molstar 3.7.0 → 3.8.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +202 -202
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +106 -106
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +0 -15
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.html +106 -106
- package/lib/cli/chem-comp-dict/create-ions.d.ts +2 -1
- package/lib/cli/chem-comp-dict/create-ions.js +3 -2
- package/lib/cli/cifschema/index.js +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/cli/chem-comp-dict/create-ions.d.ts +2 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +3 -2
- package/lib/commonjs/cli/cifschema/index.js +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +20 -5
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +284 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -4
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +7 -5
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +7 -5
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +4 -8
- package/lib/commonjs/mol-canvas3d/passes/draw.js +60 -103
- package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/passes/pick.js +1 -3
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +17 -12
- package/lib/commonjs/mol-geo/geometry/color-data.d.ts +5 -2
- package/lib/commonjs/mol-geo/geometry/color-data.js +7 -17
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +3 -1
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-gl/renderable/cylinders.js +1 -1
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +1 -1
- package/lib/commonjs/mol-gl/renderable/mesh.js +1 -1
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +2 -2
- package/lib/commonjs/mol-gl/renderable/schema.js +2 -2
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -1
- package/lib/commonjs/mol-gl/renderable/spheres.js +1 -1
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +1 -1
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +5 -5
- package/lib/commonjs/mol-gl/renderer.js +64 -45
- package/lib/commonjs/mol-gl/scene.d.ts +2 -1
- package/lib/commonjs/mol-gl/scene.js +44 -11
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +3 -2
- package/lib/commonjs/mol-gl/shader/outlines.frag.js +3 -2
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/ssao.frag.js +2 -2
- package/lib/commonjs/mol-gl/webgl/program.js +10 -1
- package/lib/commonjs/mol-gl/webgl/render-target.d.ts +3 -1
- package/lib/commonjs/mol-gl/webgl/render-target.js +3 -1
- package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +2 -1
- package/lib/commonjs/mol-gl/webgl/renderbuffer.js +8 -1
- package/lib/commonjs/mol-gl/webgl/state.d.ts +7 -1
- package/lib/commonjs/mol-gl/webgl/state.js +28 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +3 -0
- package/lib/commonjs/mol-gl/webgl/uniform.d.ts +1 -0
- package/lib/commonjs/mol-gl/webgl/uniform.js +5 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +2 -3
- package/lib/commonjs/mol-io/reader/dx/parser.js +1 -1
- package/lib/commonjs/mol-math/geometry/lookup3d/grid.d.ts +1 -1
- package/lib/commonjs/mol-math/geometry/lookup3d/grid.js +3 -3
- package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
- package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.js +2 -1
- package/lib/commonjs/mol-model/structure/model/types/ions.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/model/types/ions.js +2 -2
- package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/types.js +43 -41
- package/lib/commonjs/mol-model-formats/structure/common/property.js +2 -0
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +2 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +3 -1
- package/lib/commonjs/mol-repr/volume/slice.js +1 -1
- package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
- package/lib/commonjs/mol-theme/color/volume-value.d.ts +3 -2
- package/lib/commonjs/mol-theme/color/volume-value.js +1 -3
- package/lib/commonjs/mol-theme/color.d.ts +47 -38
- package/lib/commonjs/mol-theme/theme.d.ts +8 -7
- package/lib/commonjs/mol-theme/theme.js +1 -1
- package/lib/examples/alpha-orbitals/index.html +61 -61
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/coloring.d.ts +20 -5
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/rcsb/graphql/types.d.ts +284 -0
- package/lib/mol-canvas3d/canvas3d.d.ts +1 -1
- package/lib/mol-canvas3d/canvas3d.js +4 -4
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -1
- package/lib/mol-canvas3d/helper/camera-helper.js +8 -6
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/mol-canvas3d/helper/handle-helper.js +8 -6
- package/lib/mol-canvas3d/passes/draw.d.ts +4 -8
- package/lib/mol-canvas3d/passes/draw.js +57 -100
- package/lib/mol-canvas3d/passes/pick.d.ts +1 -1
- package/lib/mol-canvas3d/passes/pick.js +1 -3
- package/lib/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/mol-canvas3d/passes/postprocessing.js +17 -12
- package/lib/mol-geo/geometry/color-data.d.ts +5 -2
- package/lib/mol-geo/geometry/color-data.js +7 -17
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/mol-geo/geometry/lines/lines.d.ts +1 -0
- package/lib/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/mol-geo/geometry/transparency-data.d.ts +1 -1
- package/lib/mol-geo/geometry/transparency-data.js +3 -1
- package/lib/mol-gl/renderable/cylinders.d.ts +1 -1
- package/lib/mol-gl/renderable/cylinders.js +1 -1
- package/lib/mol-gl/renderable/mesh.d.ts +1 -1
- package/lib/mol-gl/renderable/mesh.js +1 -1
- package/lib/mol-gl/renderable/schema.d.ts +2 -2
- package/lib/mol-gl/renderable/schema.js +2 -2
- package/lib/mol-gl/renderable/spheres.d.ts +1 -1
- package/lib/mol-gl/renderable/spheres.js +1 -1
- package/lib/mol-gl/renderable/texture-mesh.d.ts +1 -1
- package/lib/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/mol-gl/renderer.d.ts +5 -5
- package/lib/mol-gl/renderer.js +64 -45
- package/lib/mol-gl/scene.d.ts +2 -1
- package/lib/mol-gl/scene.js +44 -11
- package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/mol-gl/shader/image.frag.js +1 -1
- package/lib/mol-gl/shader/outlines.frag.d.ts +3 -2
- package/lib/mol-gl/shader/outlines.frag.js +3 -2
- package/lib/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/mol-gl/shader/ssao.frag.d.ts +2 -2
- package/lib/mol-gl/shader/ssao.frag.js +2 -2
- package/lib/mol-gl/webgl/program.js +11 -2
- package/lib/mol-gl/webgl/render-target.d.ts +3 -1
- package/lib/mol-gl/webgl/render-target.js +3 -1
- package/lib/mol-gl/webgl/renderbuffer.d.ts +2 -1
- package/lib/mol-gl/webgl/renderbuffer.js +8 -1
- package/lib/mol-gl/webgl/state.d.ts +7 -1
- package/lib/mol-gl/webgl/state.js +28 -1
- package/lib/mol-gl/webgl/texture.js +3 -0
- package/lib/mol-gl/webgl/uniform.d.ts +1 -0
- package/lib/mol-gl/webgl/uniform.js +3 -0
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/cif-core.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
- package/lib/mol-io/reader/cif/schema/mmcif.js +2 -3
- package/lib/mol-io/reader/dx/parser.js +1 -1
- package/lib/mol-math/geometry/lookup3d/grid.d.ts +1 -1
- package/lib/mol-math/geometry/lookup3d/grid.js +3 -3
- package/lib/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
- package/lib/mol-model/structure/model/properties/seconday-structure.js +2 -1
- package/lib/mol-model/structure/model/types/ions.d.ts +2 -2
- package/lib/mol-model/structure/model/types/ions.js +2 -2
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/model/types.d.ts +1 -1
- package/lib/mol-model/structure/model/types.js +43 -41
- package/lib/mol-model-formats/structure/common/property.js +2 -0
- package/lib/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
- package/lib/mol-model-formats/structure/property/secondary-structure.js +2 -2
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/helpers/root-structure.js +3 -1
- package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +128 -128
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-repr/volume/slice.js +1 -1
- package/lib/mol-script/language/builder.d.ts +0 -1
- package/lib/mol-theme/color/volume-value.d.ts +3 -2
- package/lib/mol-theme/color/volume-value.js +2 -4
- package/lib/mol-theme/color.d.ts +47 -38
- package/lib/mol-theme/theme.d.ts +8 -7
- package/lib/mol-theme/theme.js +1 -1
- package/package.json +162 -162
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import { Color } from '../mol-util/color';
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import { Location } from '../mol-model/location';
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import { ColorType } from '../mol-geo/geometry/color-data';
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import { ColorType, ColorTypeDirect, ColorTypeGrid, ColorTypeLocation } from '../mol-geo/geometry/color-data';
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import { ParamDefinition as PD } from '../mol-util/param-definition';
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import { ThemeDataContext, ThemeRegistry, ThemeProvider } from './theme';
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import { ScaleLegend, TableLegend } from '../mol-util/legend';
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@@ -18,12 +18,9 @@ export interface ColorVolume {
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transform: Vec4;
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}
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export { ColorTheme };
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readonly factory: ColorTheme.Factory<P>;
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readonly granularity: ColorType;
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readonly color: LocationColor;
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declare type ColorThemeShared<P extends PD.Params, G extends ColorType> = {
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readonly factory: ColorTheme.Factory<P, G>;
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readonly props: Readonly<PD.Values<P>>;
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readonly grid?: ColorVolume;
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* if palette is defined, 24bit RGB color value normalized to interval [0, 1]
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* is used as index to the colors
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readonly description?: string;
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}
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};
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declare type ColorThemeLocation<P extends PD.Params> = {
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readonly granularity: ColorTypeLocation;
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readonly color: LocationColor;
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} & ColorThemeShared<P, ColorTypeLocation>;
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declare type ColorThemeGrid<P extends PD.Params> = {
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readonly granularity: ColorTypeGrid;
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readonly grid: ColorVolume;
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} & ColorThemeShared<P, ColorTypeGrid>;
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declare type ColorThemeDirect<P extends PD.Params> = {
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readonly granularity: ColorTypeDirect;
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} & ColorThemeShared<P, ColorTypeDirect>;
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declare type ColorTheme<P extends PD.Params, G extends ColorType = ColorTypeLocation> = G extends ColorTypeLocation ? ColorThemeLocation<P> : G extends ColorTypeGrid ? ColorThemeGrid<P> : G extends ColorTypeDirect ? ColorThemeDirect<P> : never;
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declare namespace ColorTheme {
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export const enum Category {
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Atom = "Atom Property",
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export type Props = {
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[k: string]: any;
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};
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export type Factory<P extends PD.Params> = (ctx: ThemeDataContext, props: PD.Values<P>) => ColorTheme<P>;
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export const EmptyFactory: () =>
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export type Factory<P extends PD.Params, G extends ColorType> = (ctx: ThemeDataContext, props: PD.Values<P>) => ColorTheme<P, G>;
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export const EmptyFactory: () => ColorThemeLocation<{}>;
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export function areEqual(themeA: ColorTheme<any>, themeB: ColorTheme<any>): boolean;
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export interface Provider<P extends PD.Params = any, Id extends string = string> extends ThemeProvider<ColorTheme<P>, P, Id> {
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export function areEqual(themeA: ColorTheme<any, any>, themeB: ColorTheme<any, any>): boolean;
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export interface Provider<P extends PD.Params = any, Id extends string = string, G extends ColorType = ColorType> extends ThemeProvider<ColorTheme<P, G>, P, Id, G> {
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}
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export type Registry = ThemeRegistry<ColorTheme<any>>;
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export function createRegistry(): ThemeRegistry<
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export function createRegistry(): ThemeRegistry<ColorThemeLocation<{}> | ColorThemeDirect<{}> | ColorThemeGrid<{}>>;
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export const BuiltIn: {
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'atom-id': Provider<{
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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colors: import("../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors">>;
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}, "atom-id">;
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'carbohydrate-symbol': Provider<{}, "carbohydrate-symbol">;
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}, "atom-id", ColorType>;
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'carbohydrate-symbol': Provider<{}, "carbohydrate-symbol", ColorType>;
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'chain-id': Provider<{
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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maxCount: number;
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@@ -92,7 +101,7 @@ declare namespace ColorTheme {
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};
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}>, "colors">>;
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asymId: PD.Select<"label" | "auth">;
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}, "chain-id">;
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}, "chain-id", ColorType>;
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'element-index': Provider<{
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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maxCount: number;
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@@ -107,7 +116,7 @@ declare namespace ColorTheme {
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colors: import("../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors">>;
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}, "element-index">;
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}, "element-index", ColorType>;
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'element-symbol': Provider<{
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carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "element-symbol"> | PD.NamedParams<PD.Normalize<{
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@@ -278,7 +287,7 @@ declare namespace ColorTheme {
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LV: Color;
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UUH: Color;
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}>, "custom">>;
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}, "element-symbol">;
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}, "element-symbol", ColorType>;
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'entity-id': Provider<{
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@@ -293,7 +302,7 @@ declare namespace ColorTheme {
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colors: import("../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors">>;
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}, "entity-id">;
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}, "entity-id", ColorType>;
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'entity-source': Provider<{
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@@ -308,11 +317,11 @@ declare namespace ColorTheme {
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colors: import("../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors">>;
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|
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}, "entity-source">;
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}, "entity-source", ColorType>;
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hydrophobicity: Provider<{
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scale: PD.Select<"DGwif" | "DGwoct" | "Oct-IF">;
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|
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}, "hydrophobicity">;
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|
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}, "hydrophobicity", ColorType>;
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illustrative: Provider<{
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style: PD.Mapped<PD.NamedParams<PD.Normalize<{
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palette: PD.NamedParams<PD.Normalize<{
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|
@@ -364,7 +373,7 @@ declare namespace ColorTheme {
|
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}>, "custom">;
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}>, "molecule-type">>;
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|
carbonLightness: PD.Numeric;
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|
-
}, "illustrative">;
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|
+
}, "illustrative", ColorType>;
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'model-index': Provider<{
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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maxCount: number;
|
|
@@ -379,7 +388,7 @@ declare namespace ColorTheme {
|
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|
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
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|
};
|
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|
}>, "colors">>;
|
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|
-
}, "model-index">;
|
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|
+
}, "model-index", ColorType>;
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|
'molecule-type': Provider<{
|
|
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|
saturation: PD.Numeric;
|
|
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|
lightness: PD.Numeric;
|
|
@@ -392,11 +401,11 @@ declare namespace ColorTheme {
|
|
|
392
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|
PNA: Color;
|
|
393
402
|
saccharide: Color;
|
|
394
403
|
}>, "custom">>;
|
|
395
|
-
}, "molecule-type">;
|
|
404
|
+
}, "molecule-type", ColorType>;
|
|
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|
occupancy: Provider<{
|
|
397
406
|
domain: PD.Interval;
|
|
398
407
|
list: PD.ColorList;
|
|
399
|
-
}, "occupancy">;
|
|
408
|
+
}, "occupancy", ColorType>;
|
|
400
409
|
'operator-hkl': Provider<{
|
|
401
410
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
402
411
|
maxCount: number;
|
|
@@ -411,7 +420,7 @@ declare namespace ColorTheme {
|
|
|
411
420
|
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
412
421
|
};
|
|
413
422
|
}>, "colors">>;
|
|
414
|
-
}, "operator-hkl">;
|
|
423
|
+
}, "operator-hkl", ColorType>;
|
|
415
424
|
'operator-name': Provider<{
|
|
416
425
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
417
426
|
maxCount: number;
|
|
@@ -426,11 +435,11 @@ declare namespace ColorTheme {
|
|
|
426
435
|
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
427
436
|
};
|
|
428
437
|
}>, "colors">>;
|
|
429
|
-
}, "operator-name">;
|
|
438
|
+
}, "operator-name", ColorType>;
|
|
430
439
|
'partial-charge': Provider<{
|
|
431
440
|
domain: PD.Interval;
|
|
432
441
|
list: PD.ColorList;
|
|
433
|
-
}, "partial-charge">;
|
|
442
|
+
}, "partial-charge", ColorType>;
|
|
434
443
|
'polymer-id': Provider<{
|
|
435
444
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
436
445
|
maxCount: number;
|
|
@@ -445,7 +454,7 @@ declare namespace ColorTheme {
|
|
|
445
454
|
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
446
455
|
};
|
|
447
456
|
}>, "colors">>;
|
|
448
|
-
}, "polymer-id">;
|
|
457
|
+
}, "polymer-id", ColorType>;
|
|
449
458
|
'polymer-index': Provider<{
|
|
450
459
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
451
460
|
maxCount: number;
|
|
@@ -460,7 +469,7 @@ declare namespace ColorTheme {
|
|
|
460
469
|
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
461
470
|
};
|
|
462
471
|
}>, "colors">>;
|
|
463
|
-
}, "polymer-index">;
|
|
472
|
+
}, "polymer-index", ColorType>;
|
|
464
473
|
'residue-name': Provider<{
|
|
465
474
|
saturation: PD.Numeric;
|
|
466
475
|
lightness: PD.Numeric;
|
|
@@ -502,7 +511,7 @@ declare namespace ColorTheme {
|
|
|
502
511
|
CPN: Color;
|
|
503
512
|
TPN: Color;
|
|
504
513
|
}>, "custom">>;
|
|
505
|
-
}, "residue-name">;
|
|
514
|
+
}, "residue-name", ColorType>;
|
|
506
515
|
'secondary-structure': Provider<{
|
|
507
516
|
saturation: PD.Numeric;
|
|
508
517
|
lightness: PD.Numeric;
|
|
@@ -519,15 +528,15 @@ declare namespace ColorTheme {
|
|
|
519
528
|
rna: Color;
|
|
520
529
|
carbohydrate: Color;
|
|
521
530
|
}>, "custom">>;
|
|
522
|
-
}, "secondary-structure">;
|
|
531
|
+
}, "secondary-structure", ColorType>;
|
|
523
532
|
'sequence-id': Provider<{
|
|
524
533
|
list: PD.ColorList;
|
|
525
|
-
}, "sequence-id">;
|
|
526
|
-
'shape-group': Provider<{}, "shape-group">;
|
|
534
|
+
}, "sequence-id", ColorType>;
|
|
535
|
+
'shape-group': Provider<{}, "shape-group", ColorType>;
|
|
527
536
|
uncertainty: Provider<{
|
|
528
537
|
domain: PD.Interval;
|
|
529
538
|
list: PD.ColorList;
|
|
530
|
-
}, "uncertainty">;
|
|
539
|
+
}, "uncertainty", ColorType>;
|
|
531
540
|
'unit-index': Provider<{
|
|
532
541
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
533
542
|
maxCount: number;
|
|
@@ -542,13 +551,13 @@ declare namespace ColorTheme {
|
|
|
542
551
|
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
543
552
|
};
|
|
544
553
|
}>, "colors">>;
|
|
545
|
-
}, "unit-index">;
|
|
554
|
+
}, "unit-index", ColorType>;
|
|
546
555
|
uniform: Provider<{
|
|
547
556
|
value: PD.Color;
|
|
548
|
-
}, "uniform">;
|
|
557
|
+
}, "uniform", ColorType>;
|
|
549
558
|
'volume-value': Provider<{
|
|
550
559
|
colorList: PD.ColorList;
|
|
551
|
-
}, "volume-value">;
|
|
560
|
+
}, "volume-value", ColorType>;
|
|
552
561
|
};
|
|
553
562
|
type _BuiltIn = typeof BuiltIn;
|
|
554
563
|
export type BuiltIn = keyof _BuiltIn;
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*/
|
|
@@ -10,6 +10,7 @@ import { Volume } from '../mol-model/volume';
|
|
|
10
10
|
import { ParamDefinition as PD } from '../mol-util/param-definition';
|
|
11
11
|
import { Shape } from '../mol-model/shape';
|
|
12
12
|
import { CustomProperty } from '../mol-model-props/common/custom-property';
|
|
13
|
+
import { ColorType } from '../mol-geo/geometry/color-data';
|
|
13
14
|
export interface ThemeRegistryContext {
|
|
14
15
|
colorThemeRegistry: ColorTheme.Registry;
|
|
15
16
|
sizeThemeRegistry: SizeTheme.Registry;
|
|
@@ -22,7 +23,7 @@ export interface ThemeDataContext {
|
|
|
22
23
|
}
|
|
23
24
|
export { Theme };
|
|
24
25
|
interface Theme {
|
|
25
|
-
color: ColorTheme<any>;
|
|
26
|
+
color: ColorTheme<any, any>;
|
|
26
27
|
size: SizeTheme<any>;
|
|
27
28
|
}
|
|
28
29
|
declare namespace Theme {
|
|
@@ -35,7 +36,7 @@ declare namespace Theme {
|
|
|
35
36
|
export function releaseDependencies(theme: ThemeRegistryContext, data: ThemeDataContext, props: Props): void;
|
|
36
37
|
export {};
|
|
37
38
|
}
|
|
38
|
-
export interface ThemeProvider<T extends ColorTheme<P> | SizeTheme<P>, P extends PD.Params, Id extends string = string> {
|
|
39
|
+
export interface ThemeProvider<T extends ColorTheme<P, G> | SizeTheme<P>, P extends PD.Params, Id extends string = string, G extends ColorType = ColorType> {
|
|
39
40
|
readonly name: Id;
|
|
40
41
|
readonly label: string;
|
|
41
42
|
readonly category: string;
|
|
@@ -48,18 +49,18 @@ export interface ThemeProvider<T extends ColorTheme<P> | SizeTheme<P>, P extends
|
|
|
48
49
|
detach: (data: ThemeDataContext) => void;
|
|
49
50
|
};
|
|
50
51
|
}
|
|
51
|
-
export declare class ThemeRegistry<T extends ColorTheme<any> | SizeTheme<any>> {
|
|
52
|
+
export declare class ThemeRegistry<T extends ColorTheme<any, any> | SizeTheme<any>> {
|
|
52
53
|
private emptyProvider;
|
|
53
54
|
private _list;
|
|
54
55
|
private _map;
|
|
55
56
|
private _name;
|
|
56
57
|
get default(): {
|
|
57
58
|
name: string;
|
|
58
|
-
provider: ThemeProvider<T, any, string>;
|
|
59
|
+
provider: ThemeProvider<T, any, string, ColorType>;
|
|
59
60
|
};
|
|
60
61
|
get list(): {
|
|
61
62
|
name: string;
|
|
62
|
-
provider: ThemeProvider<T, any, string>;
|
|
63
|
+
provider: ThemeProvider<T, any, string, ColorType>;
|
|
63
64
|
}[];
|
|
64
65
|
get types(): [string, string, string][];
|
|
65
66
|
constructor(builtInThemes: {
|
|
@@ -74,7 +75,7 @@ export declare class ThemeRegistry<T extends ColorTheme<any> | SizeTheme<any>> {
|
|
|
74
75
|
create(name: string, ctx: ThemeDataContext, props?: {}): T;
|
|
75
76
|
getApplicableList(ctx: ThemeDataContext): {
|
|
76
77
|
name: string;
|
|
77
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