
-    async startStdioServer() {
-        this._stdioServerStarted = true;
-        // Import the tool registry
-        const { listMCPTools, callMCPTool, hasTool } = await import('./mcp-client.js');
-        const VERSION = '3.0.0';
-        const sessionId = `mcp-${Date.now()}-${randomUUID().slice(0, 8)}`;
-        // Log to stderr to not corrupt stdout
-        console.error(`[${new Date().toISOString()}] INFO [monomind-mcp] (${sessionId}) Starting in stdio mode`);
-        // Auto-initialize memory database before tools are registered (#1524)
-        // This ensures memory_store and other memory tools work immediately
-        // without waiting for the first tool call to trigger lazy init.
-        try {
-            const { initializeMemoryDatabase, checkMemoryInitialization } = await import('./memory/memory-initializer.js');
-            const status = await checkMemoryInitialization();
-            if (!status.initialized) {
-                console.error(`[${new Date().toISOString()}] INFO [monomind-mcp] (${sessionId}) Auto-initializing memory database...`);
-                const result = await initializeMemoryDatabase({ force: false, verbose: false });
-                if (result.success) {
-                    console.error(`[${new Date().toISOString()}] INFO [monomind-mcp] (${sessionId}) Memory database initialized at ${result.dbPath}`);
-                }
-                else if (result.error && !result.error.includes('already exists')) {
-                    console.error(`[${new Date().toISOString()}] WARN [monomind-mcp] (${sessionId}) Memory database init returned: ${result.error}`);
-                }
-            }
-            else {
-                console.error(`[${new Date().toISOString()}] INFO [monomind-mcp] (${sessionId}) Memory database already initialized (v${status.version || 'unknown'})`);
-            }
-        }
-        catch (memInitError) {
-            // Graceful degradation: server continues even if memory init fails.
-            // Memory tools will attempt lazy init on first call via ensureInitialized().
-            console.error(`[${new Date().toISOString()}] WARN [monomind-mcp] (${sessionId}) Memory auto-init failed (tools will retry on first call): ${memInitError instanceof Error ? memInitError.message : String(memInitError)}`);
-        }
-        console.error(JSON.stringify({
-            arch: process.arch,
-            mode: 'mcp-stdio',
-            nodeVersion: process.version,
-            pid: process.pid,
-            platform: process.platform,
-            protocol: 'stdio',
-            sessionId,
-            version: VERSION,
-        }));
-        // Send server initialization notification
-        console.log(JSON.stringify({
-            jsonrpc: '2.0',
-            method: 'server.initialized',
-            params: {
-                serverInfo: {
-                    name: 'monomind',
-                    version: VERSION,
-                    capabilities: {
-                        tools: { listChanged: true },
-                        resources: { subscribe: true, listChanged: true },
-                    },
-                },
-            },
-        }));
-        // Handle stdin messages (S-5: bounded buffer to prevent OOM)
-        const MAX_BUFFER_SIZE = 10 * 1024 * 1024; // 10MB
-        let buffer = '';
-        process.stdin.on('data', async (chunk) => {
-            buffer += chunk.toString();
-            if (buffer.length > MAX_BUFFER_SIZE) {
-                console.error(`[${new Date().toISOString()}] ERROR [monomind-mcp] Buffer exceeded ${MAX_BUFFER_SIZE} bytes, rejecting`);
-                buffer = '';
-                console.log(JSON.stringify({
-                    jsonrpc: '2.0',
-                    error: { code: -32600, message: 'Request too large' },
-                }));
-                return;
-            }
-            // Process complete JSON messages
-            let lines = buffer.split('\n');
-            buffer = lines.pop() || ''; // Keep incomplete line in buffer
-            for (const line of lines) {
-                if (line.trim()) {
-                    try {
-                        // Sanitize against prototype pollution. JSON.parse on its own does
-                        // not pollute, but downstream tool handlers that shallow-merge
-                        // input into option defaults would propagate `__proto__`,
-                        // `constructor`, or `prototype` keys. Strip them at the boundary.
-                        const message = sanitizeJsonRpcMessage(JSON.parse(line));
-                        const response = await this.handleMCPMessage(message, sessionId);
-                        if (response) {
-                            console.log(JSON.stringify(response));
-                        }
-                    }
-                    catch (error) {
-                        // Log-injection defense: stringify message fragment instead of
-                        // letting raw line content land in the log unescaped.
-                        const safeMsg = (error instanceof Error ? error.message : String(error))
-                            .replace(/[\r\n\x00-\x1f\x7f]/g, '?').slice(0, 500);
-                        console.error(`[${new Date().toISOString()}] ERROR [monomind-mcp] Failed to parse message: ${safeMsg}`);
-                    }
-                }
-            }
-        });
-        // Centralized graceful shutdown — clears the health-check interval and
-        // removes the PID file before exiting. Without this an abrupt
-        // `process.exit(0)` leaves a stale PID file plus a dangling interval and
-        // unflushed in-flight tool calls.
-        let shuttingDown = false;
-        const shutdown = async (reason) => {
-            if (shuttingDown)
-                return;
-            shuttingDown = true;
-            console.error(`[${new Date().toISOString()}] INFO [monomind-mcp] (${sessionId}) ${reason}, shutting down...`);
-            try {
-                if (this.healthCheckInterval) {
-                    clearInterval(this.healthCheckInterval);
-                    this.healthCheckInterval = undefined;
-                }
-            }
-            catch { /* best-effort */ }
-            try {
-                await this.removePidFile();
-            }
-            catch { /* best-effort */ }
-            process.exit(0);
-        };
-        process.stdin.on('end', () => { void shutdown('stdin closed'); });
-        process.on('SIGINT', () => { void shutdown('Received SIGINT'); });
-        process.on('SIGTERM', () => { void shutdown('Received SIGTERM'); });
-        process.on('SIGHUP', () => { void shutdown('Received SIGHUP'); });
-        // Mark as ready immediately for stdio
-        this.emit('ready');
-    }
-    /**
-     * Handle incoming MCP message
-     */
-    async handleMCPMessage(message, sessionId) {
-        const { listMCPTools, callMCPTool, hasTool } = await import('./mcp-client.js');
-        if (!message.method) {
-            return {
-                jsonrpc: '2.0',
-                id: message.id,
-                error: { code: -32600, message: 'Invalid Request: missing method' },
-            };
-        }
-        const params = (message.params || {});
-        try {
-            switch (message.method) {
-                case 'initialize':
-                    return {
-                        jsonrpc: '2.0',
-                        id: message.id,
-                        result: {
-                            protocolVersion: '2024-11-05',
-                            serverInfo: { name: 'monomind', version: '3.0.0' },
-                            capabilities: {
-                                tools: { listChanged: true },
-                                resources: { subscribe: true, listChanged: true },
-                            },
-                        },
-                    };
-                case 'tools/list':
-                    const tools = await listMCPTools();
-                    return {
-                        jsonrpc: '2.0',
-                        id: message.id,
-                        result: {
-                            tools: tools.map(tool => ({
-                                name: tool.name,
-                                description: tool.description,
-                                inputSchema: tool.inputSchema,
-                            })),
-                        },
-                    };
-                case 'tools/call': {
-                    // Strict boundary validation. Without this, `params.name` could be
-                    // an array/object (silently coerced) and `params.arguments` could be
-                    // an array (downstream `Object.keys` returns numeric indices).
-                    if (typeof params.name !== 'string') {
-                        return {
-                            jsonrpc: '2.0',
-                            id: message.id,
-                            error: { code: -32602, message: 'Invalid params.name: must be a string' },
-                        };
-                    }
-                    const rawArgs = params.arguments;
-                    if (rawArgs !== undefined && (typeof rawArgs !== 'object' || rawArgs === null || Array.isArray(rawArgs))) {
-                        return {
-                            jsonrpc: '2.0',
-                            id: message.id,
-                            error: { code: -32602, message: 'Invalid params.arguments: must be an object' },
-                        };
-                    }
-                    const toolName = params.name;
-                    const toolParams = (rawArgs || {});
-                    // validateInput boundary: sanitize the incoming tool name.
-                    // This gates every MCP tool invocation (including path/write/command
-                    // tools), so invalid names are rejected before reaching tool handlers.
-                    {
-                        const { validateInput } = await import('./utils/input-guards.js');
-                        const check = validateInput(toolName, { type: 'string', maxLength: 200 });
-                        if (!check.valid) {
-                            return {
-                                jsonrpc: '2.0',
-                                id: message.id,
-                                error: { code: -32602, message: `Invalid tool name: ${check.error}` },
-                            };
-                        }
-                    }
-                    if (!await hasTool(toolName)) {
-                        return {
-                            jsonrpc: '2.0',
-                            id: message.id,
-                            error: { code: -32601, message: `Tool not found: ${toolName}` },
-                        };
-                    }
-                    try {
-                        const result = await callMCPTool(toolName, toolParams, { sessionId });
-                        trackRequest(toolName, true);
-                        // Handlers return MCPToolResult {content, isError} — pass through directly.
-                        // Only wrap in a text envelope if the result is not already MCP-shaped.
-                        const isMcpResult = result !== null && typeof result === 'object' &&
-                            'content' in result && Array.isArray(result.content);
-                        return {
-                            jsonrpc: '2.0',
-                            id: message.id,
-                            result: isMcpResult
-                                ? result
-                                : { content: [{ type: 'text', text: JSON.stringify(result, null, 2) }] },
-                        };
-                    }
-                    catch (error) {
-                        trackRequest(toolName, false);
-                        const errMsg = process.env.NODE_ENV === 'production'
-                            ? 'Tool execution failed'
-                            : (error instanceof Error ? error.message : 'Tool execution failed');
-                        return {
-                            jsonrpc: '2.0',
-                            id: message.id,
-                            error: {
-                                code: -32603,
-                                message: errMsg,
-                            },
-                        };
-                    }
-                }
-                case 'resources/list':
-                    return {
-                        jsonrpc: '2.0',
-                        id: message.id,
-                        result: {
-                            resources: [
-                                {
-                                    uri: 'monograph://repo/processes',
-                                    name: 'Processes',
-                                    description: 'All detected Process nodes with their steps',
-                                    mimeType: 'application/json',
-                                },
-                                {
-                                    uri: 'monograph://repo/communities',
-                                    name: 'Communities',
-                                    description: 'All community clusters with member symbols',
-                                    mimeType: 'application/json',
-                                },
-                                {
-                                    uri: 'monograph://repo/schema',
-                                    name: 'Schema',
-                                    description: 'Graph schema: node labels, edge relations, counts',
-                                    mimeType: 'application/json',
-                                },
-                                {
-                                    uri: 'monograph://repo/graph',
-                                    name: 'Graph',
-                                    description: 'Full graph export (nodes + edges, up to 2000 nodes)',
-                                    mimeType: 'application/json',
-                                },
-                            ],
-                        },
-                    };
-                case 'resources/read': {
-                    const uri = params.uri ?? '';
-                    try {
-                        const { join } = await import('path');
-                        const { openDb, closeDb } = await import('@monoes/monograph');
-                        const { getProcessesResource, getCommunitiesResource, getSchemaResource, getGraphResource } = await import('@monoes/monograph');
-                        const projectCwd = process.env['MONOMIND_CWD'] || process.cwd();
-                        const dbPath = join(projectCwd, '.monomind', 'monograph.db');
-                        const resDb = openDb(dbPath);
-                        let data;
-                        try {
-                            switch (uri) {
-                                case 'monograph://repo/processes':
-                                    data = getProcessesResource(resDb);
-                                    break;
-                                case 'monograph://repo/communities':
-                                    data = getCommunitiesResource(resDb);
-                                    break;
-                                case 'monograph://repo/schema':
-                                    data = getSchemaResource(resDb);
-                                    break;
-                                case 'monograph://repo/graph':
-                                    data = getGraphResource(resDb);
-                                    break;
-                                default:
-                                    return {
-                                        jsonrpc: '2.0',
-                                        id: message.id,
-                                        error: { code: -32602, message: `Unknown resource URI: ${uri}` },
-                                    };
-                            }
-                        }
-                        finally {
-                            closeDb(resDb);
-                        }
-                        return {
-                            jsonrpc: '2.0',
-                            id: message.id,
-                            result: {
-                                contents: [
-                                    {
-                                        uri,
-                                        text: JSON.stringify(data),
-                                        mimeType: 'application/json',
-                                    },
-                                ],
-                            },
-                        };
-                    }
-                    catch (err) {
-                        return {
-                            jsonrpc: '2.0',
-                            id: message.id,
-                            error: {
-                                code: -32603,
-                                message: err instanceof Error ? err.message : 'Failed to read resource',
-                            },
-                        };
-                    }
-                }
-                case 'notifications/initialized':
-                    // Client notification - no response needed
-                    console.error(`[${new Date().toISOString()}] INFO [monomind-mcp] (${sessionId}) Client initialized`);
-                    return null;
-                case 'ping':
-                    return {
-                        jsonrpc: '2.0',
-                        id: message.id,
-                        result: {},
-                    };
-                default:
-                    return {
-                        jsonrpc: '2.0',
-                        id: message.id,
-                        error: { code: -32601, message: `Method not found: ${message.method}` },
-                    };
-            }
-        }
-        catch (error) {
-            // Log-injection defense: caller-controlled `message.method` may contain
-            // newlines, ANSI escapes, or other control bytes that forge log lines.
-            // JSON.stringify quotes the string and escapes control chars.
-            const safeMethod = JSON.stringify(message.method);
-            const errMsg = error instanceof Error ? error.message : String(error);
-            console.error(`[${new Date().toISOString()}] ERROR [monomind-mcp] Error handling ${safeMethod}: ${errMsg.replace(/[\r\n]/g, ' ')}`);
-            // Sanitize outgoing error messages — internal Error.message often
-            // contains absolute paths or partial secrets. In production return a
-            // generic message; in dev/debug return the full message for triage.
-            const isProd = process.env.NODE_ENV === 'production';
-            const outMessage = error instanceof Error
-                ? (isProd ? 'Internal error' : error.message)
-                : 'Internal error';
-            return {
-                jsonrpc: '2.0',
-                id: message.id,
-                error: { code: -32603, message: outMessage },
-            };
-        }
-    }
-    /**
-     * Start HTTP server in-process.
-     *
-     * SECURITY: refuses to bind to non-loopback hosts unless the operator opts
-     * in via MONOMIND_MCP_ALLOW_REMOTE=1 AND provides a bearer token via
-     * MONOMIND_MCP_TOKEN. Without this gate, `--host 0.0.0.0` exposed every
-     * registered tool (including agent_spawn, terminal-tools, system tools) to
-     * any LAN attacker as unauthenticated RCE.
-     */
-    async startHttpServer() {
-        // Loopback gate
-        const host = this.options.host;
-        const isLoopback = host === 'localhost' || host === '127.0.0.1' || host === '::1' || host === '::ffff:127.0.0.1';
-        const allowRemote = process.env.MONOMIND_MCP_ALLOW_REMOTE === '1';
-        const token = process.env.MONOMIND_MCP_TOKEN;
-        if (!isLoopback && !allowRemote) {
-            throw new Error(`Refusing to bind MCP HTTP transport to non-loopback host "${host}". ` +
-                `Set MONOMIND_MCP_ALLOW_REMOTE=1 and MONOMIND_MCP_TOKEN=<secret> to enable remote access.`);
-        }
-        if (!isLoopback && allowRemote && (!token || token.length < 32)) {
-            throw new Error('Remote MCP transport requires MONOMIND_MCP_TOKEN to be set to a strong secret (>= 32 chars).');
-        }
-        // Dynamically import the MCP server package
-        // FIX for issue #942: Use proper package import instead of broken relative path
-        // @ts-ignore — @monoes/mcp is an optional peer resolved at runtime
-        const { createMCPServer } = await import('@monoes/mcp');
-        const logger = {
-            debug: (msg, data) => this.emit('log', { level: 'debug', msg, data }),
-            info: (msg, data) => this.emit('log', { level: 'info', msg, data }),
-            warn: (msg, data) => this.emit('log', { level: 'warn', msg, data }),
-            error: (msg, data) => this.emit('log', { level: 'error', msg, data }),
-        };
-        // SECURITY: actually wire the token into the underlying server's auth
-        // config. The startup gate above only *validates* that a token was set —
-        // without passing it through here, the token was never enforced on
-        // requests. Operators believed their server was protected when it wasn't.
-        // For loopback we still configure auth when a token is set, so users who
-        // explicitly opt-in to bind 0.0.0.0 with a token get end-to-end protection.
-        const authConfig = token && token.length >= 32
-            ? { enabled: true, method: 'token', tokens: [token] }
-            : (isLoopback ? undefined : { enabled: true, method: 'token', tokens: [] });
-        const mcpServer = createMCPServer({
-            name: 'Monomind MCP Server V1',
-            version: '3.0.0',
-            transport: this.options.transport,
-            host: this.options.host,
-            port: this.options.port,
-            enableMetrics: true,
-            enableCaching: true,
-            ...(authConfig ? { auth: authConfig } : {}),
-        }, logger);
-        await mcpServer.start();
-        // Register all CLI tools (monograph, agent, swarm, memory, etc.) with the HTTP/WS server.
-        // Without this the server only exposes its 4 built-in tools.
-        try {
-            const { getAllMCPTools } = await import('./mcp-client.js');
-            const registered = mcpServer.registerTools(await getAllMCPTools());
-            console.error(`[monomind-mcp] HTTP/WS server registered ${registered.registered} tools`);
-        }
-        catch (e) {
-            console.error(`[monomind-mcp] Warning: could not register CLI tools with HTTP/WS server: ${e}`);
-        }
-        // Store reference for stopping
-        this._mcpServer = mcpServer;
-    }
-    /**
-     * Wait for server to be ready
-     */
-    async waitForReady(timeout = 10000) {
-        // For stdio transport, we're ready immediately (in-process)
-        if (this.options.transport === 'stdio') {
-            return;
-        }
-        const startTime = Date.now();
-        while (Date.now() - startTime < timeout) {
-            const health = await this.checkHealth();
-            if (health.healthy) {
-                return;
-            }
-            await this.sleep(100);
-        }
-        throw new Error('Server failed to start within timeout');
-    }
-    /**
-     * Wait for process to exit
-     */
-    async waitForExit(timeout) {
-        if (!this.process)
-            return;
-        return new Promise((resolve) => {
-            const timer = setTimeout(() => {
-                resolve();
-            }, timeout);
-            this.process.once('exit', () => {
-                clearTimeout(timer);
-                resolve();
-            });
-        });
-    }
-    /**
-     * Start health monitoring
-     */
-    startHealthMonitoring() {
-        this.healthCheckInterval = setInterval(async () => {
-            try {
-                const health = await this.checkHealth();
-                this.emit('health', health);
-                if (!health.healthy) {
-                    this.emit('unhealthy', health);
-                }
-            }
-            catch (error) {
-                this.emit('health-error', error);
-            }
-        }, 30000);
-        this.healthCheckInterval.unref();
-    }
-    /**
-     * Write PID file
-     */
-    async writePidFile() {
-        const pid = this.process?.pid || process.pid;
-        // Ensure the state dir exists (user-private, not /tmp)
-        const dir = path.dirname(this.options.pidFile);
-        await fs.promises.mkdir(dir, { recursive: true, mode: 0o700 });
-        // wx flag = O_CREAT | O_EXCL: fails fast on a pre-existing path including
-        // a symlinked one, so we never follow an attacker-staged link to write
-        // PIDs into ~/.ssh/authorized_keys or similar.
-        try {
-            await fs.promises.writeFile(this.options.pidFile, String(pid), { flag: 'wx', mode: 0o600 });
-        }
-        catch (e) {
-            const code = e.code;
-            if (code === 'EEXIST') {
-                // Stale PID file (the existence-check + isProcessRunning gate above
-                // already passed, so the file belongs to a dead daemon). Replace it
-                // by unlinking-then-creating with O_EXCL again — never write through
-                // an existing path that might be a symlink.
-                await fs.promises.unlink(this.options.pidFile);
-                await fs.promises.writeFile(this.options.pidFile, String(pid), { flag: 'wx', mode: 0o600 });
-            }
-            else {
-                throw e;
-            }
-        }
-    }
-    /**
-     * Read PID file
-     */
-    async readPidFile() {
-        try {
-            const content = await fs.promises.readFile(this.options.pidFile, 'utf8');
-            const pid = parseInt(content.trim(), 10);
-            return isNaN(pid) ? null : pid;
-        }
-        catch {
-            return null;
-        }
-    }
-    /**
-     * Remove PID file
-     */
-    async removePidFile() {
-        try {
-            await fs.promises.unlink(this.options.pidFile);
-        }
-        catch {
-            // Ignore errors
-        }
-        // Also clean up legacy PID file location from older versions
-        try {
-            const legacyPath = path.join(process.env.MONOMIND_CWD || process.cwd(), '.monomind', 'mcp-server.pid');
-            if (legacyPath !== this.options.pidFile) {
-                await fs.promises.unlink(legacyPath);
-            }
-        }
-        catch {
-            // Ignore — file may not exist
-        }
-    }
-    /**
-     * Check if process is running AND is a node/monomind process.
-     * Plain `kill -0` returns true for any process with the same owner,
-     * which causes false positives when the OS recycles the PID.
-     */
-    isProcessRunning(pid) {
-        try {
-            process.kill(pid, 0);
-        }
-        catch {
-            return false;
-        }
-        // Verify it's actually our MCP server process (guards against PID reuse by
-        // an unrelated Node.js program that happened to get the same PID).
-        // We require the command line to mention both "node"/"npx" AND "monomind"/"mcp".
-        try {
-            const cmdline = execSync(`cat /proc/${pid}/cmdline 2>/dev/null || ps -p ${pid} -o args= 2>/dev/null`, {
-                encoding: 'utf8',
-                timeout: 1000,
-            }).trim();
-            const isMonomindMcp = (cmdline.includes('node') || cmdline.includes('npx')) &&
-                (cmdline.includes('monomind') || cmdline.includes('mcp'));
-            return isMonomindMcp;
-        }
-        catch {
-            // If we can't inspect the process (macOS, Windows, permissions), fall back to kill check
-            return true;
-        }
-    }
-    /**
-     * Make HTTP request
-     */
-    async httpRequest(url, method, timeout) {
-        return new Promise((resolve, reject) => {
-            const urlObj = new URL(url);
-            const req = http.request({
-                hostname: urlObj.hostname,
-                port: urlObj.port,
-                path: urlObj.pathname,
-                method,
-                timeout,
-            }, (res) => {
-                let data = '';
-                res.on('data', (chunk) => {
-                    data += chunk;
-                });
-                res.on('end', () => {
-                    try {
-                        resolve(JSON.parse(data));
-                    }
-                    catch {
-                        resolve({ status: res.statusCode === 200 ? 'ok' : 'error' });
-                    }
-                });
-            });
-            req.on('error', reject);
-            req.on('timeout', () => {
-                req.destroy();
-                reject(new Error('Request timeout'));
-            });
-            req.end();
-        });
-    }
-    /**
-     * Sleep utility
-     */
-    sleep(ms) {
-        return new Promise((resolve) => setTimeout(resolve, ms));
-    }
-}
-/**
- * Create MCP server manager
- */
-export function createMCPServerManager(options) {
-    return new MCPServerManager(options);
-}
-/**
- * Singleton server manager instance
- */
-let serverManager = null;
-let currentTransport = undefined;
-/**
- * Get or create server manager singleton
- *
- * FIX for issue #942: Recreate singleton if transport type changes
- * Previously, once created with stdio (default), HTTP options were ignored
- */
-export function getServerManager(options) {
-    const requestedTransport = options?.transport;
-    // Recreate if transport type changes (fixes HTTP transport not working)
-    if (serverManager && requestedTransport && requestedTransport !== currentTransport) {
-        serverManager = new MCPServerManager(options);
-        currentTransport = requestedTransport;
-    }
-    if (!serverManager) {
-        serverManager = new MCPServerManager(options);
-        currentTransport = options?.transport;
-    }
-    return serverManager;
-}
-/**
- * Quick start MCP server
- */
-export async function startMCPServer(options) {
-    // Mark as long-lived host so the intelligence/trajectory system stays enabled.
-    // In one-shot CLI mode trajectories are discarded on process exit; across
-    // MCP calls the registry singleton persists so patterns accumulate correctly.
-    process.env.MONOMIND_PERSISTENT_HOST = '1';
-    const manager = getServerManager(options);
-    return await manager.start();
-}
-/**
- * Quick stop MCP server
- */
-export async function stopMCPServer(force = false) {
-    if (serverManager) {
-        await serverManager.stop(force);
-    }
-}
-/**
- * Get MCP server status
- */
-export async function getMCPServerStatus() {
-    const manager = getServerManager();
-    return await manager.getStatus();
-}
-export default MCPServerManager;
-//# sourceMappingURL=mcp-server.js.map