monomind 1.10.0 → 1.10.2

package/packages/@monomind/cli/bundled-graph/dist/src/extract/semantic.js

@@ -0,0 +1,242 @@
+// ---------------------------------------------------------------------------
+// Prompt template (mirrors graphify skill.md lines 253-303)
+// ---------------------------------------------------------------------------
+function buildPrompt(files, mode, chunkNum, totalChunks) {
+    const deepInstructions = mode === 'deep'
+        ? '\nDEEP MODE: be aggressive with INFERRED edges - indirect deps, shared assumptions, latent couplings. Mark uncertain ones AMBIGUOUS instead of omitting.\n'
+        : '';
+    const fileList = files
+        .map((f) => `--- file: ${f.relPath} ---\n${f.content.slice(0, 6000)}\n---`)
+        .join('\n\n');
+    return `You are a graphify extraction subagent. Read the files listed and extract a knowledge graph fragment.
+Output ONLY valid JSON matching the schema below - no explanation, no markdown fences, no preamble.
+
+Files (chunk ${chunkNum} of ${totalChunks}):
+${fileList}
+
+Rules:
+- EXTRACTED: relationship explicit in source (import, call, citation, "see §3.2")
+- INFERRED: reasonable inference (shared data structure, implied dependency)
+- AMBIGUOUS: uncertain - flag for review, do not omit
+
+Code files: focus on semantic edges AST cannot find (call relationships, shared data, arch patterns).
+  Do not re-extract imports - AST already has those.
+Doc/paper files: extract named concepts, entities, citations. Also extract rationale — sections that explain WHY a decision was made, trade-offs chosen, or design intent. These become nodes with "rationale_for" edges pointing to the concept they explain.
+${deepInstructions}
+Semantic similarity: if two concepts in this chunk solve the same problem or represent the same idea without any structural link, add a "semantically_similar_to" edge marked INFERRED with a confidence_score reflecting how similar they are (0.6-0.95). Only add these when the similarity is genuinely non-obvious and cross-cutting.
+
+Hyperedges: if 3 or more nodes clearly participate together in a shared concept, flow, or pattern not captured by pairwise edges, add a hyperedge to the "hyperedges" array. Use sparingly — maximum 3 hyperedges per chunk.
+
+If a file has YAML frontmatter (--- ... ---), copy source_url, captured_at, author, contributor onto every node from that file.
+
+confidence_score is REQUIRED on every edge:
+- EXTRACTED edges: confidence_score = 1.0 always
+- INFERRED edges: Direct structural evidence: 0.8-0.9. Reasonable with uncertainty: 0.6-0.7. Weak/speculative: 0.4-0.5.
+- AMBIGUOUS edges: 0.1-0.3
+
+Output exactly this JSON (no other text):
+{"nodes":[{"id":"filestem_entityname","label":"Human Readable Name","file_type":"code|document|paper|image","source_file":"relative/path","source_location":null,"source_url":null,"captured_at":null,"author":null,"contributor":null}],"edges":[{"source":"node_id","target":"node_id","relation":"calls|implements|references|cites|conceptually_related_to|shares_data_with|semantically_similar_to|rationale_for","confidence":"EXTRACTED|INFERRED|AMBIGUOUS","confidence_score":1.0,"source_file":"relative/path","source_location":null,"weight":1.0}],"hyperedges":[{"id":"snake_case_id","label":"Human Readable Label","nodes":["node_id1","node_id2","node_id3"],"relation":"participate_in|implement|form","confidence":"EXTRACTED|INFERRED","confidence_score":0.75,"source_file":"relative/path"}],"input_tokens":0,"output_tokens":0}`;
+}
+async function callClaude(prompt, apiKey, model, maxTokens) {
+    const response = await fetch('https://api.anthropic.com/v1/messages', {
+        method: 'POST',
+        headers: {
+            'Content-Type': 'application/json',
+            'x-api-key': apiKey,
+            'anthropic-version': '2023-06-01',
+        },
+        body: JSON.stringify({
+            model,
+            max_tokens: maxTokens,
+            messages: [{ role: 'user', content: prompt }],
+        }),
+    });
+    if (!response.ok) {
+        const body = await response.text();
+        throw new Error(`Anthropic API error ${response.status}: ${body}`);
+    }
+    const msg = (await response.json());
+    const text = msg.content.find((c) => c.type === 'text')?.text ?? '';
+    return {
+        text,
+        inputTokens: msg.usage?.input_tokens ?? 0,
+        outputTokens: msg.usage?.output_tokens ?? 0,
+    };
+}
+function parseChunkResult(text, chunkFiles) {
+    // Strip markdown fences if model added them despite instructions
+    const cleaned = text.replace(/^```json\s*/i, '').replace(/\s*```\s*$/, '').trim();
+    let raw;
+    try {
+        raw = JSON.parse(cleaned);
+    }
+    catch {
+        return { nodes: [], edges: [], hyperedges: [], inputTokens: 0, outputTokens: 0 };
+    }
+    const fileSet = new Set(chunkFiles.map((f) => f.relPath));
+    const nodes = (raw.nodes ?? [])
+        .filter((n) => typeof n === 'object' && n !== null)
+        .map((n) => ({
+        id: String(n['id'] ?? ''),
+        label: String(n['label'] ?? n['id'] ?? ''),
+        fileType: n['file_type'] ?? 'document',
+        sourceFile: String(n['source_file'] ?? ''),
+        sourceLocation: n['source_location'] ?? undefined,
+        // Extra metadata from YAML frontmatter
+        ...(n['source_url'] ? { sourceUrl: n['source_url'] } : {}),
+        ...(n['captured_at'] ? { capturedAt: n['captured_at'] } : {}),
+        ...(n['author'] ? { author: n['author'] } : {}),
+    }))
+        .filter((n) => n.id && fileSet.has(n.sourceFile));
+    const edges = (raw.edges ?? [])
+        .filter((e) => typeof e === 'object' && e !== null)
+        .map((e) => ({
+        source: String(e['source'] ?? ''),
+        target: String(e['target'] ?? ''),
+        relation: String(e['relation'] ?? 'references'),
+        confidence: e['confidence'] ?? 'INFERRED',
+        confidenceScore: typeof e['confidence_score'] === 'number' ? e['confidence_score'] : 0.7,
+        sourceFile: e['source_file'] ?? undefined,
+        weight: typeof e['weight'] === 'number' ? e['weight'] : 1.0,
+    }))
+        .filter((e) => e.source && e.target);
+    const hyperedges = (raw.hyperedges ?? [])
+        .filter((h) => typeof h === 'object' && h !== null)
+        .map((h) => ({
+        label: String(h['label'] ?? h['id'] ?? ''),
+        nodes: Array.isArray(h['nodes']) ? h['nodes'] : [],
+        confidence: h['confidence'] ?? 'INFERRED',
+        confidenceScore: typeof h['confidence_score'] === 'number' ? h['confidence_score'] : 0.7,
+    }))
+        .filter((h) => h.label && h.nodes.length >= 2);
+    return {
+        nodes,
+        edges,
+        hyperedges,
+        inputTokens: raw.input_tokens ?? 0,
+        outputTokens: raw.output_tokens ?? 0,
+    };
+}
+// ---------------------------------------------------------------------------
+// Best-Fit Decreasing (BFD) chunk packing — from autoresearch experiment loop
+//
+// Instead of slicing files into equal-sized groups, BFD estimates the token
+// count of each file, sorts descending, and packs into bins that stay under
+// targetTokens.  This mirrors the document-packing dataloader in autoresearch
+// (best-fit + zero-waste) and produces denser, fairer prompts than fixed chunks.
+// ---------------------------------------------------------------------------
+/**
+ * Pack `files` into chunks using First-Fit Decreasing bin packing.
+ *
+ * Each file's token estimate = min(content.length / 4, 1500)
+ * (the prompt already truncates each file to 6000 chars = ~1500 tokens).
+ *
+ * @param files         - Files to pack
+ * @param targetTokens  - Soft upper bound on tokens per chunk (default 30 000)
+ * @returns             - Array of chunks; each chunk is an array of files
+ */
+function packChunksBFD(files, targetTokens) {
+    // Estimate tokens per file — capped at the 6 000-char prompt truncation limit
+    const sized = files.map((f) => ({
+        file: f,
+        tokens: Math.min(Math.ceil(f.content.length / 4), 1500),
+    }));
+    // Sort descending so large files get placed first (First Fit Decreasing)
+    sized.sort((a, b) => b.tokens - a.tokens);
+    const bins = [];
+    for (const item of sized) {
+        let placed = false;
+        for (const bin of bins) {
+            if (bin.tokens + item.tokens <= targetTokens) {
+                bin.files.push(item.file);
+                bin.tokens += item.tokens;
+                placed = true;
+                break;
+            }
+        }
+        if (!placed) {
+            // File is too large (or bins are all full) — open a new bin
+            bins.push({ files: [item.file], tokens: item.tokens });
+        }
+    }
+    return bins.map((b) => b.files);
+}
+// ---------------------------------------------------------------------------
+// Main export
+// ---------------------------------------------------------------------------
+/**
+ * Run semantic extraction on a set of files using the Anthropic Claude API.
+ *
+ * Returns an empty ExtractionResult (not an error) when:
+ * - No API key is available
+ * - The API call fails
+ *
+ * Only document/paper files benefit from semantic extraction.
+ * Code files may be included but the prompt instructs Claude not to re-extract imports.
+ */
+export async function extractSemantic(files, options = {}) {
+    const apiKey = options.apiKey ?? process.env['ANTHROPIC_API_KEY'] ?? '';
+    if (!apiKey) {
+        return { nodes: [], edges: [], hyperedges: [], filesProcessed: 0, fromCache: 0, errors: ['ANTHROPIC_API_KEY not set — semantic extraction skipped'] };
+    }
+    const model = options.model ?? 'claude-haiku-4-5-20251001';
+    const mode = options.mode ?? 'fast';
+    const maxTokens = options.maxTokens ?? 8192;
+    // BFD packing — targetChunkTokens defaults to 30 000 (~20 avg files × 1500 tok each).
+    // Fallback to legacy chunkSize if targetChunkTokens is not set and chunkSize was specified,
+    // so callers that relied on chunkSize still get predictable behaviour.
+    const targetChunkTokens = options.targetChunkTokens
+        ?? (options.chunkSize ? options.chunkSize * 1500 : 30_000);
+    // Time budget — undefined = no limit (run all chunks)
+    const deadline = options.timeBudget ? Date.now() + options.timeBudget : Infinity;
+    const allNodes = [];
+    const allEdges = [];
+    const allHyperedges = [];
+    const errors = [];
+    let totalInput = 0;
+    let totalOutput = 0;
+    // Pack files into token-aware chunks using BFD (replaces fixed equal-size slicing)
+    const chunks = packChunksBFD(files, targetChunkTokens);
+    for (let i = 0; i < chunks.length; i++) {
+        // Time budget enforcement — mirrors autoresearch's 5-min wall-clock limit
+        if (Date.now() > deadline) {
+            errors.push(`Time budget (${options.timeBudget}ms) exceeded after chunk ${i}/${chunks.length} — partial results returned`);
+            break;
+        }
+        const chunk = chunks[i];
+        const prompt = buildPrompt(chunk, mode, i + 1, chunks.length);
+        try {
+            const { text, inputTokens, outputTokens } = await callClaude(prompt, apiKey, model, maxTokens);
+            totalInput += inputTokens;
+            totalOutput += outputTokens;
+            const parsed = parseChunkResult(text, chunk);
+            allNodes.push(...parsed.nodes);
+            allEdges.push(...parsed.edges);
+            allHyperedges.push(...parsed.hyperedges);
+        }
+        catch (err) {
+            errors.push(`Chunk ${i + 1}/${chunks.length} failed: ${err instanceof Error ? err.message : String(err)}`);
+        }
+    }
+    // Deduplicate nodes by id
+    const seenNodeIds = new Set();
+    const dedupedNodes = allNodes.filter((n) => {
+        if (seenNodeIds.has(n.id))
+            return false;
+        seenNodeIds.add(n.id);
+        return true;
+    });
+    // Attach token totals as extra fields for report generation
+    const result = {
+        nodes: dedupedNodes,
+        edges: allEdges,
+        hyperedges: allHyperedges,
+        filesProcessed: files.length,
+        fromCache: 0,
+        errors,
+        inputTokens: totalInput,
+        outputTokens: totalOutput,
+    };
+    return result;
+}
+//# sourceMappingURL=semantic.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/semantic.js.map

@@ -0,0 +1 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/extract/tree-sitter-runner.d.ts

@@ -0,0 +1,48 @@
+import type { ExtractionResult } from '../types.js';
+import type { LanguageExtractor } from './types.js';
+type ParserInstance = {
+    setLanguage(lang: unknown): void;
+    parse(src: string): {
+        rootNode: SyntaxNodeLike;
+    };
+};
+export type SyntaxNodeLike = {
+    type: string;
+    text: string;
+    startPosition: {
+        row: number;
+        column: number;
+    };
+    endPosition: {
+        row: number;
+        column: number;
+    };
+    children: SyntaxNodeLike[];
+    childForFieldName(name: string): SyntaxNodeLike | null;
+    descendantsOfType(type: string | string[]): SyntaxNodeLike[];
+};
+/**
+ * Returns true when node-tree-sitter is installed and loadable.
+ */
+export declare function isTreeSitterAvailable(): boolean;
+/**
+ * Attempts to create a configured Parser for the given language identifier.
+ * Returns null when tree-sitter or the grammar is not installed.
+ */
+export declare function tryLoadParser(language: string): ParserInstance | null;
+export declare function walk(node: SyntaxNodeLike, visitor: (n: SyntaxNodeLike) => void): void;
+/**
+ * Parses a source file and delegates to the given LanguageExtractor.
+ * The extractor receives the file path and raw content; it owns the AST
+ * traversal internally (using tryLoadParser / walk from this module).
+ *
+ * Falls back gracefully: if tree-sitter cannot be loaded the extractor is still
+ * called with the raw content and is expected to use its regex fallback.
+ */
+export declare function parseFile(filePath: string, content: string, extractor: LanguageExtractor): ExtractionResult;
+/**
+ * Convenience helper: read a file from disk and parse it.
+ */
+export declare function parseFileFromDisk(filePath: string, extractor: LanguageExtractor): ExtractionResult;
+export {};
+//# sourceMappingURL=tree-sitter-runner.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/tree-sitter-runner.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"tree-sitter-runner.d.ts","sourceRoot":"","sources":["../../../src/extract/tree-sitter-runner.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AACpD,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAIpD,KAAK,cAAc,GAAG;IACpB,WAAW,CAAC,IAAI,EAAE,OAAO,GAAG,IAAI,CAAC;IACjC,KAAK,CAAC,GAAG,EAAE,MAAM,GAAG;QAAE,QAAQ,EAAE,cAAc,CAAA;KAAE,CAAC;CAClD,CAAC;AAEF,MAAM,MAAM,cAAc,GAAG;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;IAC/C,WAAW,EAAE;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;IAC7C,QAAQ,EAAE,cAAc,EAAE,CAAC;IAC3B,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,cAAc,GAAG,IAAI,CAAC;IACvD,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,cAAc,EAAE,CAAC;CAC9D,CAAC;AA4BF;;GAEG;AACH,wBAAgB,qBAAqB,IAAI,OAAO,CAG/C;AAuBD;;;GAGG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,cAAc,GAAG,IAAI,CA2BrE;AAID,wBAAgB,IAAI,CAClB,IAAI,EAAE,cAAc,EACpB,OAAO,EAAE,CAAC,CAAC,EAAE,cAAc,KAAK,IAAI,GACnC,IAAI,CAKN;AAID;;;;;;;GAOG;AACH,wBAAgB,SAAS,CACvB,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,MAAM,EACf,SAAS,EAAE,iBAAiB,GAC3B,gBAAgB,CAclB;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAC/B,QAAQ,EAAE,MAAM,EAChB,SAAS,EAAE,iBAAiB,GAC3B,gBAAgB,CAgBlB"}

package/packages/@monomind/cli/bundled-graph/dist/src/extract/tree-sitter-runner.js

@@ -0,0 +1,137 @@
+import { readFileSync } from 'fs';
+// ---- availability probe ----
+let _treeSitterAvailable = null;
+let _ParserCtor = null;
+function probeTreeSitter() {
+    if (_treeSitterAvailable !== null)
+        return;
+    try {
+        // eslint-disable-next-line @typescript-eslint/no-var-requires
+        const mod = require('node-tree-sitter');
+        const ctor = mod.default !== undefined
+            ? mod.default
+            : mod;
+        if (typeof ctor === 'function') {
+            _ParserCtor = ctor;
+            _treeSitterAvailable = true;
+        }
+        else {
+            _treeSitterAvailable = false;
+        }
+    }
+    catch {
+        _treeSitterAvailable = false;
+    }
+}
+/**
+ * Returns true when node-tree-sitter is installed and loadable.
+ */
+export function isTreeSitterAvailable() {
+    probeTreeSitter();
+    return _treeSitterAvailable === true;
+}
+// ---- language grammar loader ----
+const LANGUAGE_MODULE_MAP = {
+    typescript: 'tree-sitter-typescript',
+    tsx: 'tree-sitter-typescript',
+    javascript: 'tree-sitter-javascript',
+    jsx: 'tree-sitter-javascript',
+    python: 'tree-sitter-python',
+    go: 'tree-sitter-go',
+    rust: 'tree-sitter-rust',
+    java: 'tree-sitter-java',
+    c: 'tree-sitter-c',
+    cpp: 'tree-sitter-cpp',
+    csharp: 'tree-sitter-c-sharp',
+    ruby: 'tree-sitter-ruby',
+    kotlin: 'tree-sitter-kotlin',
+    swift: 'tree-sitter-swift',
+    scala: 'tree-sitter-scala',
+    php: 'tree-sitter-php',
+};
+/**
+ * Attempts to create a configured Parser for the given language identifier.
+ * Returns null when tree-sitter or the grammar is not installed.
+ */
+export function tryLoadParser(language) {
+    if (!isTreeSitterAvailable() || _ParserCtor === null)
+        return null;
+    const moduleName = LANGUAGE_MODULE_MAP[language];
+    if (!moduleName)
+        return null;
+    try {
+        // eslint-disable-next-line @typescript-eslint/no-var-requires
+        const grammarMod = require(moduleName);
+        // tree-sitter-typescript exposes { typescript, tsx } sub-grammars
+        let grammar;
+        if (language === 'typescript' || language === 'tsx') {
+            grammar =
+                grammarMod[language] ??
+                    grammarMod['default'] ??
+                    grammarMod;
+        }
+        else {
+            grammar = grammarMod['default'] ?? grammarMod;
+        }
+        const parser = new _ParserCtor();
+        parser.setLanguage(grammar);
+        return parser;
+    }
+    catch {
+        return null;
+    }
+}
+// ---- depth-first AST walker ----
+export function walk(node, visitor) {
+    visitor(node);
+    for (const child of node.children) {
+        walk(child, visitor);
+    }
+}
+// ---- main entry point ----
+/**
+ * Parses a source file and delegates to the given LanguageExtractor.
+ * The extractor receives the file path and raw content; it owns the AST
+ * traversal internally (using tryLoadParser / walk from this module).
+ *
+ * Falls back gracefully: if tree-sitter cannot be loaded the extractor is still
+ * called with the raw content and is expected to use its regex fallback.
+ */
+export function parseFile(filePath, content, extractor) {
+    try {
+        return extractor.extract(filePath, content);
+    }
+    catch (err) {
+        return {
+            nodes: [],
+            edges: [],
+            filesProcessed: 1,
+            fromCache: 0,
+            errors: [
+                `parseFile error for ${filePath}: ${err instanceof Error ? err.message : String(err)}`,
+            ],
+        };
+    }
+}
+/**
+ * Convenience helper: read a file from disk and parse it.
+ */
+export function parseFileFromDisk(filePath, extractor) {
+    let content;
+    try {
+        content = readFileSync(filePath, 'utf8');
+    }
+    catch (err) {
+        return {
+            nodes: [],
+            edges: [],
+            filesProcessed: 1,
+            fromCache: 0,
+            errors: [
+                `Failed to read ${filePath}: ${err instanceof Error ? err.message : String(err)}`,
+            ],
+        };
+    }
+    return parseFile(filePath, content, extractor);
+}
+//# sourceMappingURL=tree-sitter-runner.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/tree-sitter-runner.js.map

@@ -0,0 +1 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/extract/types.d.ts

@@ -0,0 +1,7 @@
+import type { ExtractionResult } from '../types.js';
+export interface LanguageExtractor {
+    language: string;
+    extensions: string[];
+    extract(filePath: string, content: string): ExtractionResult;
+}
+//# sourceMappingURL=types.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/extract/types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAEpD,MAAM,WAAW,iBAAiB;IAChC,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,OAAO,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,gBAAgB,CAAC;CAC9D"}

package/packages/@monomind/cli/bundled-graph/dist/src/extract/types.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=types.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/extract/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/extract/types.ts"],"names":[],"mappings":""}

package/packages/@monomind/cli/bundled-graph/dist/src/index.d.ts

@@ -0,0 +1,28 @@
+export { buildGraph } from './pipeline.js';
+export { FileCache } from './cache.js';
+export { collectFiles, loadIgnorePatterns, corpusHealth } from './detect.js';
+export { buildGraph as buildGraphologyGraph } from './build.js';
+export { detectCommunities, cohesionScore, splitOversizedCommunities } from './cluster.js';
+export { buildAnalysis, godNodes, surprisingConnections, graphStats, suggestQuestions, graphDiff } from './analyze.js';
+export { saveGraph, loadGraph, graphExists, getGraphPath } from './export.js';
+export { exportHTML } from './visualize.js';
+export { generateReport } from './report.js';
+export { extractSemantic } from './extract/semantic.js';
+export type { SemanticFile, SemanticOptions } from './extract/semantic.js';
+export { isTreeSitterAvailable, tryLoadParser, parseFile, parseFileFromDisk } from './extract/tree-sitter-runner.js';
+export type { LanguageExtractor } from './extract/types.js';
+export { typescriptExtractor } from './extract/languages/typescript.js';
+export { pythonExtractor } from './extract/languages/python.js';
+export { goExtractor } from './extract/languages/go.js';
+export { rustExtractor } from './extract/languages/rust.js';
+export { javaExtractor } from './extract/languages/java.js';
+export { cExtractor } from './extract/languages/c.js';
+export { cppExtractor } from './extract/languages/cpp.js';
+export { csharpExtractor } from './extract/languages/csharp.js';
+export { rubyExtractor } from './extract/languages/ruby.js';
+export { kotlinExtractor } from './extract/languages/kotlin.js';
+export { swiftExtractor } from './extract/languages/swift.js';
+export { scalaExtractor } from './extract/languages/scala.js';
+export { phpExtractor } from './extract/languages/php.js';
+export type * from './types.js';
+//# sourceMappingURL=index.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/index.d.ts.map

@@ -0,0 +1 @@
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package/packages/@monomind/cli/bundled-graph/dist/src/index.js

@@ -0,0 +1,26 @@
+export { buildGraph } from './pipeline.js';
+export { FileCache } from './cache.js';
+export { collectFiles, loadIgnorePatterns, corpusHealth } from './detect.js';
+export { buildGraph as buildGraphologyGraph } from './build.js';
+export { detectCommunities, cohesionScore, splitOversizedCommunities } from './cluster.js';
+export { buildAnalysis, godNodes, surprisingConnections, graphStats, suggestQuestions, graphDiff } from './analyze.js';
+export { saveGraph, loadGraph, graphExists, getGraphPath } from './export.js';
+export { exportHTML } from './visualize.js';
+export { generateReport } from './report.js';
+export { extractSemantic } from './extract/semantic.js';
+export { isTreeSitterAvailable, tryLoadParser, parseFile, parseFileFromDisk } from './extract/tree-sitter-runner.js';
+// Language extractors
+export { typescriptExtractor } from './extract/languages/typescript.js';
+export { pythonExtractor } from './extract/languages/python.js';
+export { goExtractor } from './extract/languages/go.js';
+export { rustExtractor } from './extract/languages/rust.js';
+export { javaExtractor } from './extract/languages/java.js';
+export { cExtractor } from './extract/languages/c.js';
+export { cppExtractor } from './extract/languages/cpp.js';
+export { csharpExtractor } from './extract/languages/csharp.js';
+export { rubyExtractor } from './extract/languages/ruby.js';
+export { kotlinExtractor } from './extract/languages/kotlin.js';
+export { swiftExtractor } from './extract/languages/swift.js';
+export { scalaExtractor } from './extract/languages/scala.js';
+export { phpExtractor } from './extract/languages/php.js';
+//# sourceMappingURL=index.js.map

package/packages/@monomind/cli/bundled-graph/dist/src/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAC3C,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AACvC,OAAO,EAAE,YAAY,EAAE,kBAAkB,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC7E,OAAO,EAAE,UAAU,IAAI,oBAAoB,EAAE,MAAM,YAAY,CAAC;AAChE,OAAO,EAAE,iBAAiB,EAAE,aAAa,EAAE,yBAAyB,EAAE,MAAM,cAAc,CAAC;AAC3F,OAAO,EAAE,aAAa,EAAE,QAAQ,EAAE,qBAAqB,EAAE,UAAU,EAAE,gBAAgB,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AACvH,OAAO,EAAE,SAAS,EAAE,SAAS,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC9E,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAC5C,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAC7C,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AAExD,OAAO,EAAE,qBAAqB,EAAE,aAAa,EAAE,SAAS,EAAE,iBAAiB,EAAE,MAAM,iCAAiC,CAAC;AAErH,sBAAsB;AACtB,OAAO,EAAE,mBAAmB,EAAE,MAAM,mCAAmC,CAAC;AACxE,OAAO,EAAE,eAAe,EAAE,MAAM,+BAA+B,CAAC;AAChE,OAAO,EAAE,WAAW,EAAE,MAAM,2BAA2B,CAAC;AACxD,OAAO,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAC;AAC5D,OAAO,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAC;AAC5D,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AAC1D,OAAO,EAAE,eAAe,EAAE,MAAM,+BAA+B,CAAC;AAChE,OAAO,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAC;AAC5D,OAAO,EAAE,eAAe,EAAE,MAAM,+BAA+B,CAAC;AAChE,OAAO,EAAE,cAAc,EAAE,MAAM,8BAA8B,CAAC;AAC9D,OAAO,EAAE,cAAc,EAAE,MAAM,8BAA8B,CAAC;AAC9D,OAAO,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC"}

package/packages/@monomind/cli/bundled-graph/dist/src/pipeline.d.ts

@@ -0,0 +1,27 @@
+import type { BuildOptions, GraphAnalysis, SerializedGraph, GraphQuestion } from './types.js';
+/**
+ * Main entry point for building a knowledge graph from a codebase.
+ *
+ * Orchestrates file collection, per-file extraction (with caching),
+ * graph construction via graphology, community detection, and serialisation.
+ *
+ * @param projectPath - Absolute path to the root of the codebase to analyse.
+ * @param options     - Optional build configuration.
+ * @returns           - Serialized graph + analysis summary.
+ */
+export interface BuildResult {
+    graph: SerializedGraph;
+    analysis: GraphAnalysis;
+    questions: GraphQuestion[];
+    corpusWarnings: string[];
+    filesProcessed: number;
+    fromCache: number;
+    graphPath: string;
+    reportPath: string;
+    /** Graph quality scalar: avgCohesion × ln(1 + avgDegree). Higher is better. */
+    graphQuality: number;
+    /** Experiment loop status — mirrors autoresearch's keep/discard protocol. */
+    experimentStatus: 'BASELINE' | 'KEEP' | 'DISCARD';
+}
+export declare function buildGraph(projectPath: string, options?: BuildOptions): Promise<BuildResult>;
+//# sourceMappingURL=pipeline.d.ts.map

package/packages/@monomind/cli/bundled-graph/dist/src/pipeline.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../src/pipeline.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EACV,YAAY,EAEZ,aAAa,EACb,eAAe,EACf,aAAa,EACd,MAAM,YAAY,CAAC;AA2HpB;;;;;;;;;GASG;AACH,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,eAAe,CAAC;IACvB,QAAQ,EAAE,aAAa,CAAC;IACxB,SAAS,EAAE,aAAa,EAAE,CAAC;IAC3B,cAAc,EAAE,MAAM,EAAE,CAAC;IACzB,cAAc,EAAE,MAAM,CAAC;IACvB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,+EAA+E;IAC/E,YAAY,EAAE,MAAM,CAAC;IACrB,6EAA6E;IAC7E,gBAAgB,EAAE,UAAU,GAAG,MAAM,GAAG,SAAS,CAAC;CACnD;AAED,wBAAsB,UAAU,CAC9B,WAAW,EAAE,MAAM,EACnB,OAAO,GAAE,YAAiB,GACzB,OAAO,CAAC,WAAW,CAAC,CA+JtB"}