molstar 3.5.0 → 3.6.0

package/lib/commonjs/cli/cifschema/util/schema.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2017-2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/examples/alpha-orbitals/index.js

@@ -11,7 +11,7 @@ var rxjs_1 = require("rxjs");
 var operators_1 = require("rxjs/operators");
 var transforms_1 = require("../../extensions/alpha-orbitals/transforms");
 var grid3d_1 = require("../../mol-gl/compute/grid3d");
-var mol_plugin_ui_1 = require("../../mol-plugin-ui");
+var react18_1 = require("../../mol-plugin-ui/react18");
 var spec_1 = require("../../mol-plugin-ui/spec");
 var commands_1 = require("../../mol-plugin/commands");
 var config_1 = require("../../mol-plugin/config");
@@ -38,7 +38,7 @@ var AlphaOrbitalsExample = /** @class */ (function () {
                     case 0:
                         defaultSpec = (0, spec_1.DefaultPluginUISpec)();
                         _b = this;
-                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, defaultSpec), { layout: {
+                        return [4 /*yield*/, (0, react18_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, defaultSpec), { layout: {
                                     initial: {
                                         isExpanded: false,
                                         showControls: false

package/lib/commonjs/examples/basic-wrapper/index.js

@@ -10,7 +10,7 @@ var pdbe_1 = require("../../extensions/pdbe");
 var loci_1 = require("../../mol-model/loci");
 var structure_1 = require("../../mol-model/structure");
 var model_index_1 = require("../../mol-plugin-state/animation/built-in/model-index");
-var mol_plugin_ui_1 = require("../../mol-plugin-ui");
+var react18_1 = require("../../mol-plugin-ui/react18");
 var spec_1 = require("../../mol-plugin-ui/spec");
 var commands_1 = require("../../mol-plugin/commands");
 var script_1 = require("../../mol-script/script");
@@ -186,7 +186,7 @@ var BasicWrapper = /** @class */ (function () {
                 switch (_b.label) {
                     case 0:
                         _a = this;
-                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { layout: {
+                        return [4 /*yield*/, (0, react18_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { layout: {
                                     initial: {
                                         isExpanded: false,
                                         showControls: false

package/lib/commonjs/examples/lighting/index.js

@@ -6,7 +6,7 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
-var mol_plugin_ui_1 = require("../../mol-plugin-ui");
+var react18_1 = require("../../mol-plugin-ui/react18");
 var spec_1 = require("../../mol-plugin-ui/spec");
 var commands_1 = require("../../mol-plugin/commands");
 var assets_1 = require("../../mol-util/assets");
@@ -66,7 +66,7 @@ var LightingDemo = /** @class */ (function () {
                 switch (_b.label) {
                     case 0:
                         _a = this;
-                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { layout: {
+                        return [4 /*yield*/, (0, react18_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { layout: {
                                     initial: {
                                         isExpanded: false,
                                         showControls: false

package/lib/commonjs/examples/proteopedia-wrapper/index.js

@@ -11,7 +11,7 @@ var canvas3d_1 = require("../../mol-canvas3d/canvas3d");
 var model_index_1 = require("../../mol-plugin-state/animation/built-in/model-index");
 var structure_representation_params_1 = require("../../mol-plugin-state/helpers/structure-representation-params");
 var transforms_1 = require("../../mol-plugin-state/transforms");
-var mol_plugin_ui_1 = require("../../mol-plugin-ui");
+var react18_1 = require("../../mol-plugin-ui/react18");
 var spec_1 = require("../../mol-plugin-ui/spec");
 var transformers_1 = require("../../mol-plugin/behavior/dynamic/volume-streaming/transformers");
 var commands_1 = require("../../mol-plugin/commands");
@@ -241,7 +241,7 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
                 switch (_b.label) {
                     case 0:
                         _a = this;
-                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { animations: [
+                        return [4 /*yield*/, (0, react18_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { animations: [
                                     model_index_1.AnimateModelIndex
                                 ], layout: {
                                     initial: {

package/lib/commonjs/extensions/anvil/behavior.d.ts

@@ -42,6 +42,7 @@ declare const MembraneOrientation3D: StateTransformer<PluginStateObject.Molecule
     flatShaded: boolean;
     ignoreLight: boolean;
     xrayShaded: boolean;
+    allowTransparentBackfaces: boolean;
     bumpFrequency: number;
     bumpAmplitude: number;
 }>>;

package/lib/commonjs/extensions/anvil/representation.d.ts

@@ -18,6 +18,7 @@ declare const BilayerPlanesParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -98,6 +99,7 @@ export declare const MembraneOrientationParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
 };
@@ -134,6 +136,7 @@ export declare function getMembraneOrientationParams(ctx: ThemeRegistryContext,
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
 };
@@ -170,6 +173,7 @@ export declare const MembraneOrientationRepresentationProvider: StructureReprese
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
 }, "membrane-orientation">;

package/lib/commonjs/extensions/cellpack/representation.d.ts

@@ -44,6 +44,7 @@ export declare const MBParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts

@@ -17,6 +17,7 @@ export declare const ConfalPyramidsParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -46,6 +47,7 @@ export declare function getConfalPyramidsParams(ctx: ThemeRegistryContext, struc
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -76,6 +78,7 @@ export declare const ConfalPyramidsRepresentationProvider: StructureRepresentati
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts

@@ -24,6 +24,7 @@ declare const AssemblySymmetry3D: StateTransformer<PluginStateObject.Molecule.St
     flatShaded: boolean;
     ignoreLight: boolean;
     xrayShaded: boolean;
+    allowTransparentBackfaces: boolean;
     bumpFrequency: number;
     bumpAmplitude: number;
     alpha: number;

package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts

@@ -16,6 +16,7 @@ export declare const AssemblySymmetryParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts

@@ -31,6 +31,7 @@ export declare const IntraUnitClashParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -73,6 +74,7 @@ export declare const InterUnitClashParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -116,6 +118,7 @@ export declare const ClashesParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -158,6 +161,7 @@ export declare function getClashesParams(ctx: ThemeRegistryContext, structure: S
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -201,6 +205,7 @@ export declare const ClashesRepresentationProvider: StructureRepresentationProvi
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    allowTransparentBackfaces: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/commonjs/mol-canvas3d/canvas3d.d.ts

@@ -166,6 +166,7 @@ export declare const Canvas3DParams: {
             flipSided: any;
             flatShaded: any;
             xrayShaded: any;
+            allowTransparentBackfaces: any;
             bumpFrequency: any;
             bumpAmplitude: any;
             quality: any;
@@ -319,6 +320,7 @@ export declare const DefaultCanvas3DParams: PD.Values<{
             flipSided: any;
             flatShaded: any;
             xrayShaded: any;
+            allowTransparentBackfaces: any;
             bumpFrequency: any;
             bumpAmplitude: any;
             quality: any;

package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts

@@ -22,6 +22,7 @@ export declare const CameraHelperParams: {
         flipSided: boolean;
         flatShaded: boolean;
         xrayShaded: boolean;
+        allowTransparentBackfaces: boolean;
         bumpFrequency: number;
         bumpAmplitude: number;
         quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";

package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts

@@ -24,6 +24,7 @@ export declare const HandleHelperParams: {
         flipSided: boolean;
         flatShaded: boolean;
         xrayShaded: boolean;
+        allowTransparentBackfaces: boolean;
         bumpFrequency: number;
         bumpAmplitude: number;
         quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";

package/lib/commonjs/mol-canvas3d/helper/helper.d.ts

@@ -33,6 +33,7 @@ export declare const HelperParams: {
             flipSided: any;
             flatShaded: any;
             xrayShaded: any;
+            allowTransparentBackfaces: any;
             bumpFrequency: any;
             bumpAmplitude: any;
             quality: any;
@@ -65,6 +66,7 @@ export declare const DefaultHelperProps: PD.Values<{
             flipSided: any;
             flatShaded: any;
             xrayShaded: any;
+            allowTransparentBackfaces: any;
             bumpFrequency: any;
             bumpAmplitude: any;
             quality: any;

package/lib/commonjs/mol-canvas3d/passes/image.d.ts

@@ -60,6 +60,7 @@ export declare const ImageParams: {
             flipSided: any;
             flatShaded: any;
             xrayShaded: any;
+            allowTransparentBackfaces: any;
             bumpFrequency: any;
             bumpAmplitude: any;
             quality: any;

package/lib/commonjs/mol-data/db/column.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017-2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -28,6 +28,7 @@ declare namespace Column {
         export type Str = {
             '@type': 'str';
             T: string;
+            transform?: 'uppercase' | 'lowercase';
         } & Base<'str'>;
         export type Int = {
             '@type': 'int';
@@ -50,6 +51,7 @@ declare namespace Column {
         export type Aliased<T> = {
             '@type': 'aliased';
             T: T;
+            transform?: T extends string ? 'uppercase' | 'lowercase' : never;
         } & Base<T extends string ? 'str' : 'int'>;
         export type List<T extends number | string> = {
             '@type': 'list';
@@ -58,16 +60,21 @@ declare namespace Column {
             itemParse: (x: string) => T;
         } & Base<'list'>;
         export const str: Str;
+        export const ustr: Str;
+        export const lstr: Str;
         export const int: Int;
         export const coord: Coordinate;
         export const float: Float;
-        export function Str(defaultValue?: string): Str;
+        export function Str(options?: {
+            defaultValue?: string;
+            transform?: 'uppercase' | 'lowercase';
+        }): Str;
         export function Int(defaultValue?: number): Int;
         export function Float(defaultValue?: number): Float;
         export function Tensor(space: Tensors.Space, baseType?: Int | Float): Tensor;
         export function Vector(dim: number, baseType?: Int | Float): Tensor;
         export function Matrix(rows: number, cols: number, baseType?: Int | Float): Tensor;
-        export function Aliased<T>(t: Str | Int, defaultValue?: T): Aliased<T>;
+        export function Aliased<T>(t: Str | Int): Aliased<T>;
         export function List<T extends number | string>(separator: string, itemParse: (x: string) => T, defaultValue?: T[]): List<T>;
         export {};
     }

package/lib/commonjs/mol-data/db/column.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2017-2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -17,13 +17,12 @@ var Column;
     (function (Schema) {
         // T also serves as a default value for undefined columns
         Schema.str = { '@type': 'str', T: '', valueType: 'str' };
+        Schema.ustr = { '@type': 'str', T: '', valueType: 'str', transform: 'uppercase' };
+        Schema.lstr = { '@type': 'str', T: '', valueType: 'str', transform: 'lowercase' };
         Schema.int = { '@type': 'int', T: 0, valueType: 'int' };
         Schema.coord = { '@type': 'coord', T: 0, valueType: 'float' };
         Schema.float = { '@type': 'float', T: 0, valueType: 'float' };
-        function Str(defaultValue) {
-            if (defaultValue === void 0) { defaultValue = ''; }
-            return { '@type': 'str', T: defaultValue, valueType: 'str' };
-        }
+        function Str(options) { var _a; return { '@type': 'str', T: (_a = options === null || options === void 0 ? void 0 : options.defaultValue) !== null && _a !== void 0 ? _a : '', transform: options === null || options === void 0 ? void 0 : options.transform, valueType: 'str' }; }
         Schema.Str = Str;
         ;
         function Int(defaultValue) {
@@ -53,9 +52,7 @@ var Column;
             return Tensor(linear_algebra_1.Tensor.ColumnMajorMatrix(rows, cols, baseType['@type'] === 'int' ? Int32Array : Float64Array), baseType);
         }
         Schema.Matrix = Matrix;
-        function Aliased(t, defaultValue) {
-            if (typeof defaultValue !== 'undefined')
-                return tslib_1.__assign(tslib_1.__assign({}, t), { T: defaultValue });
+        function Aliased(t) {
             return t;
         }
         Schema.Aliased = Aliased;
@@ -268,8 +265,13 @@ function lambdaColumn(_a) {
 function arrayColumn(_a) {
     var array = _a.array, schema = _a.schema, valueKind = _a.valueKind;
     var rowCount = array.length;
+    var defaultValue = schema.T;
     var value = schema.valueType === 'str'
-        ? function (row) { var v = array[row]; return typeof v === 'string' ? v : '' + v; }
+        ? schema.transform === 'lowercase'
+            ? function (row) { var v = array[row]; return typeof v === 'string' ? v.toLowerCase() : "".concat(v !== null && v !== void 0 ? v : defaultValue).toLowerCase(); }
+            : schema.transform === 'uppercase'
+                ? function (row) { var v = array[row]; return typeof v === 'string' ? v.toUpperCase() : "".concat(v !== null && v !== void 0 ? v : defaultValue).toUpperCase(); }
+                : function (row) { var v = array[row]; return typeof v === 'string' ? v : "".concat(v !== null && v !== void 0 ? v : defaultValue); }
         : function (row) { return array[row]; };
     var isTyped = ColumnHelpers.isTypedArray(array);
     return {
@@ -280,15 +282,35 @@ function arrayColumn(_a) {
         value: value,
         valueKind: valueKind ? valueKind : function (row) { return 0 /* Present */; },
         toArray: schema.valueType === 'str'
-            ? function (params) {
-                var _a = ColumnHelpers.getArrayBounds(rowCount, params), start = _a.start, end = _a.end;
-                var ret = new (params && typeof params.array !== 'undefined' ? params.array : array.constructor)(end - start);
-                for (var i = 0, _i = end - start; i < _i; i++) {
-                    var v = array[start + i];
-                    ret[i] = typeof v === 'string' ? v : '' + v;
+            ? schema.transform === 'lowercase'
+                ? function (params) {
+                    var _a = ColumnHelpers.getArrayBounds(rowCount, params), start = _a.start, end = _a.end;
+                    var ret = new (params && typeof params.array !== 'undefined' ? params.array : array.constructor)(end - start);
+                    for (var i = 0, _i = end - start; i < _i; i++) {
+                        var v = array[start + i];
+                        ret[i] = typeof v === 'string' ? v.toLowerCase() : "".concat(v !== null && v !== void 0 ? v : defaultValue).toLowerCase();
+                    }
+                    return ret;
                 }
-                return ret;
-            }
+                : schema.transform === 'uppercase'
+                    ? function (params) {
+                        var _a = ColumnHelpers.getArrayBounds(rowCount, params), start = _a.start, end = _a.end;
+                        var ret = new (params && typeof params.array !== 'undefined' ? params.array : array.constructor)(end - start);
+                        for (var i = 0, _i = end - start; i < _i; i++) {
+                            var v = array[start + i];
+                            ret[i] = typeof v === 'string' ? v.toUpperCase() : "".concat(v !== null && v !== void 0 ? v : defaultValue).toUpperCase();
+                        }
+                        return ret;
+                    }
+                    : function (params) {
+                        var _a = ColumnHelpers.getArrayBounds(rowCount, params), start = _a.start, end = _a.end;
+                        var ret = new (params && typeof params.array !== 'undefined' ? params.array : array.constructor)(end - start);
+                        for (var i = 0, _i = end - start; i < _i; i++) {
+                            var v = array[start + i];
+                            ret[i] = typeof v === 'string' ? v : "".concat(v !== null && v !== void 0 ? v : defaultValue);
+                        }
+                        return ret;
+                    }
             : isTyped
                 ? function (params) { return ColumnHelpers.typedArrayWindow(array, params); }
                 : function (params) {

package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -43,13 +43,15 @@ export declare namespace Cylinders {
         doubleSided: PD.BooleanParam;
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
+        allowTransparentBackfaces: PD.BooleanParam;
         bumpFrequency: PD.Numeric;
         bumpAmplitude: PD.Numeric;
         alpha: PD.Numeric;
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
         material: PD.Group<PD.Normalize<{
             metalness: number;
-            roughness: number; /** Number of cylinders */
+            roughness: number;
+            /** Number of cylinders */
             bumpiness: number;
         }>>;
         clip: PD.Group<PD.Normalize<{

package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -110,7 +110,7 @@ var Cylinders;
     }
     Cylinders.transform = transform;
     //
-    Cylinders.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }), sizeAspectRatio: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 3, step: 0.01 }), doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
+    Cylinders.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }), sizeAspectRatio: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 3, step: 0.01 }), doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), allowTransparentBackfaces: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
     Cylinders.Utils = {
         Params: Cylinders.Params,
         createEmpty: createEmpty,

package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -62,6 +62,7 @@ export declare namespace Mesh {
         flatShaded: PD.BooleanParam;
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
+        allowTransparentBackfaces: PD.BooleanParam;
         bumpFrequency: PD.Numeric;
         bumpAmplitude: PD.Numeric;
         alpha: PD.Numeric;

package/lib/commonjs/mol-geo/geometry/mesh/mesh.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -554,7 +554,7 @@ var Mesh;
     }
     Mesh.smoothEdges = smoothEdges;
     //
-    Mesh.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
+    Mesh.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), allowTransparentBackfaces: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
     Mesh.Utils = {
         Params: Mesh.Params,
         createEmpty: createEmpty,

package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -34,6 +34,7 @@ export declare namespace Spheres {
         doubleSided: PD.BooleanParam;
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
+        allowTransparentBackfaces: PD.BooleanParam;
         bumpFrequency: PD.Numeric;
         bumpAmplitude: PD.Numeric;
         alpha: PD.Numeric;

package/lib/commonjs/mol-geo/geometry/spheres/spheres.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -91,7 +91,7 @@ var Spheres;
         mol_util_1.ValueCell.update(spheres.groupBuffer, groups);
         return spheres;
     }
-    Spheres.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }), doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
+    Spheres.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }), doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), allowTransparentBackfaces: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
     Spheres.Utils = {
         Params: Spheres.Params,
         createEmpty: createEmpty,

package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -45,6 +45,7 @@ export declare namespace TextureMesh {
         flatShaded: PD.BooleanParam;
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
+        allowTransparentBackfaces: PD.BooleanParam;
         bumpFrequency: PD.Numeric;
         bumpAmplitude: PD.Numeric;
         alpha: PD.Numeric;

package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -89,7 +89,7 @@ var TextureMesh;
         return create(0, 0, vt, gt, nt, bs, textureMesh);
     }
     TextureMesh.createEmpty = createEmpty;
-    TextureMesh.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
+    TextureMesh.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), allowTransparentBackfaces: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
     TextureMesh.Utils = {
         Params: TextureMesh.Params,
         createEmpty: createEmpty,

package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts

@@ -1,7 +1,7 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author Áron Samuel Kovács <aron.kovacs@mail.muni.cz>
  */
-export declare const wboit_write = "\n#if defined(dRenderVariant_colorWboit)\n    if (!uRenderWboit) {\n        if (preFogAlpha < 1.0) {\n            discard;\n        }\n    } else if (uRenderWboit) {\n        // the 'fragmentDepth > 0.99' check is to handle precision issues with packed depth\n        if (preFogAlpha != 1.0 && !interior && (fragmentDepth < getDepth(gl_FragCoord.xy / uDrawingBufferSize) || fragmentDepth > 0.99)) {\n            float alpha = gl_FragColor.a;\n            float wboitWeight = alpha * clamp(pow(1.0 - fragmentDepth, 2.0), 0.01, 1.0);\n            gl_FragColor = vec4(gl_FragColor.rgb * alpha * wboitWeight, alpha);\n            // extra alpha is to handle pre-multiplied alpha\n            #ifndef dGeometryType_directVolume\n                gl_FragData[1] = vec4((uTransparentBackground ? alpha : 1.0) * alpha * wboitWeight);\n            #else\n                gl_FragData[1] = vec4(alpha * alpha * wboitWeight);\n            #endif\n        } else {\n            discard;\n        }\n    }\n#endif\n";
+export declare const wboit_write = "\n#if defined(dRenderVariant_colorWboit)\n    if (!uRenderWboit) {\n        if (preFogAlpha < 1.0) {\n            discard;\n        }\n    } else if (uRenderWboit) {\n        // the 'fragmentDepth > 0.99' check is to handle precision issues with packed depth\n        if (preFogAlpha != 1.0 && (fragmentDepth < getDepth(gl_FragCoord.xy / uDrawingBufferSize) || fragmentDepth > 0.99)) {\n            float alpha = gl_FragColor.a;\n            float wboitWeight = alpha * clamp(pow(1.0 - fragmentDepth, 2.0), 0.01, 1.0);\n            gl_FragColor = vec4(gl_FragColor.rgb * alpha * wboitWeight, alpha);\n            // extra alpha is to handle pre-multiplied alpha\n            #ifndef dGeometryType_directVolume\n                gl_FragData[1] = vec4((uTransparentBackground ? alpha : 1.0) * alpha * wboitWeight);\n            #else\n                gl_FragData[1] = vec4(alpha * alpha * wboitWeight);\n            #endif\n        } else {\n            discard;\n        }\n    }\n#endif\n";

package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js

@@ -1,10 +1,10 @@
 "use strict";
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author Áron Samuel Kovács <aron.kovacs@mail.muni.cz>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.wboit_write = void 0;
-exports.wboit_write = "\n#if defined(dRenderVariant_colorWboit)\n    if (!uRenderWboit) {\n        if (preFogAlpha < 1.0) {\n            discard;\n        }\n    } else if (uRenderWboit) {\n        // the 'fragmentDepth > 0.99' check is to handle precision issues with packed depth\n        if (preFogAlpha != 1.0 && !interior && (fragmentDepth < getDepth(gl_FragCoord.xy / uDrawingBufferSize) || fragmentDepth > 0.99)) {\n            float alpha = gl_FragColor.a;\n            float wboitWeight = alpha * clamp(pow(1.0 - fragmentDepth, 2.0), 0.01, 1.0);\n            gl_FragColor = vec4(gl_FragColor.rgb * alpha * wboitWeight, alpha);\n            // extra alpha is to handle pre-multiplied alpha\n            #ifndef dGeometryType_directVolume\n                gl_FragData[1] = vec4((uTransparentBackground ? alpha : 1.0) * alpha * wboitWeight);\n            #else\n                gl_FragData[1] = vec4(alpha * alpha * wboitWeight);\n            #endif\n        } else {\n            discard;\n        }\n    }\n#endif\n";
+exports.wboit_write = "\n#if defined(dRenderVariant_colorWboit)\n    if (!uRenderWboit) {\n        if (preFogAlpha < 1.0) {\n            discard;\n        }\n    } else if (uRenderWboit) {\n        // the 'fragmentDepth > 0.99' check is to handle precision issues with packed depth\n        if (preFogAlpha != 1.0 && (fragmentDepth < getDepth(gl_FragCoord.xy / uDrawingBufferSize) || fragmentDepth > 0.99)) {\n            float alpha = gl_FragColor.a;\n            float wboitWeight = alpha * clamp(pow(1.0 - fragmentDepth, 2.0), 0.01, 1.0);\n            gl_FragColor = vec4(gl_FragColor.rgb * alpha * wboitWeight, alpha);\n            // extra alpha is to handle pre-multiplied alpha\n            #ifndef dGeometryType_directVolume\n                gl_FragData[1] = vec4((uTransparentBackground ? alpha : 1.0) * alpha * wboitWeight);\n            #else\n                gl_FragData[1] = vec4(alpha * alpha * wboitWeight);\n            #endif\n        } else {\n            discard;\n        }\n    }\n#endif\n";