monomind 1.9.16 → 1.10.0

package/packages/@monomind/cli/bundled-graph/dist/src/report.js

@@ -1,214 +0,0 @@
-/**
- * Generate GRAPH_REPORT.md — the human-readable audit trail.
- * Mirrors the output format of Python graphify's report.py.
- */
-import { basename } from 'path';
-import { cohesionScore } from './cluster.js';
-// ---------------------------------------------------------------------------
-// Helpers
-// ---------------------------------------------------------------------------
-/** True if the node label matches its own filename — AST file-hub node. */
-function isFileNode(graph, nodeId) {
-    const label = graph.getNodeAttribute(nodeId, 'label') || '';
-    const sourceFile = graph.getNodeAttribute(nodeId, 'sourceFile') || '';
-    if (!label || !sourceFile)
-        return false;
-    if (label === basename(sourceFile))
-        return true;
-    if (label.startsWith('.') && label.endsWith('()'))
-        return true;
-    return false;
-}
-/** Auto-derive a community label from its member nodes' source directories. */
-function communityLabel(graph, memberIds) {
-    const dirCounts = {};
-    for (const id of memberIds) {
-        const src = graph.getNodeAttribute(id, 'sourceFile') || '';
-        if (!src)
-            continue;
-        const parts = src.split('/');
-        const dir = parts.length > 1 ? parts[parts.length - 2] : parts[0];
-        dirCounts[dir] = (dirCounts[dir] ?? 0) + 1;
-    }
-    const sorted = Object.entries(dirCounts).sort(([, a], [, b]) => b - a);
-    return sorted.length > 0 ? sorted[0][0] : 'misc';
-}
-// ---------------------------------------------------------------------------
-// Main generator
-// ---------------------------------------------------------------------------
-/**
- * Generate the full markdown report string.
- *
- * @param graph     - The annotated Graphology graph (with `community` attributes set)
- * @param analysis  - Result of buildAnalysis()
- * @param cohesionScores - Map of communityId → cohesion score (0–1)
- * @param options   - Optional metadata (projectPath, tokenCost, corpusStats, questions)
- */
-export function generateReport(graph, analysis, cohesionScores, options = {}) {
-    const today = new Date().toISOString().split('T')[0];
-    const root = options.projectPath ?? '.';
-    const scores = cohesionScores ?? {};
-    // Confidence breakdown
-    const totalEdges = graph.size || 1;
-    const confCounts = {};
-    const infScores = [];
-    graph.forEachEdge((_, attrs) => {
-        const c = attrs.confidence || 'EXTRACTED';
-        confCounts[c] = (confCounts[c] ?? 0) + 1;
-        if (c === 'INFERRED') {
-            const cs = attrs.confidenceScore;
-            if (cs !== undefined)
-                infScores.push(cs);
-        }
-    });
-    const extPct = Math.round((confCounts['EXTRACTED'] ?? 0) / totalEdges * 100);
-    const infPct = Math.round((confCounts['INFERRED'] ?? 0) / totalEdges * 100);
-    const ambPct = Math.round((confCounts['AMBIGUOUS'] ?? 0) / totalEdges * 100);
-    const infAvg = infScores.length > 0
-        ? (infScores.reduce((a, b) => a + b, 0) / infScores.length).toFixed(2)
-        : null;
-    const lines = [
-        `# Graph Report - ${root}  (${today})`,
-        '',
-        '## Corpus Check',
-    ];
-    // Corpus check
-    const cs = options.corpusStats;
-    if (cs?.warning) {
-        lines.push(`- ${cs.warning}`);
-    }
-    else if (cs) {
-        lines.push(`- ${cs.totalFiles} files · ~${cs.totalWords.toLocaleString()} words`);
-        lines.push('- Verdict: corpus is large enough that graph structure adds value.');
-    }
-    // Summary
-    const infEdgeCount = confCounts['INFERRED'] ?? 0;
-    const infTag = infAvg !== null
-        ? ` · INFERRED: ${infEdgeCount} edges (avg confidence: ${infAvg})`
-        : '';
-    const tokenCost = options.tokenCost;
-    lines.push('', '## Summary');
-    lines.push(`- ${graph.order} nodes · ${graph.size} edges · ${analysis.stats.communities} communities detected`);
-    lines.push(`- Extraction: ${extPct}% EXTRACTED · ${infPct}% INFERRED · ${ambPct}% AMBIGUOUS${infTag}`);
-    if (tokenCost) {
-        lines.push(`- Token cost: ${tokenCost.input.toLocaleString()} input · ${tokenCost.output.toLocaleString()} output`);
-    }
-    // God nodes
-    lines.push('', '## God Nodes (most connected - your core abstractions)');
-    analysis.godNodes.forEach((node, i) => {
-        lines.push(`${i + 1}. \`${node.label}\` - ${node.degree} edges`);
-    });
-    // Surprising connections
-    lines.push('', '## Surprising Connections (you probably didn\'t know these)');
-    if (analysis.surprises.length > 0) {
-        for (const s of analysis.surprises) {
-            const conf = s.confidence;
-            const confTag = conf === 'INFERRED'
-                ? `INFERRED ${s.confidenceScore?.toFixed(2) ?? ''}`
-                : conf;
-            const semTag = s.relation === 'semantically_similar_to' ? ' [semantically similar]' : '';
-            lines.push(`- \`${s.from}\` --${s.relation}--> \`${s.to}\`  [${confTag}]${semTag}`);
-            lines.push(`  ${s.fromFile} → ${s.toFile}`);
-        }
-    }
-    else {
-        lines.push('- None detected - all connections are within the same source files.');
-    }
-    // Hyperedges (stored in graph metadata)
-    const hyperedges = graph.getAttribute('hyperedges') ?? [];
-    if (hyperedges.length > 0) {
-        lines.push('', '## Hyperedges (group relationships)');
-        for (const h of hyperedges) {
-            const he = h;
-            const nodeLabels = (he.nodes ?? []).join(', ');
-            const conf = he.confidence ?? 'INFERRED';
-            const cs2 = he.confidenceScore;
-            const confTag = cs2 !== undefined ? `${conf} ${cs2.toFixed(2)}` : conf;
-            lines.push(`- **${he.label ?? ''}** — ${nodeLabels} [${confTag}]`);
-        }
-    }
-    // Communities
-    lines.push('', '## Communities');
-    for (const [cidStr, memberIds] of Object.entries(analysis.communities)) {
-        const cid = Number(cidStr);
-        const label = communityLabel(graph, memberIds);
-        const score = scores[cid] !== undefined ? scores[cid] : cohesionScore(graph, memberIds);
-        const realNodes = memberIds.filter((id) => graph.hasNode(id) && !isFileNode(graph, id));
-        const display = realNodes
-            .slice(0, 8)
-            .map((id) => graph.getNodeAttribute(id, 'label') || id);
-        const suffix = realNodes.length > 8 ? ` (+${realNodes.length - 8} more)` : '';
-        lines.push('');
-        lines.push(`### Community ${cid} - "${label}"`);
-        lines.push(`Cohesion: ${score.toFixed(2)}`);
-        lines.push(`Nodes (${realNodes.length}): ${display.join(', ')}${suffix}`);
-    }
-    // Ambiguous edges
-    const ambiguous = [];
-    graph.forEachEdge((_, attrs, source, target) => {
-        if (attrs.confidence === 'AMBIGUOUS') {
-            ambiguous.push({ u: source, v: target, attrs: attrs });
-        }
-    });
-    if (ambiguous.length > 0) {
-        lines.push('', '## Ambiguous Edges - Review These');
-        for (const { u, v, attrs } of ambiguous) {
-            const ul = graph.getNodeAttribute(u, 'label') || u;
-            const vl = graph.getNodeAttribute(v, 'label') || v;
-            lines.push(`- \`${ul}\` → \`${vl}\`  [AMBIGUOUS]`);
-            lines.push(`  ${attrs.sourceFile || ''} · relation: ${attrs.relation || 'unknown'}`);
-        }
-    }
-    // Knowledge gaps
-    const isolated = [];
-    graph.forEachNode((id) => {
-        if (graph.degree(id) <= 1 && !isFileNode(graph, id)) {
-            isolated.push(id);
-        }
-    });
-    const thinCommunities = Object.entries(analysis.communities).filter(([, nodes]) => nodes.length < 3);
-    const gapCount = isolated.length + thinCommunities.length;
-    if (gapCount > 0 || ambPct > 20) {
-        lines.push('', '## Knowledge Gaps');
-        if (isolated.length > 0) {
-            const labels = isolated
-                .slice(0, 5)
-                .map((id) => graph.getNodeAttribute(id, 'label') || id);
-            const suffix = isolated.length > 5 ? ` (+${isolated.length - 5} more)` : '';
-            lines.push(`- **${isolated.length} isolated node(s):** ${labels.map((l) => `\`${l}\``).join(', ')}${suffix}`);
-            lines.push('  These have ≤1 connection - possible missing edges or undocumented components.');
-        }
-        for (const [cidStr, nodes] of thinCommunities) {
-            const cid = Number(cidStr);
-            const label = communityLabel(graph, nodes);
-            const nodeLabels = nodes
-                .map((id) => graph.getNodeAttribute(id, 'label') || id);
-            lines.push(`- **Thin community \`${label}\`** (${nodes.length} nodes): ${nodeLabels.map((l) => `\`${l}\``).join(', ')}`);
-            lines.push('  Too small to be a meaningful cluster - may be noise or needs more connections extracted.');
-        }
-        if (ambPct > 20) {
-            lines.push(`- **High ambiguity: ${ambPct}% of edges are AMBIGUOUS.** Review the Ambiguous Edges section above.`);
-        }
-    }
-    // Suggested questions
-    const questions = options.questions ?? [];
-    if (questions.length > 0) {
-        lines.push('', '## Suggested Questions');
-        const noSignal = questions.length === 1 && questions[0].type === 'ISOLATED_NODE' && questions[0].nodes.length === 0;
-        if (noSignal) {
-            lines.push(`_${questions[0].question}_`);
-        }
-        else {
-            lines.push('_Questions this graph is uniquely positioned to answer:_');
-            lines.push('');
-            for (const q of questions) {
-                if (q.question) {
-                    lines.push(`- **${q.question}**`);
-                    lines.push(`  _Priority: ${q.priority}. Nodes: ${q.nodes.slice(0, 3).map((n) => `\`${n}\``).join(', ')}_`);
-                }
-            }
-        }
-    }
-    return lines.join('\n');
-}
-//# sourceMappingURL=report.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/report.js.map

@@ -1 +0,0 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/types.d.ts

@@ -1,124 +0,0 @@
-export type Confidence = 'EXTRACTED' | 'INFERRED' | 'AMBIGUOUS';
-export type FileType = 'code' | 'document' | 'paper' | 'image' | 'unknown';
-export interface GraphNode {
-    id: string;
-    label: string;
-    fileType: FileType;
-    sourceFile: string;
-    sourceLocation?: string;
-    community?: number;
-    degree?: number;
-    [key: string]: unknown;
-}
-export interface GraphEdge {
-    source: string;
-    target: string;
-    relation: string;
-    confidence: Confidence;
-    confidenceScore?: number;
-    sourceFile?: string;
-    sourceLocation?: string;
-    weight?: number;
-}
-export interface ExtractionResult {
-    nodes: GraphNode[];
-    edges: GraphEdge[];
-    hyperedges?: HyperEdge[];
-    filesProcessed: number;
-    fromCache: number;
-    errors: string[];
-}
-export interface HyperEdge {
-    label: string;
-    nodes: string[];
-    confidence: Confidence;
-    confidenceScore?: number;
-}
-export interface GraphAnalysis {
-    godNodes: GodNode[];
-    surprises: SurpriseEdge[];
-    communities: Record<number, string[]>;
-    stats: GraphStats;
-}
-export interface GodNode {
-    id: string;
-    label: string;
-    degree: number;
-    community?: number;
-    sourceFile: string;
-    neighbors: string[];
-}
-export interface SurpriseEdge {
-    from: string;
-    fromCommunity: number;
-    fromFile: string;
-    to: string;
-    toCommunity: number;
-    toFile: string;
-    relation: string;
-    confidence: Confidence;
-    score: number;
-}
-export interface GraphStats {
-    nodes: number;
-    edges: number;
-    communities: number;
-    confidence: Record<Confidence, number>;
-    fileTypes: Record<string, number>;
-    topRelations: Record<string, number>;
-    isDirected: boolean;
-    graphPath?: string;
-}
-export interface SerializedGraph {
-    version: string;
-    builtAt: string;
-    projectPath: string;
-    nodes: Array<{
-        id: string;
-    } & Record<string, unknown>>;
-    links: Array<{
-        source: string;
-        target: string;
-    } & Record<string, unknown>>;
-    directed: boolean;
-    multigraph: boolean;
-}
-export interface BuildOptions {
-    codeOnly?: boolean;
-    outputDir?: string;
-    maxFileSizeBytes?: number;
-    excludePatterns?: string[];
-    languages?: string[];
-}
-export interface ClassifiedFile {
-    path: string;
-    fileType: FileType;
-    language?: string;
-    sizeBytes: number;
-}
-export interface GraphQuestion {
-    type: 'AMBIGUOUS_EDGE' | 'BRIDGE_NODE' | 'INFERRED_GOD_NODE' | 'ISOLATED_NODE' | 'LOW_COHESION_COMMUNITY';
-    question: string;
-    nodes: string[];
-    priority: 'high' | 'medium' | 'low';
-}
-export interface GraphDiff {
-    addedNodes: string[];
-    removedNodes: string[];
-    addedEdges: Array<{
-        source: string;
-        target: string;
-        relation: string;
-    }>;
-    removedEdges: Array<{
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-        relation: string;
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-    communityChanges: Array<{
-        node: string;
-        oldCommunity: number;
-        newCommunity: number;
-    }>;
-}
-//# sourceMappingURL=types.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/types.d.ts.map

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package/packages/@monomind/cli/bundled-graph/dist/src/types.js

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=types.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/types.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/types.ts"],"names":[],"mappings":""}

package/packages/@monomind/cli/bundled-graph/dist/src/visualize.d.ts

@@ -1,4 +0,0 @@
-import type { SerializedGraph } from './types.js';
-/** Export a rich, self-contained HTML knowledge graph explorer using vis-network. */
-export declare function exportHTML(serialized: SerializedGraph, outputDir: string): string;
-//# sourceMappingURL=visualize.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/visualize.d.ts.map

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