monomind 1.9.16 → 1.10.0

package/packages/@monomind/cli/bundled-graph/dist/src/extract/tree-sitter-runner.d.ts

@@ -1,48 +0,0 @@
-import type { ExtractionResult } from '../types.js';
-import type { LanguageExtractor } from './types.js';
-type ParserInstance = {
-    setLanguage(lang: unknown): void;
-    parse(src: string): {
-        rootNode: SyntaxNodeLike;
-    };
-};
-export type SyntaxNodeLike = {
-    type: string;
-    text: string;
-    startPosition: {
-        row: number;
-        column: number;
-    };
-    endPosition: {
-        row: number;
-        column: number;
-    };
-    children: SyntaxNodeLike[];
-    childForFieldName(name: string): SyntaxNodeLike | null;
-    descendantsOfType(type: string | string[]): SyntaxNodeLike[];
-};
-/**
- * Returns true when node-tree-sitter is installed and loadable.
- */
-export declare function isTreeSitterAvailable(): boolean;
-/**
- * Attempts to create a configured Parser for the given language identifier.
- * Returns null when tree-sitter or the grammar is not installed.
- */
-export declare function tryLoadParser(language: string): ParserInstance | null;
-export declare function walk(node: SyntaxNodeLike, visitor: (n: SyntaxNodeLike) => void): void;
-/**
- * Parses a source file and delegates to the given LanguageExtractor.
- * The extractor receives the file path and raw content; it owns the AST
- * traversal internally (using tryLoadParser / walk from this module).
- *
- * Falls back gracefully: if tree-sitter cannot be loaded the extractor is still
- * called with the raw content and is expected to use its regex fallback.
- */
-export declare function parseFile(filePath: string, content: string, extractor: LanguageExtractor): ExtractionResult;
-/**
- * Convenience helper: read a file from disk and parse it.
- */
-export declare function parseFileFromDisk(filePath: string, extractor: LanguageExtractor): ExtractionResult;
-export {};
-//# sourceMappingURL=tree-sitter-runner.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/tree-sitter-runner.d.ts.map

@@ -1 +0,0 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/extract/tree-sitter-runner.js

@@ -1,137 +0,0 @@
-import { readFileSync } from 'fs';
-// ---- availability probe ----
-let _treeSitterAvailable = null;
-let _ParserCtor = null;
-function probeTreeSitter() {
-    if (_treeSitterAvailable !== null)
-        return;
-    try {
-        // eslint-disable-next-line @typescript-eslint/no-var-requires
-        const mod = require('node-tree-sitter');
-        const ctor = mod.default !== undefined
-            ? mod.default
-            : mod;
-        if (typeof ctor === 'function') {
-            _ParserCtor = ctor;
-            _treeSitterAvailable = true;
-        }
-        else {
-            _treeSitterAvailable = false;
-        }
-    }
-    catch {
-        _treeSitterAvailable = false;
-    }
-}
-/**
- * Returns true when node-tree-sitter is installed and loadable.
- */
-export function isTreeSitterAvailable() {
-    probeTreeSitter();
-    return _treeSitterAvailable === true;
-}
-// ---- language grammar loader ----
-const LANGUAGE_MODULE_MAP = {
-    typescript: 'tree-sitter-typescript',
-    tsx: 'tree-sitter-typescript',
-    javascript: 'tree-sitter-javascript',
-    jsx: 'tree-sitter-javascript',
-    python: 'tree-sitter-python',
-    go: 'tree-sitter-go',
-    rust: 'tree-sitter-rust',
-    java: 'tree-sitter-java',
-    c: 'tree-sitter-c',
-    cpp: 'tree-sitter-cpp',
-    csharp: 'tree-sitter-c-sharp',
-    ruby: 'tree-sitter-ruby',
-    kotlin: 'tree-sitter-kotlin',
-    swift: 'tree-sitter-swift',
-    scala: 'tree-sitter-scala',
-    php: 'tree-sitter-php',
-};
-/**
- * Attempts to create a configured Parser for the given language identifier.
- * Returns null when tree-sitter or the grammar is not installed.
- */
-export function tryLoadParser(language) {
-    if (!isTreeSitterAvailable() || _ParserCtor === null)
-        return null;
-    const moduleName = LANGUAGE_MODULE_MAP[language];
-    if (!moduleName)
-        return null;
-    try {
-        // eslint-disable-next-line @typescript-eslint/no-var-requires
-        const grammarMod = require(moduleName);
-        // tree-sitter-typescript exposes { typescript, tsx } sub-grammars
-        let grammar;
-        if (language === 'typescript' || language === 'tsx') {
-            grammar =
-                grammarMod[language] ??
-                    grammarMod['default'] ??
-                    grammarMod;
-        }
-        else {
-            grammar = grammarMod['default'] ?? grammarMod;
-        }
-        const parser = new _ParserCtor();
-        parser.setLanguage(grammar);
-        return parser;
-    }
-    catch {
-        return null;
-    }
-}
-// ---- depth-first AST walker ----
-export function walk(node, visitor) {
-    visitor(node);
-    for (const child of node.children) {
-        walk(child, visitor);
-    }
-}
-// ---- main entry point ----
-/**
- * Parses a source file and delegates to the given LanguageExtractor.
- * The extractor receives the file path and raw content; it owns the AST
- * traversal internally (using tryLoadParser / walk from this module).
- *
- * Falls back gracefully: if tree-sitter cannot be loaded the extractor is still
- * called with the raw content and is expected to use its regex fallback.
- */
-export function parseFile(filePath, content, extractor) {
-    try {
-        return extractor.extract(filePath, content);
-    }
-    catch (err) {
-        return {
-            nodes: [],
-            edges: [],
-            filesProcessed: 1,
-            fromCache: 0,
-            errors: [
-                `parseFile error for ${filePath}: ${err instanceof Error ? err.message : String(err)}`,
-            ],
-        };
-    }
-}
-/**
- * Convenience helper: read a file from disk and parse it.
- */
-export function parseFileFromDisk(filePath, extractor) {
-    let content;
-    try {
-        content = readFileSync(filePath, 'utf8');
-    }
-    catch (err) {
-        return {
-            nodes: [],
-            edges: [],
-            filesProcessed: 1,
-            fromCache: 0,
-            errors: [
-                `Failed to read ${filePath}: ${err instanceof Error ? err.message : String(err)}`,
-            ],
-        };
-    }
-    return parseFile(filePath, content, extractor);
-}
-//# sourceMappingURL=tree-sitter-runner.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/tree-sitter-runner.js.map

@@ -1 +0,0 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/extract/types.d.ts

@@ -1,7 +0,0 @@
-import type { ExtractionResult } from '../types.js';
-export interface LanguageExtractor {
-    language: string;
-    extensions: string[];
-    extract(filePath: string, content: string): ExtractionResult;
-}
-//# sourceMappingURL=types.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/types.d.ts.map

@@ -1 +0,0 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/extract/types.js

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=types.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/types.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/extract/types.ts"],"names":[],"mappings":""}

package/packages/@monomind/cli/bundled-graph/dist/src/index.d.ts

@@ -1,28 +0,0 @@
-export { buildGraph } from './pipeline.js';
-export { FileCache } from './cache.js';
-export { collectFiles, loadIgnorePatterns, corpusHealth } from './detect.js';
-export { buildGraph as buildGraphologyGraph } from './build.js';
-export { detectCommunities, cohesionScore, splitOversizedCommunities } from './cluster.js';
-export { buildAnalysis, godNodes, surprisingConnections, graphStats, suggestQuestions, graphDiff } from './analyze.js';
-export { saveGraph, loadGraph, graphExists, getGraphPath } from './export.js';
-export { exportHTML } from './visualize.js';
-export { generateReport } from './report.js';
-export { extractSemantic } from './extract/semantic.js';
-export type { SemanticFile, SemanticOptions } from './extract/semantic.js';
-export { isTreeSitterAvailable, tryLoadParser, parseFile, parseFileFromDisk } from './extract/tree-sitter-runner.js';
-export type { LanguageExtractor } from './extract/types.js';
-export { typescriptExtractor } from './extract/languages/typescript.js';
-export { pythonExtractor } from './extract/languages/python.js';
-export { goExtractor } from './extract/languages/go.js';
-export { rustExtractor } from './extract/languages/rust.js';
-export { javaExtractor } from './extract/languages/java.js';
-export { cExtractor } from './extract/languages/c.js';
-export { cppExtractor } from './extract/languages/cpp.js';
-export { csharpExtractor } from './extract/languages/csharp.js';
-export { rubyExtractor } from './extract/languages/ruby.js';
-export { kotlinExtractor } from './extract/languages/kotlin.js';
-export { swiftExtractor } from './extract/languages/swift.js';
-export { scalaExtractor } from './extract/languages/scala.js';
-export { phpExtractor } from './extract/languages/php.js';
-export type * from './types.js';
-//# sourceMappingURL=index.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/index.d.ts.map

@@ -1 +0,0 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/index.js

@@ -1,26 +0,0 @@
-export { buildGraph } from './pipeline.js';
-export { FileCache } from './cache.js';
-export { collectFiles, loadIgnorePatterns, corpusHealth } from './detect.js';
-export { buildGraph as buildGraphologyGraph } from './build.js';
-export { detectCommunities, cohesionScore, splitOversizedCommunities } from './cluster.js';
-export { buildAnalysis, godNodes, surprisingConnections, graphStats, suggestQuestions, graphDiff } from './analyze.js';
-export { saveGraph, loadGraph, graphExists, getGraphPath } from './export.js';
-export { exportHTML } from './visualize.js';
-export { generateReport } from './report.js';
-export { extractSemantic } from './extract/semantic.js';
-export { isTreeSitterAvailable, tryLoadParser, parseFile, parseFileFromDisk } from './extract/tree-sitter-runner.js';
-// Language extractors
-export { typescriptExtractor } from './extract/languages/typescript.js';
-export { pythonExtractor } from './extract/languages/python.js';
-export { goExtractor } from './extract/languages/go.js';
-export { rustExtractor } from './extract/languages/rust.js';
-export { javaExtractor } from './extract/languages/java.js';
-export { cExtractor } from './extract/languages/c.js';
-export { cppExtractor } from './extract/languages/cpp.js';
-export { csharpExtractor } from './extract/languages/csharp.js';
-export { rubyExtractor } from './extract/languages/ruby.js';
-export { kotlinExtractor } from './extract/languages/kotlin.js';
-export { swiftExtractor } from './extract/languages/swift.js';
-export { scalaExtractor } from './extract/languages/scala.js';
-export { phpExtractor } from './extract/languages/php.js';
-//# sourceMappingURL=index.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/index.js.map

@@ -1 +0,0 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/pipeline.d.ts

@@ -1,27 +0,0 @@
-import type { BuildOptions, GraphAnalysis, SerializedGraph, GraphQuestion } from './types.js';
-/**
- * Main entry point for building a knowledge graph from a codebase.
- *
- * Orchestrates file collection, per-file extraction (with caching),
- * graph construction via graphology, community detection, and serialisation.
- *
- * @param projectPath - Absolute path to the root of the codebase to analyse.
- * @param options     - Optional build configuration.
- * @returns           - Serialized graph + analysis summary.
- */
-export interface BuildResult {
-    graph: SerializedGraph;
-    analysis: GraphAnalysis;
-    questions: GraphQuestion[];
-    corpusWarnings: string[];
-    filesProcessed: number;
-    fromCache: number;
-    graphPath: string;
-    reportPath: string;
-    /** Graph quality scalar: avgCohesion × ln(1 + avgDegree). Higher is better. */
-    graphQuality: number;
-    /** Experiment loop status — mirrors autoresearch's keep/discard protocol. */
-    experimentStatus: 'BASELINE' | 'KEEP' | 'DISCARD';
-}
-export declare function buildGraph(projectPath: string, options?: BuildOptions): Promise<BuildResult>;
-//# sourceMappingURL=pipeline.d.ts.map

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package/packages/@monomind/cli/bundled-graph/dist/src/pipeline.js

@@ -1,269 +0,0 @@
-import { join } from 'path';
-import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';
-import { collectFiles, corpusHealth } from './detect.js';
-import { FileCache } from './cache.js';
-import { buildGraph as buildGraphologyGraph } from './build.js';
-import { detectCommunities, cohesionScore } from './cluster.js';
-import { buildAnalysis, suggestQuestions } from './analyze.js';
-import { saveGraph } from './export.js';
-import { exportHTML } from './visualize.js';
-import { generateReport } from './report.js';
-import { typescriptExtractor } from './extract/languages/typescript.js';
-import { parseFile } from './extract/tree-sitter-runner.js';
-const DEFAULT_OUTPUT_SUBDIR = '.monomind/graph';
-// ---------------------------------------------------------------------------
-// Experiment loop — adapted from autoresearch's program.md protocol
-//
-// Every buildGraph call appends one row to results.tsv with a quality scalar,
-// then decides BASELINE / KEEP / DISCARD by comparing against the best known
-// result.  The quality metric mirrors autoresearch's val_bpb (a single number
-// to optimise), but for graph structure rather than language model perplexity.
-// ---------------------------------------------------------------------------
-const RESULTS_TSV_HEADER = 'timestamp\tnodes\tedges\tcommunities\tavg_cohesion\tavg_degree\tgraph_quality\tfiles_processed\tstatus\tdescription\n';
-/**
- * Graph quality scalar.
- *
- * avgCohesion × ln(1 + avgDegree)
- *
- * Rewards both tight community structure (cohesion) and overall connectivity
- * (avgDegree).  Higher is better — directly comparable across builds, like
- * autoresearch's vocab-size-independent bits-per-byte metric.
- */
-function computeGraphQuality(avgCohesion, nodes, edges) {
-    const avgDegree = nodes > 0 ? (2 * edges) / nodes : 0;
-    return avgCohesion * Math.log(1 + avgDegree);
-}
-/** Read results.tsv and return the best graph_quality seen so far (BASELINE or KEEP rows). */
-function readBestQuality(tsvPath) {
-    if (!existsSync(tsvPath))
-        return -Infinity;
-    try {
-        const lines = readFileSync(tsvPath, 'utf-8').split('\n').filter(Boolean);
-        let best = -Infinity;
-        for (const line of lines.slice(1)) { // skip header
-            const cols = line.split('\t');
-            const status = cols[8]; // status column
-            const quality = parseFloat(cols[6] ?? '0'); // graph_quality column
-            if ((status === 'BASELINE' || status === 'KEEP') && !isNaN(quality)) {
-                if (quality > best)
-                    best = quality;
-            }
-        }
-        return best;
-    }
-    catch {
-        return -Infinity;
-    }
-}
-/** Append one experiment row to results.tsv. Creates file + header if needed. */
-function appendResultsTsv(tsvPath, metrics) {
-    const avgDegree = metrics.nodes > 0 ? (2 * metrics.edges) / metrics.nodes : 0;
-    const description = `${metrics.nodes}n/${metrics.edges}e coh=${metrics.avgCohesion.toFixed(3)} deg=${avgDegree.toFixed(1)}`;
-    const row = [
-        new Date().toISOString(),
-        metrics.nodes,
-        metrics.edges,
-        metrics.communities,
-        metrics.avgCohesion.toFixed(4),
-        avgDegree.toFixed(2),
-        metrics.graphQuality.toFixed(6),
-        metrics.filesProcessed,
-        metrics.status,
-        description,
-    ].join('\t') + '\n';
-    try {
-        if (!existsSync(tsvPath)) {
-            writeFileSync(tsvPath, RESULTS_TSV_HEADER + row, 'utf-8');
-        }
-        else {
-            const existing = readFileSync(tsvPath, 'utf-8');
-            writeFileSync(tsvPath, existing + row, 'utf-8');
-        }
-    }
-    catch { /* TSV tracking is non-fatal */ }
-}
-// Map language identifiers to the extractors we have available.
-// python and go extractors are loaded lazily when their modules exist.
-const EXTRACTOR_MAP = {
-    typescript: typescriptExtractor,
-    javascript: typescriptExtractor, // TS extractor handles JS via regex + tree-sitter-javascript
-};
-/** Attempt to load python/go extractors that may be present in the extract/languages dir. */
-async function tryLoadExtractor(language) {
-    if (EXTRACTOR_MAP[language])
-        return EXTRACTOR_MAP[language];
-    try {
-        const mod = await import(`./extract/languages/${language}.js`);
-        const extractor = (mod[`${language}Extractor`] ?? mod['default']);
-        if (extractor)
-            EXTRACTOR_MAP[language] = extractor;
-        return extractor;
-    }
-    catch {
-        return undefined;
-    }
-}
-export async function buildGraph(projectPath, options = {}) {
-    // Resolve output directory
-    const outputDir = options.outputDir ?? join(projectPath, DEFAULT_OUTPUT_SUBDIR);
-    mkdirSync(outputDir, { recursive: true });
-    const cache = new FileCache(outputDir);
-    // 1. Collect files + corpus health check
-    const files = collectFiles(projectPath, options);
-    const corpusWarnings = corpusHealth(files);
-    // 2. Extract nodes/edges from each file (cache-aware)
-    const merged = {
-        nodes: [],
-        edges: [],
-        hyperedges: [],
-        filesProcessed: 0,
-        fromCache: 0,
-        errors: [],
-    };
-    for (const file of files) {
-        let content;
-        try {
-            content = readFileSync(file.path, 'utf-8');
-        }
-        catch (err) {
-            merged.errors.push(`Cannot read ${file.path}: ${String(err)}`);
-            continue;
-        }
-        const cacheKey = cache.key(file.path, content);
-        let result = cache.get(cacheKey);
-        if (result) {
-            merged.fromCache += 1;
-        }
-        else {
-            const extractor = file.language
-                ? await tryLoadExtractor(file.language)
-                : undefined;
-            if (extractor) {
-                result = parseFile(file.path, content, extractor);
-            }
-            else {
-                result = extractGeneric(file.path, content);
-            }
-            cache.set(cacheKey, result);
-        }
-        merged.nodes.push(...result.nodes);
-        merged.edges.push(...result.edges);
-        if (result.hyperedges)
-            merged.hyperedges.push(...result.hyperedges);
-        merged.filesProcessed += 1;
-        merged.errors.push(...result.errors);
-    }
-    // 3. Build graphology graph (dedup + stub endpoints)
-    const graph = buildGraphologyGraph(merged);
-    // 4. Community detection (Louvain with directory-based fallback)
-    await detectCommunities(graph);
-    // 5. Degree annotation
-    graph.forEachNode((id) => {
-        graph.setNodeAttribute(id, 'degree', graph.degree(id));
-    });
-    // 6. Build analysis (god nodes, surprise edges, communities, stats)
-    const analysis = buildAnalysis(graph, outputDir);
-    // 6b. Suggest questions the graph can answer
-    const questions = suggestQuestions(graph, analysis.communities);
-    // 6c. Compute cohesion scores per community
-    const cohesionScores = {};
-    for (const [cidStr, memberIds] of Object.entries(analysis.communities)) {
-        cohesionScores[Number(cidStr)] = cohesionScore(graph, memberIds);
-    }
-    // 6d. Graph quality metric + experiment loop (autoresearch protocol)
-    const cohesionValues = Object.values(cohesionScores);
-    const avgCohesion = cohesionValues.length > 0
-        ? cohesionValues.reduce((a, b) => a + b, 0) / cohesionValues.length
-        : 0;
-    const graphQuality = computeGraphQuality(avgCohesion, graph.order, graph.size);
-    const tsvPath = join(outputDir, 'results.tsv');
-    const prevBest = readBestQuality(tsvPath);
-    const experimentStatus = prevBest === -Infinity
-        ? 'BASELINE'
-        : graphQuality > prevBest * 1.001 // 0.1% improvement threshold
-            ? 'KEEP'
-            : 'DISCARD';
-    appendResultsTsv(tsvPath, {
-        nodes: graph.order,
-        edges: graph.size,
-        communities: analysis.stats.communities,
-        avgCohesion,
-        graphQuality,
-        filesProcessed: merged.filesProcessed,
-        status: experimentStatus,
-    });
-    // 7. Persist to disk
-    saveGraph(graph, outputDir, projectPath);
-    const graphPath = join(outputDir, 'graph.json');
-    // 7b. Generate and save markdown report (non-fatal)
-    const reportPath = join(outputDir, 'GRAPH_REPORT.md');
-    try {
-        const totalWords = merged.nodes.reduce((sum, n) => sum + (n.linesOfCode ?? 0) * 10, 0);
-        const reportMd = generateReport(graph, analysis, cohesionScores, {
-            projectPath,
-            questions,
-            corpusStats: corpusWarnings.length > 0
-                ? { totalFiles: files.length, totalWords, warning: corpusWarnings[0] }
-                : { totalFiles: files.length, totalWords },
-        });
-        writeFileSync(reportPath, reportMd, 'utf-8');
-    }
-    catch { /* report generation is non-fatal */ }
-    // 8. Serialize to the public return type
-    const serialized = {
-        version: '1.0.0',
-        builtAt: new Date().toISOString(),
-        projectPath,
-        directed: true,
-        multigraph: false,
-        nodes: graph.nodes().map((id) => ({
-            id,
-            ...graph.getNodeAttributes(id),
-        })),
-        links: graph.edges().map((edgeId) => ({
-            source: graph.source(edgeId),
-            target: graph.target(edgeId),
-            ...graph.getEdgeAttributes(edgeId),
-        })),
-    };
-    // 9. Generate interactive HTML visualization (non-fatal)
-    try {
-        exportHTML(serialized, outputDir);
-    }
-    catch {
-        // Visualization is best-effort; never block the build
-    }
-    return {
-        graph: serialized,
-        analysis,
-        questions,
-        corpusWarnings,
-        filesProcessed: merged.filesProcessed,
-        fromCache: merged.fromCache,
-        graphPath,
-        reportPath,
-        graphQuality,
-        experimentStatus,
-    };
-}
-// ---------------------------------------------------------------------------
-// Internal: minimal fallback for languages without a dedicated extractor
-// ---------------------------------------------------------------------------
-function extractGeneric(filePath, content) {
-    return {
-        nodes: [
-            {
-                id: filePath,
-                label: filePath.split('/').pop() ?? filePath,
-                fileType: 'code',
-                sourceFile: filePath,
-                linesOfCode: content.split('\n').length,
-            },
-        ],
-        edges: [],
-        filesProcessed: 1,
-        fromCache: 0,
-        errors: [],
-    };
-}
-//# sourceMappingURL=pipeline.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/pipeline.js.map

@@ -1 +0,0 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/report.d.ts

@@ -1,26 +0,0 @@
-import type Graph from 'graphology';
-import type { GraphAnalysis, GraphQuestion } from './types.js';
-export interface CorpusStats {
-    totalFiles: number;
-    totalWords: number;
-    warning?: string;
-}
-export interface ReportOptions {
-    projectPath?: string;
-    tokenCost?: {
-        input: number;
-        output: number;
-    };
-    corpusStats?: CorpusStats;
-    questions?: GraphQuestion[];
-}
-/**
- * Generate the full markdown report string.
- *
- * @param graph     - The annotated Graphology graph (with `community` attributes set)
- * @param analysis  - Result of buildAnalysis()
- * @param cohesionScores - Map of communityId → cohesion score (0–1)
- * @param options   - Optional metadata (projectPath, tokenCost, corpusStats, questions)
- */
-export declare function generateReport(graph: Graph, analysis: GraphAnalysis, cohesionScores?: Record<number, number>, options?: ReportOptions): string;
-//# sourceMappingURL=report.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/report.d.ts.map

@@ -1 +0,0 @@
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