molstar 4.1.0 → 4.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
- package/lib/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/generic/preset.js +3 -3
- package/lib/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
- package/lib/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
- package/lib/apps/mesoscale-explorer/data/state.d.ts +10 -1
- package/lib/apps/mesoscale-explorer/data/state.js +14 -2
- package/lib/apps/mesoscale-explorer/ui/entities.d.ts +7 -1
- package/lib/apps/mesoscale-explorer/ui/entities.js +23 -4
- package/lib/apps/viewer/app.d.ts +8 -2
- package/lib/apps/viewer/app.js +6 -6
- package/lib/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +3 -3
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
- package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +10 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/state.js +15 -3
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +7 -1
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +22 -3
- package/lib/commonjs/apps/viewer/app.d.ts +8 -2
- package/lib/commonjs/apps/viewer/app.js +6 -6
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +5 -0
- package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
- package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +6 -4
- package/lib/commonjs/extensions/mvs/camera.d.ts +2 -0
- package/lib/commonjs/extensions/mvs/camera.js +29 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +2 -0
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +2 -0
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -0
- package/lib/commonjs/extensions/mvs/components/formats.d.ts +2 -0
- package/lib/commonjs/extensions/mvs/components/formats.js +2 -1
- package/lib/commonjs/extensions/mvs/load.d.ts +2 -0
- package/lib/commonjs/extensions/mvs/load.js +12 -6
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/bloom.d.ts +37 -0
- package/lib/commonjs/mol-canvas3d/passes/bloom.js +272 -0
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +11 -7
- package/lib/commonjs/mol-canvas3d/passes/draw.js +23 -3
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +6 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +30 -5
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +27 -32
- package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -1
- package/lib/commonjs/mol-geo/geometry/base.js +4 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
- package/lib/commonjs/mol-geo/geometry/emissive-data.d.ts +26 -0
- package/lib/commonjs/mol-geo/geometry/emissive-data.js +80 -0
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +3 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +4 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +36 -2
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +4 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/points/points.js +4 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +7 -3
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js +4 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +34 -2
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +24 -1
- package/lib/commonjs/mol-gl/renderable/schema.js +15 -2
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable.d.ts +1 -1
- package/lib/commonjs/mol-gl/renderable.js +2 -2
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderer.js +58 -49
- package/lib/commonjs/mol-gl/scene.d.ts +3 -1
- package/lib/commonjs/mol-gl/scene.js +26 -1
- package/lib/commonjs/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
- package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +32 -0
- package/lib/commonjs/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
- package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +37 -0
- package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
- package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +56 -0
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +10 -2
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +28 -0
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +20 -31
- package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
- package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +20 -0
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +9 -0
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +30 -0
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -0
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +4 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +17 -11
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/image.frag.js +14 -5
- package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/lines.frag.js +4 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +4 -1
- package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/points.frag.js +9 -5
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +11 -5
- package/lib/commonjs/mol-gl/shader/ssao-blur.frag.d.ts +3 -2
- package/lib/commonjs/mol-gl/shader/ssao-blur.frag.js +7 -8
- package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +3 -2
- package/lib/commonjs/mol-gl/shader/ssao.frag.js +56 -17
- package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/text.frag.js +6 -4
- package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +9 -3
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.d.ts +9 -6
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +7 -4
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +10 -6
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit.js +5 -2
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +4 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +6 -3
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -208
- package/lib/commonjs/mol-plugin-state/helpers/structure-emissive.d.ts +12 -0
- package/lib/commonjs/mol-plugin-state/helpers/structure-emissive.js +69 -0
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +3 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +9 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +341 -9
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +32 -19
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +25 -0
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +121 -6
- package/lib/commonjs/mol-repr/representation.d.ts +6 -2
- package/lib/commonjs/mol-repr/representation.js +12 -2
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/complex-representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-representation.js +7 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +8 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.js +5 -1
- package/lib/commonjs/mol-repr/structure/params.d.ts +8 -0
- package/lib/commonjs/mol-repr/structure/registry.d.ts +14 -0
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/units-representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/units-representation.js +9 -3
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +9 -1
- package/lib/commonjs/mol-repr/structure/units-visual.js +5 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/visual.d.ts +6 -1
- package/lib/commonjs/mol-repr/visual.js +55 -1
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +3 -0
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +6 -0
- package/lib/commonjs/mol-repr/volume/registry.d.ts +4 -0
- package/lib/commonjs/mol-repr/volume/representation.d.ts +2 -1
- package/lib/commonjs/mol-repr/volume/representation.js +9 -2
- package/lib/commonjs/mol-repr/volume/segment.d.ts +5 -0
- package/lib/commonjs/mol-repr/volume/slice.d.ts +3 -0
- package/lib/commonjs/mol-theme/emissive.d.ts +40 -0
- package/lib/commonjs/mol-theme/emissive.js +137 -0
- package/lib/commonjs/mol-util/set.d.ts +1 -1
- package/lib/commonjs/mol-util/set.js +17 -1
- package/lib/extensions/anvil/behavior.d.ts +1 -0
- package/lib/extensions/anvil/representation.d.ts +5 -0
- package/lib/extensions/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/extensions/assembly-symmetry/representation.d.ts +1 -0
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
- package/lib/extensions/geo-export/glb-exporter.d.ts +1 -1
- package/lib/extensions/geo-export/glb-exporter.js +6 -4
- package/lib/extensions/mvs/camera.d.ts +2 -0
- package/lib/extensions/mvs/camera.js +27 -1
- package/lib/extensions/mvs/components/annotation-label/representation.d.ts +2 -0
- package/lib/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
- package/lib/extensions/mvs/components/custom-label/representation.d.ts +2 -0
- package/lib/extensions/mvs/components/custom-label/visual.d.ts +1 -0
- package/lib/extensions/mvs/components/formats.d.ts +2 -0
- package/lib/extensions/mvs/components/formats.js +2 -1
- package/lib/extensions/mvs/load.d.ts +2 -0
- package/lib/extensions/mvs/load.js +13 -7
- package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/mol-canvas3d/canvas3d.d.ts +14 -0
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/mol-canvas3d/passes/bloom.d.ts +37 -0
- package/lib/mol-canvas3d/passes/bloom.js +268 -0
- package/lib/mol-canvas3d/passes/draw.d.ts +11 -7
- package/lib/mol-canvas3d/passes/draw.js +23 -3
- package/lib/mol-canvas3d/passes/image.d.ts +6 -0
- package/lib/mol-canvas3d/passes/postprocessing.d.ts +30 -5
- package/lib/mol-canvas3d/passes/postprocessing.js +25 -31
- package/lib/mol-geo/geometry/base.d.ts +3 -1
- package/lib/mol-geo/geometry/base.js +4 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.js +4 -1
- package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
- package/lib/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
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- package/lib/mol-geo/geometry/image/image.js +4 -1
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- package/lib/mol-geo/geometry/lines/lines.js +4 -1
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- package/lib/mol-geo/geometry/mesh/color-smoothing.js +34 -1
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- package/lib/mol-geo/geometry/mesh/mesh.js +4 -1
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- package/lib/mol-geo/geometry/points/points.js +4 -1
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- package/lib/mol-geo/geometry/spheres/spheres.js +7 -3
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- package/lib/mol-geo/geometry/text/text.js +4 -1
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- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +32 -1
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- package/lib/mol-gl/renderable/schema.js +14 -1
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- package/lib/mol-gl/shader/bloom/blur.frag.js +29 -0
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- package/lib/mol-gl/shader/bloom/composite.frag.js +34 -0
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- package/lib/mol-gl/shader/bloom/luminosity.frag.js +53 -0
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +10 -2
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +28 -0
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +20 -31
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- package/lib/mol-gl/shader/chunks/check-transparency.glsl.js +17 -0
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +9 -0
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +30 -0
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -0
- package/lib/mol-gl/shader/cylinders.frag.d.ts +2 -2
- package/lib/mol-gl/shader/cylinders.frag.js +4 -1
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +17 -11
- package/lib/mol-gl/shader/image.frag.d.ts +2 -2
- package/lib/mol-gl/shader/image.frag.js +14 -5
- package/lib/mol-gl/shader/lines.frag.d.ts +2 -2
- package/lib/mol-gl/shader/lines.frag.js +4 -1
- package/lib/mol-gl/shader/mesh.frag.d.ts +2 -2
- package/lib/mol-gl/shader/mesh.frag.js +4 -1
- package/lib/mol-gl/shader/points.frag.d.ts +2 -2
- package/lib/mol-gl/shader/points.frag.js +9 -5
- package/lib/mol-gl/shader/spheres.frag.d.ts +2 -2
- package/lib/mol-gl/shader/spheres.frag.js +11 -5
- package/lib/mol-gl/shader/ssao-blur.frag.d.ts +3 -2
- package/lib/mol-gl/shader/ssao-blur.frag.js +7 -8
- package/lib/mol-gl/shader/ssao.frag.d.ts +3 -2
- package/lib/mol-gl/shader/ssao.frag.js +56 -17
- package/lib/mol-gl/shader/text.frag.d.ts +2 -2
- package/lib/mol-gl/shader/text.frag.js +6 -4
- package/lib/mol-gl/shader-code.d.ts +1 -1
- package/lib/mol-gl/shader-code.js +9 -3
- package/lib/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/mol-gl/webgl/render-item.js +1 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/data.d.ts +9 -6
- package/lib/mol-model/structure/structure/unit/bonds/data.js +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +7 -4
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +10 -6
- package/lib/mol-model/structure/structure/unit.d.ts +1 -1
- package/lib/mol-model/structure/structure/unit.js +5 -2
- package/lib/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/mol-model-formats/structure/property/bonds/index-pair.d.ts +4 -1
- package/lib/mol-model-formats/structure/property/bonds/index-pair.js +6 -3
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/mol-plugin/commands.d.ts +1 -208
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/helpers/structure-emissive.d.ts +12 -0
- package/lib/mol-plugin-state/helpers/structure-emissive.js +64 -0
- package/lib/mol-plugin-state/manager/structure/component.d.ts +3 -1
- package/lib/mol-plugin-state/manager/structure/component.js +9 -1
- package/lib/mol-plugin-state/manager/structure/measurement.d.ts +341 -9
- package/lib/mol-plugin-state/manager/structure/measurement.js +32 -19
- package/lib/mol-plugin-state/transforms/representation.d.ts +25 -0
- package/lib/mol-plugin-state/transforms/representation.js +120 -5
- package/lib/mol-repr/representation.d.ts +6 -2
- package/lib/mol-repr/representation.js +12 -2
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/mol-repr/shape/loci/common.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
- package/lib/mol-repr/shape/loci/label.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/mol-repr/structure/complex-representation.d.ts +1 -1
- package/lib/mol-repr/structure/complex-representation.js +7 -1
- package/lib/mol-repr/structure/complex-visual.d.ts +8 -1
- package/lib/mol-repr/structure/complex-visual.js +5 -1
- package/lib/mol-repr/structure/params.d.ts +8 -0
- package/lib/mol-repr/structure/registry.d.ts +14 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/mol-repr/structure/representation/label.d.ts +3 -0
- package/lib/mol-repr/structure/representation/line.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/mol-repr/structure/representation/point.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/mol-repr/structure/units-representation.d.ts +1 -1
- package/lib/mol-repr/structure/units-representation.js +9 -3
- package/lib/mol-repr/structure/units-visual.d.ts +9 -1
- package/lib/mol-repr/structure/units-visual.js +5 -1
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
- package/lib/mol-repr/structure/visual/label-text.d.ts +1 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/mol-repr/visual.d.ts +6 -1
- package/lib/mol-repr/visual.js +57 -3
- package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
- package/lib/mol-repr/volume/isosurface.d.ts +6 -0
- package/lib/mol-repr/volume/registry.d.ts +4 -0
- package/lib/mol-repr/volume/representation.d.ts +2 -1
- package/lib/mol-repr/volume/representation.js +9 -2
- package/lib/mol-repr/volume/segment.d.ts +5 -0
- package/lib/mol-repr/volume/slice.d.ts +3 -0
- package/lib/mol-theme/emissive.d.ts +40 -0
- package/lib/mol-theme/emissive.js +134 -0
- package/lib/mol-util/set.d.ts +1 -1
- package/lib/mol-util/set.js +17 -1
- package/package.json +19 -18
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@@ -586,6 +597,7 @@ export declare namespace StructureRepresentationRegistry {
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@@ -674,6 +687,7 @@ export declare namespace StructureRepresentationRegistry {
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@@ -41,6 +41,7 @@ export declare const BackboneParams: {
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@@ -40,6 +40,7 @@ export declare const CartoonParams: {
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@@ -40,6 +40,7 @@ export declare const GaussianVolumeParams: {
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@@ -117,6 +119,7 @@ export declare const GaussianVolumeRepresentationProvider: StructureRepresentati
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@@ -53,6 +53,7 @@ export declare const SpacefillParams: {
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|
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|
}>[];
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|
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|
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|
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|
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|
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|
|
@@ -106,6 +107,7 @@ export declare function getSpacefillParams(ctx: ThemeRegistryContext, structure:
|
|
|
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|
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|
|
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|
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|
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|
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|
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|
|
@@ -160,6 +162,7 @@ export declare const SpacefillRepresentationProvider: StructureRepresentationPro
|
|
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|
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|
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|
}>[];
|
|
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|
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|
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|
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|
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|
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|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
* @author David Sehnal <david.sehnal@gmail.com>
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
/**
|
|
3
|
-
* Copyright (c) 2018-
|
|
3
|
+
* Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
4
4
|
*
|
|
5
5
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
6
6
|
* @author David Sehnal <david.sehnal@gmail.com>
|
|
@@ -23,6 +23,7 @@ const linear_algebra_1 = require("../../mol-math/linear-algebra");
|
|
|
23
23
|
const int_1 = require("../../mol-data/int");
|
|
24
24
|
const clipping_1 = require("../../mol-theme/clipping");
|
|
25
25
|
const substance_1 = require("../../mol-theme/substance");
|
|
26
|
+
const emissive_1 = require("../../mol-theme/emissive");
|
|
26
27
|
function UnitsRepresentation(label, ctx, getParams, visualCtor) {
|
|
27
28
|
let version = 0;
|
|
28
29
|
const { webgl } = ctx;
|
|
@@ -243,7 +244,7 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
|
|
|
243
244
|
return changed;
|
|
244
245
|
}
|
|
245
246
|
function setVisualState(visual, group, state) {
|
|
246
|
-
const { visible, alphaFactor, pickable, overpaint, transparency, substance, clipping, themeStrength, transform, unitTransforms } = state;
|
|
247
|
+
const { visible, alphaFactor, pickable, overpaint, transparency, emissive, substance, clipping, themeStrength, transform, unitTransforms } = state;
|
|
247
248
|
if (visible !== undefined)
|
|
248
249
|
visual.setVisibility(visible);
|
|
249
250
|
if (alphaFactor !== undefined)
|
|
@@ -254,6 +255,8 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
|
|
|
254
255
|
visual.setOverpaint(overpaint, webgl);
|
|
255
256
|
if (transparency !== undefined)
|
|
256
257
|
visual.setTransparency(transparency, webgl);
|
|
258
|
+
if (emissive !== undefined)
|
|
259
|
+
visual.setEmissive(emissive, webgl);
|
|
257
260
|
if (substance !== undefined)
|
|
258
261
|
visual.setSubstance(substance, webgl);
|
|
259
262
|
if (clipping !== undefined)
|
|
@@ -276,7 +279,7 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
|
|
|
276
279
|
}
|
|
277
280
|
}
|
|
278
281
|
function setState(state) {
|
|
279
|
-
const { visible, alphaFactor, pickable, overpaint, transparency, substance, clipping, themeStrength, transform, unitTransforms, syncManually, markerActions } = state;
|
|
282
|
+
const { visible, alphaFactor, pickable, overpaint, transparency, emissive, substance, clipping, themeStrength, transform, unitTransforms, syncManually, markerActions } = state;
|
|
280
283
|
const newState = {};
|
|
281
284
|
if (visible !== undefined)
|
|
282
285
|
newState.visible = visible;
|
|
@@ -290,6 +293,9 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
|
|
|
290
293
|
if (transparency !== undefined && _structure) {
|
|
291
294
|
newState.transparency = transparency_1.Transparency.remap(transparency, _structure);
|
|
292
295
|
}
|
|
296
|
+
if (emissive !== undefined && _structure) {
|
|
297
|
+
newState.emissive = emissive_1.Emissive.remap(emissive, _structure);
|
|
298
|
+
}
|
|
293
299
|
if (substance !== undefined && _structure) {
|
|
294
300
|
newState.substance = substance_1.Substance.remap(substance, _structure);
|
|
295
301
|
}
|