molstar 3.7.0 → 3.8.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (253) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +0 -15
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/viewer/embedded.html +43 -43
  9. package/lib/apps/viewer/index.html +106 -106
  10. package/lib/cli/chem-comp-dict/create-ions.d.ts +2 -1
  11. package/lib/cli/chem-comp-dict/create-ions.js +3 -2
  12. package/lib/cli/cifschema/index.js +1 -1
  13. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  14. package/lib/commonjs/cli/chem-comp-dict/create-ions.d.ts +2 -1
  15. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +3 -2
  16. package/lib/commonjs/cli/cifschema/index.js +1 -1
  17. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  18. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +20 -5
  19. package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +284 -0
  20. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +1 -1
  21. package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -4
  22. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  23. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +7 -5
  24. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  25. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +7 -5
  26. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +4 -8
  27. package/lib/commonjs/mol-canvas3d/passes/draw.js +60 -103
  28. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +1 -1
  29. package/lib/commonjs/mol-canvas3d/passes/pick.js +1 -3
  30. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  31. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +17 -12
  32. package/lib/commonjs/mol-geo/geometry/color-data.d.ts +5 -2
  33. package/lib/commonjs/mol-geo/geometry/color-data.js +7 -17
  34. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  35. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
  36. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -0
  37. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
  38. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  39. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
  40. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  41. package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +1 -1
  42. package/lib/commonjs/mol-geo/geometry/transparency-data.js +3 -1
  43. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -1
  44. package/lib/commonjs/mol-gl/renderable/cylinders.js +1 -1
  45. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +1 -1
  46. package/lib/commonjs/mol-gl/renderable/mesh.js +1 -1
  47. package/lib/commonjs/mol-gl/renderable/schema.d.ts +2 -2
  48. package/lib/commonjs/mol-gl/renderable/schema.js +2 -2
  49. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -1
  50. package/lib/commonjs/mol-gl/renderable/spheres.js +1 -1
  51. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +1 -1
  52. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
  53. package/lib/commonjs/mol-gl/renderer.d.ts +5 -5
  54. package/lib/commonjs/mol-gl/renderer.js +64 -45
  55. package/lib/commonjs/mol-gl/scene.d.ts +2 -1
  56. package/lib/commonjs/mol-gl/scene.js +44 -11
  57. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
  58. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
  59. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  60. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  61. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
  62. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
  63. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  64. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  65. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  66. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  67. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  68. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  69. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  70. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  71. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  72. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  73. package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +3 -2
  74. package/lib/commonjs/mol-gl/shader/outlines.frag.js +3 -2
  75. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  76. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  77. package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +2 -2
  78. package/lib/commonjs/mol-gl/shader/ssao.frag.js +2 -2
  79. package/lib/commonjs/mol-gl/webgl/program.js +10 -1
  80. package/lib/commonjs/mol-gl/webgl/render-target.d.ts +3 -1
  81. package/lib/commonjs/mol-gl/webgl/render-target.js +3 -1
  82. package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +2 -1
  83. package/lib/commonjs/mol-gl/webgl/renderbuffer.js +8 -1
  84. package/lib/commonjs/mol-gl/webgl/state.d.ts +7 -1
  85. package/lib/commonjs/mol-gl/webgl/state.js +28 -1
  86. package/lib/commonjs/mol-gl/webgl/texture.js +3 -0
  87. package/lib/commonjs/mol-gl/webgl/uniform.d.ts +1 -0
  88. package/lib/commonjs/mol-gl/webgl/uniform.js +5 -1
  89. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
  90. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
  91. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  92. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
  93. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
  94. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +1 -1
  95. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
  96. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +2 -3
  97. package/lib/commonjs/mol-io/reader/dx/parser.js +1 -1
  98. package/lib/commonjs/mol-math/geometry/lookup3d/grid.d.ts +1 -1
  99. package/lib/commonjs/mol-math/geometry/lookup3d/grid.js +3 -3
  100. package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
  101. package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.js +2 -1
  102. package/lib/commonjs/mol-model/structure/model/types/ions.d.ts +2 -2
  103. package/lib/commonjs/mol-model/structure/model/types/ions.js +2 -2
  104. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
  105. package/lib/commonjs/mol-model/structure/model/types.d.ts +1 -1
  106. package/lib/commonjs/mol-model/structure/model/types.js +43 -41
  107. package/lib/commonjs/mol-model-formats/structure/common/property.js +2 -0
  108. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
  109. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +2 -2
  110. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  111. package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +3 -1
  112. package/lib/commonjs/mol-repr/volume/slice.js +1 -1
  113. package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
  114. package/lib/commonjs/mol-theme/color/volume-value.d.ts +3 -2
  115. package/lib/commonjs/mol-theme/color/volume-value.js +1 -3
  116. package/lib/commonjs/mol-theme/color.d.ts +47 -38
  117. package/lib/commonjs/mol-theme/theme.d.ts +8 -7
  118. package/lib/commonjs/mol-theme/theme.js +1 -1
  119. package/lib/examples/alpha-orbitals/index.html +61 -61
  120. package/lib/examples/basic-wrapper/index.html +137 -137
  121. package/lib/examples/lighting/index.html +88 -88
  122. package/lib/examples/proteopedia-wrapper/coloring.d.ts +20 -5
  123. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  124. package/lib/extensions/rcsb/graphql/types.d.ts +284 -0
  125. package/lib/mol-canvas3d/canvas3d.d.ts +1 -1
  126. package/lib/mol-canvas3d/canvas3d.js +4 -4
  127. package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  128. package/lib/mol-canvas3d/helper/camera-helper.js +8 -6
  129. package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  130. package/lib/mol-canvas3d/helper/handle-helper.js +8 -6
  131. package/lib/mol-canvas3d/passes/draw.d.ts +4 -8
  132. package/lib/mol-canvas3d/passes/draw.js +57 -100
  133. package/lib/mol-canvas3d/passes/pick.d.ts +1 -1
  134. package/lib/mol-canvas3d/passes/pick.js +1 -3
  135. package/lib/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  136. package/lib/mol-canvas3d/passes/postprocessing.js +17 -12
  137. package/lib/mol-geo/geometry/color-data.d.ts +5 -2
  138. package/lib/mol-geo/geometry/color-data.js +7 -17
  139. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  140. package/lib/mol-geo/geometry/cylinders/cylinders.js +2 -2
  141. package/lib/mol-geo/geometry/lines/lines.d.ts +1 -0
  142. package/lib/mol-geo/geometry/mesh/mesh.js +2 -2
  143. package/lib/mol-geo/geometry/points/points.d.ts +1 -1
  144. package/lib/mol-geo/geometry/spheres/spheres.js +2 -2
  145. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  146. package/lib/mol-geo/geometry/transparency-data.d.ts +1 -1
  147. package/lib/mol-geo/geometry/transparency-data.js +3 -1
  148. package/lib/mol-gl/renderable/cylinders.d.ts +1 -1
  149. package/lib/mol-gl/renderable/cylinders.js +1 -1
  150. package/lib/mol-gl/renderable/mesh.d.ts +1 -1
  151. package/lib/mol-gl/renderable/mesh.js +1 -1
  152. package/lib/mol-gl/renderable/schema.d.ts +2 -2
  153. package/lib/mol-gl/renderable/schema.js +2 -2
  154. package/lib/mol-gl/renderable/spheres.d.ts +1 -1
  155. package/lib/mol-gl/renderable/spheres.js +1 -1
  156. package/lib/mol-gl/renderable/texture-mesh.d.ts +1 -1
  157. package/lib/mol-gl/renderable/texture-mesh.js +1 -1
  158. package/lib/mol-gl/renderer.d.ts +5 -5
  159. package/lib/mol-gl/renderer.js +64 -45
  160. package/lib/mol-gl/scene.d.ts +2 -1
  161. package/lib/mol-gl/scene.js +44 -11
  162. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
  163. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
  164. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  165. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  166. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
  167. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
  168. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  169. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  170. package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  171. package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
  172. package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  173. package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  174. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  175. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  176. package/lib/mol-gl/shader/image.frag.d.ts +1 -1
  177. package/lib/mol-gl/shader/image.frag.js +1 -1
  178. package/lib/mol-gl/shader/outlines.frag.d.ts +3 -2
  179. package/lib/mol-gl/shader/outlines.frag.js +3 -2
  180. package/lib/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  181. package/lib/mol-gl/shader/postprocessing.frag.js +1 -1
  182. package/lib/mol-gl/shader/ssao.frag.d.ts +2 -2
  183. package/lib/mol-gl/shader/ssao.frag.js +2 -2
  184. package/lib/mol-gl/webgl/program.js +11 -2
  185. package/lib/mol-gl/webgl/render-target.d.ts +3 -1
  186. package/lib/mol-gl/webgl/render-target.js +3 -1
  187. package/lib/mol-gl/webgl/renderbuffer.d.ts +2 -1
  188. package/lib/mol-gl/webgl/renderbuffer.js +8 -1
  189. package/lib/mol-gl/webgl/state.d.ts +7 -1
  190. package/lib/mol-gl/webgl/state.js +28 -1
  191. package/lib/mol-gl/webgl/texture.js +3 -0
  192. package/lib/mol-gl/webgl/uniform.d.ts +1 -0
  193. package/lib/mol-gl/webgl/uniform.js +3 -0
  194. package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
  195. package/lib/mol-io/reader/cif/schema/bird.js +1 -1
  196. package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  197. package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
  198. package/lib/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
  199. package/lib/mol-io/reader/cif/schema/cif-core.js +1 -1
  200. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
  201. package/lib/mol-io/reader/cif/schema/mmcif.js +2 -3
  202. package/lib/mol-io/reader/dx/parser.js +1 -1
  203. package/lib/mol-math/geometry/lookup3d/grid.d.ts +1 -1
  204. package/lib/mol-math/geometry/lookup3d/grid.js +3 -3
  205. package/lib/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
  206. package/lib/mol-model/structure/model/properties/seconday-structure.js +2 -1
  207. package/lib/mol-model/structure/model/types/ions.d.ts +2 -2
  208. package/lib/mol-model/structure/model/types/ions.js +2 -2
  209. package/lib/mol-model/structure/model/types/saccharides.js +1 -1
  210. package/lib/mol-model/structure/model/types.d.ts +1 -1
  211. package/lib/mol-model/structure/model/types.js +43 -41
  212. package/lib/mol-model-formats/structure/common/property.js +2 -0
  213. package/lib/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
  214. package/lib/mol-model-formats/structure/property/secondary-structure.js +2 -2
  215. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  216. package/lib/mol-plugin/version.js +2 -2
  217. package/lib/mol-plugin-state/helpers/root-structure.js +3 -1
  218. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  219. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  220. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  221. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  222. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  223. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  224. package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
  225. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  226. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  227. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  228. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  229. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  230. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +128 -128
  231. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  232. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  233. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  234. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  235. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  236. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  237. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  238. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  239. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  240. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  241. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  242. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  243. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  244. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  245. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  246. package/lib/mol-repr/volume/slice.js +1 -1
  247. package/lib/mol-script/language/builder.d.ts +0 -1
  248. package/lib/mol-theme/color/volume-value.d.ts +3 -2
  249. package/lib/mol-theme/color/volume-value.js +2 -4
  250. package/lib/mol-theme/color.d.ts +47 -38
  251. package/lib/mol-theme/theme.d.ts +8 -7
  252. package/lib/mol-theme/theme.js +1 -1
  253. package/package.json +162 -162
package/lib/mol-plugin-ui/skin/base/base.scss CHANGED
@@ -1,33 +1,33 @@
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- 
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- @mixin user-select($select) {
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- -webkit-user-select: $select;
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- -moz-user-select: $select;
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- -ms-user-select: $select; // IE10+
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- user-select: $select;
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- }
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-
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- .msp-plugin {
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- font-family: "Helvetica Neue", "Segoe UI", Helvetica, "Source Sans Pro", Arial, sans-serif;
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- font-size: 14px;
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- line-height: 1.42857143;
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-
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- position: absolute;
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- left: 0;
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- top: 0;
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- right: 0;
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- bottom: 0;
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-
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- @import 'variables';
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-
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- @import "normalize";
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-
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- @import 'layout';
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- @import 'ui';
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- @import 'logo';
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-
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- .msp-plugin-content {
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- color: $font-color;
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- }
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-
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- background: $default-background;
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+ 
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+ @mixin user-select($select) {
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+ -webkit-user-select: $select;
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+ -moz-user-select: $select;
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+ -ms-user-select: $select; // IE10+
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+ user-select: $select;
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+ }
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+
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+ .msp-plugin {
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+ font-family: "Helvetica Neue", "Segoe UI", Helvetica, "Source Sans Pro", Arial, sans-serif;
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+ font-size: 14px;
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+ line-height: 1.42857143;
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+
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+ position: absolute;
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+ left: 0;
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+ top: 0;
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+ right: 0;
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+ bottom: 0;
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+
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+ @import 'variables';
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+
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+ @import "normalize";
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+
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+ @import 'layout';
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+ @import 'ui';
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+ @import 'logo';
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+
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+ .msp-plugin-content {
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+ color: $font-color;
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+ }
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+
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+ background: $default-background;
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  }