npm - molstar - Versions diffs - 3.5.0 → 3.7.0 - Mend

molstar 3.5.0 → 3.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (359) hide show

package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts CHANGED Viewed

@@ -33,6 +33,7 @@ export declare const InterUnitBondCylinderParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -82,6 +83,7 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts CHANGED Viewed

@@ -34,6 +34,7 @@ export declare const IntraUnitBondCylinderParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -83,6 +84,7 @@ export declare function IntraUnitBondCylinderVisual(materialId: number, structur
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts CHANGED Viewed

@@ -25,6 +25,7 @@ export declare const CarbohydrateLinkParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts CHANGED Viewed

@@ -15,6 +15,7 @@ export declare const CarbohydrateSymbolParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts CHANGED Viewed

@@ -25,6 +25,7 @@ export declare const CarbohydrateTerminalLinkParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts CHANGED Viewed

@@ -19,6 +19,7 @@ export declare const ElementSphereParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -53,6 +54,7 @@ export declare function ElementSphereVisual(materialId: number, structure: Struc
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts CHANGED Viewed

@@ -20,6 +20,7 @@ export declare const EllipsoidMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts CHANGED Viewed

@@ -26,6 +26,7 @@ export declare const GaussianSurfaceMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -65,6 +66,7 @@ export declare const StructureGaussianSurfaceMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -104,6 +106,7 @@ export declare function GaussianSurfaceVisual(materialId: number, structure: Str
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -142,6 +145,7 @@ export declare function StructureGaussianSurfaceVisual(materialId: number, struc
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts CHANGED Viewed

@@ -22,6 +22,7 @@ export declare const MolecularSurfaceMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts CHANGED Viewed

@@ -24,6 +24,7 @@ export declare const NucleotideBlockParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts CHANGED Viewed

@@ -27,6 +27,7 @@ export declare const NucleotideRingParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts CHANGED Viewed

@@ -19,6 +19,7 @@ export declare const OrientationEllipsoidMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts CHANGED Viewed

@@ -17,6 +17,7 @@ export declare const PolymerBackboneCylinderParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -50,6 +51,7 @@ export declare function PolymerBackboneCylinderVisual(materialId: number, struct
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts CHANGED Viewed

@@ -16,6 +16,7 @@ export declare const PolymerBackboneSphereParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -48,6 +49,7 @@ export declare function PolymerBackboneSphereVisual(materialId: number, structur
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts CHANGED Viewed

@@ -21,6 +21,7 @@ export declare const PolymerDirectionParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts CHANGED Viewed

@@ -24,6 +24,7 @@ export declare const PolymerGapParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts CHANGED Viewed

@@ -42,6 +42,7 @@ export declare const PolymerTraceParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts CHANGED Viewed

@@ -30,6 +30,7 @@ export declare const PolymerTubeParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-repr/util.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -31,6 +31,7 @@ export interface QualityProps {
     doubleSided: boolean;
     xrayShaded: boolean;
     alpha: number;
+    transparentBackfaces: 'off' | 'on' | 'opaque';
 }
 export declare const DefaultQualityThresholds: {
     lowestElementCount: number;

package/lib/commonjs/mol-repr/util.js CHANGED Viewed

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -169,7 +169,7 @@ function getQualityProps(props, data) {
     // max resolution based on volume (for 'auto' quality)
     resolution = Math.max(resolution, volume / 500000000);
     resolution = Math.min(resolution, 20);
-    if ((props.alpha !== undefined && props.alpha < 1) || !!props.xrayShaded) {
+    if (props.transparentBackfaces === 'off' && ((props.alpha !== undefined && props.alpha < 1) || !!props.xrayShaded)) {
         doubleSided = false;
     }
     return {

package/lib/commonjs/mol-repr/volume/isosurface.d.ts CHANGED Viewed

@@ -93,6 +93,7 @@ export declare function IsosurfaceVisual(materialId: number, volume: Volume, pro
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -166,6 +167,7 @@ export declare const IsosurfaceMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -328,6 +330,7 @@ export declare const IsosurfaceParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpAmplitude: PD.Numeric;
 };
 export declare type IsosurfaceParams = typeof IsosurfaceParams;
@@ -403,6 +406,7 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpAmplitude: PD.Numeric;
 };
 export declare type IsosurfaceRepresentation = VolumeRepresentation<IsosurfaceParams>;
@@ -479,5 +483,6 @@ export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvi
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpAmplitude: PD.Numeric;
 }, "isosurface">;

package/lib/commonjs/mol-repr/volume/registry.d.ts CHANGED Viewed

@@ -82,6 +82,7 @@ export declare namespace VolumeRepresentationRegistry {
             flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
+            transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
             bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
         }, "isosurface">;
         slice: import("./representation").VolumeRepresentationProvider<{

package/lib/commonjs/mol-theme/color.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -9,14 +9,21 @@ import { ColorType } from '../mol-geo/geometry/color-data';
 import { ParamDefinition as PD } from '../mol-util/param-definition';
 import { ThemeDataContext, ThemeRegistry, ThemeProvider } from './theme';
 import { ScaleLegend, TableLegend } from '../mol-util/legend';
-import { TextureFilter } from '../mol-gl/webgl/texture';
+import { Texture, TextureFilter } from '../mol-gl/webgl/texture';
+import { Vec3, Vec4 } from '../mol-math/linear-algebra';
 export declare type LocationColor = (location: Location, isSecondary: boolean) => Color;
+export interface ColorVolume {
+    colors: Texture;
+    dimension: Vec3;
+    transform: Vec4;
+}
 export { ColorTheme };
 interface ColorTheme<P extends PD.Params> {
     readonly factory: ColorTheme.Factory<P>;
     readonly granularity: ColorType;
     readonly color: LocationColor;
     readonly props: Readonly<PD.Values<P>>;
+    readonly grid?: ColorVolume;
     /**
      * if palette is defined, 24bit RGB color value normalized to interval [0, 1]
      * is used as index to the colors

package/lib/commonjs/mol-theme/color.js CHANGED Viewed

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/servers/model/server/query.js CHANGED Viewed

@@ -260,10 +260,8 @@ function resolveJobEntry(entry, structure, encoder) {
                     encoder.writeCategory(_model_server_result, entry);
                     encoder.writeCategory(_model_server_params, entry);
                     if (entry.queryDefinition.niceName === 'Ligand') {
-                        if (encoder instanceof encoder_1.MolEncoder) {
-                            encoder.setComponentAtomData(chem_comp_2.ComponentAtom.Provider.get(structure.models[0]));
-                        }
                         if (encoder instanceof encoder_1.MolEncoder || encoder instanceof encoder_2.Mol2Encoder) {
+                            encoder.setComponentAtomData(chem_comp_2.ComponentAtom.Provider.get(structure.models[0]));
                             encoder.setComponentBondData(chem_comp_1.ComponentBond.Provider.get(structure.models[0]));
                         }
                     }

package/lib/commonjs/servers/model/version.d.ts CHANGED Viewed

@@ -3,4 +3,4 @@
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */
-export declare const VERSION = "0.9.8";
+export declare const VERSION = "0.9.9";

package/lib/commonjs/servers/model/version.js CHANGED Viewed

@@ -6,4 +6,4 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.VERSION = void 0;
-exports.VERSION = '0.9.8';
+exports.VERSION = '0.9.9';

package/lib/examples/alpha-orbitals/index.js CHANGED Viewed

@@ -8,7 +8,7 @@ import { BehaviorSubject } from 'rxjs';
 import { debounceTime, skip } from 'rxjs/operators';
 import { CreateOrbitalDensityVolume, CreateOrbitalRepresentation3D, CreateOrbitalVolume, StaticBasisAndOrbitals } from '../../extensions/alpha-orbitals/transforms';
 import { canComputeGrid3dOnGPU } from '../../mol-gl/compute/grid3d';
-import { createPluginUI } from '../../mol-plugin-ui';
+import { createPluginUI } from '../../mol-plugin-ui/react18';
 import { DefaultPluginUISpec } from '../../mol-plugin-ui/spec';
 import { PluginCommands } from '../../mol-plugin/commands';
 import { PluginConfig } from '../../mol-plugin/config';
@@ -27,14 +27,14 @@ var AlphaOrbitalsExample = /** @class */ (function () {
         this.currentParams = __assign({}, this.state.value);
     }
     AlphaOrbitalsExample.prototype.init = function (target) {
-        var _a;
         return __awaiter(this, void 0, void 0, function () {
-            var defaultSpec, _b;
-            return __generator(this, function (_c) {
-                switch (_c.label) {
+            var defaultSpec, _a;
+            var _this = this;
+            return __generator(this, function (_b) {
+                switch (_b.label) {
                     case 0:
                         defaultSpec = DefaultPluginUISpec();
-                        _b = this;
+                        _a = this;
                         return [4 /*yield*/, createPluginUI(typeof target === 'string' ? document.getElementById(target) : target, __assign(__assign({}, defaultSpec), { layout: {
                                     initial: {
                                         isExpanded: false,
@@ -53,17 +53,22 @@ var AlphaOrbitalsExample = /** @class */ (function () {
                                     [PluginConfig.Viewport.ShowAnimation, false],
                                 ] }))];
                     case 1:
-                        _b.plugin = _c.sent();
+                        _a.plugin = _b.sent();
                         this.plugin.managers.interactivity.setProps({ granularity: 'element' });
-                        if (!canComputeGrid3dOnGPU((_a = this.plugin.canvas3d) === null || _a === void 0 ? void 0 : _a.webgl)) {
-                            PluginCommands.Toast.Show(this.plugin, {
-                                title: 'Error',
-                                message: "Browser/device does not support required WebGL extension (OES_texture_float)."
-                            });
-                            return [2 /*return*/];
-                        }
-                        this.load(__assign({ moleculeSdf: DemoMoleculeSDF }, DemoOrbitals));
-                        mountControls(this, document.getElementById('controls'));
+                        this.plugin.behaviors.canvas3d.initialized.subscribe(function (init) {
+                            var _a;
+                            if (!init)
+                                return;
+                            if (!canComputeGrid3dOnGPU((_a = _this.plugin.canvas3d) === null || _a === void 0 ? void 0 : _a.webgl)) {
+                                PluginCommands.Toast.Show(_this.plugin, {
+                                    title: 'Error',
+                                    message: "Browser/device does not support required WebGL extension (OES_texture_float)."
+                                });
+                                return;
+                            }
+                            _this.load(__assign({ moleculeSdf: DemoMoleculeSDF }, DemoOrbitals));
+                            mountControls(_this, document.getElementById('controls'));
+                        });
                         return [2 /*return*/];
                 }
             });

package/lib/examples/basic-wrapper/index.js CHANGED Viewed

@@ -8,7 +8,7 @@ import { PDBeStructureQualityReport } from '../../extensions/pdbe';
 import { EmptyLoci } from '../../mol-model/loci';
 import { StructureSelection } from '../../mol-model/structure';
 import { AnimateModelIndex } from '../../mol-plugin-state/animation/built-in/model-index';
-import { createPluginUI } from '../../mol-plugin-ui';
+import { createPluginUI } from '../../mol-plugin-ui/react18';
 import { DefaultPluginUISpec } from '../../mol-plugin-ui/spec';
 import { PluginCommands } from '../../mol-plugin/commands';
 import { Script } from '../../mol-script/script';

package/lib/examples/lighting/index.js CHANGED Viewed

@@ -4,7 +4,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { __assign, __awaiter, __generator } from "tslib";
-import { createPluginUI } from '../../mol-plugin-ui';
+import { createPluginUI } from '../../mol-plugin-ui/react18';
 import { DefaultPluginUISpec } from '../../mol-plugin-ui/spec';
 import { PluginCommands } from '../../mol-plugin/commands';
 import { Asset } from '../../mol-util/assets';

package/lib/examples/proteopedia-wrapper/index.js CHANGED Viewed

@@ -9,7 +9,7 @@ import { DefaultCanvas3DParams } from '../../mol-canvas3d/canvas3d';
 import { AnimateModelIndex } from '../../mol-plugin-state/animation/built-in/model-index';
 import { createStructureRepresentationParams } from '../../mol-plugin-state/helpers/structure-representation-params';
 import { StateTransforms } from '../../mol-plugin-state/transforms';
-import { createPluginUI } from '../../mol-plugin-ui';
+import { createPluginUI } from '../../mol-plugin-ui/react18';
 import { DefaultPluginUISpec } from '../../mol-plugin-ui/spec';
 import { CreateVolumeStreamingInfo, InitVolumeStreaming } from '../../mol-plugin/behavior/dynamic/volume-streaming/transformers';
 import { PluginCommands } from '../../mol-plugin/commands';

package/lib/extensions/anvil/behavior.d.ts CHANGED Viewed

@@ -42,6 +42,7 @@ declare const MembraneOrientation3D: StateTransformer<PluginStateObject.Molecule
     flatShaded: boolean;
     ignoreLight: boolean;
     xrayShaded: boolean;
+    transparentBackfaces: string;
     bumpFrequency: number;
     bumpAmplitude: number;
 }>>;

package/lib/extensions/anvil/representation.d.ts CHANGED Viewed

@@ -18,6 +18,7 @@ declare const BilayerPlanesParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -98,6 +99,7 @@ export declare const MembraneOrientationParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
 };
@@ -134,6 +136,7 @@ export declare function getMembraneOrientationParams(ctx: ThemeRegistryContext,
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
 };
@@ -170,6 +173,7 @@ export declare const MembraneOrientationRepresentationProvider: StructureReprese
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
 }, "membrane-orientation">;

package/lib/extensions/cellpack/representation.d.ts CHANGED Viewed

@@ -44,6 +44,7 @@ export declare const MBParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/extensions/dnatco/confal-pyramids/representation.d.ts CHANGED Viewed

@@ -17,6 +17,7 @@ export declare const ConfalPyramidsParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -46,6 +47,7 @@ export declare function getConfalPyramidsParams(ctx: ThemeRegistryContext, struc
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -76,6 +78,7 @@ export declare const ConfalPyramidsRepresentationProvider: StructureRepresentati
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts CHANGED Viewed

@@ -24,6 +24,7 @@ declare const AssemblySymmetry3D: StateTransformer<PluginStateObject.Molecule.St
     flatShaded: boolean;
     ignoreLight: boolean;
     xrayShaded: boolean;
+    transparentBackfaces: string;
     bumpFrequency: number;
     bumpAmplitude: number;
     alpha: number;

package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts CHANGED Viewed

@@ -16,6 +16,7 @@ export declare const AssemblySymmetryParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/extensions/rcsb/validation-report/representation.d.ts CHANGED Viewed

@@ -31,6 +31,7 @@ export declare const IntraUnitClashParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -73,6 +74,7 @@ export declare const InterUnitClashParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -116,6 +118,7 @@ export declare const ClashesParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -158,6 +161,7 @@ export declare function getClashesParams(ctx: ThemeRegistryContext, structure: S
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -201,6 +205,7 @@ export declare const ClashesRepresentationProvider: StructureRepresentationProvi
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    transparentBackfaces: PD.Select<string>;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-canvas3d/canvas3d.d.ts CHANGED Viewed

@@ -166,6 +166,7 @@ export declare const Canvas3DParams: {
             flipSided: any;
             flatShaded: any;
             xrayShaded: any;
+            transparentBackfaces: any;
             bumpFrequency: any;
             bumpAmplitude: any;
             quality: any;
@@ -319,6 +320,7 @@ export declare const DefaultCanvas3DParams: PD.Values<{
             flipSided: any;
             flatShaded: any;
             xrayShaded: any;
+            transparentBackfaces: any;
             bumpFrequency: any;
             bumpAmplitude: any;
             quality: any;

package/lib/mol-canvas3d/helper/camera-helper.d.ts CHANGED Viewed

@@ -22,6 +22,7 @@ export declare const CameraHelperParams: {
         flipSided: boolean;
         flatShaded: boolean;
         xrayShaded: boolean;
+        transparentBackfaces: string;
         bumpFrequency: number;
         bumpAmplitude: number;
         quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";

package/lib/mol-canvas3d/helper/handle-helper.d.ts CHANGED Viewed

@@ -24,6 +24,7 @@ export declare const HandleHelperParams: {
         flipSided: boolean;
         flatShaded: boolean;
         xrayShaded: boolean;
+        transparentBackfaces: string;
         bumpFrequency: number;
         bumpAmplitude: number;
         quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";