molstar 3.5.0 → 3.6.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/index.html +1 -1
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +12 -14
- package/lib/apps/docking-viewer/index.js +1 -1
- package/lib/apps/viewer/app.js +1 -1
- package/lib/apps/viewer/index.html +1 -1
- package/lib/cli/chem-comp-dict/util.d.ts +20 -20
- package/lib/cli/cifschema/util/cif-dic.d.ts +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +7 -5
- package/lib/cli/cifschema/util/generate.d.ts +1 -1
- package/lib/cli/cifschema/util/generate.js +12 -3
- package/lib/cli/cifschema/util/schema.d.ts +3 -3
- package/lib/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js +2 -2
- package/lib/commonjs/apps/viewer/app.js +2 -2
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +20 -20
- package/lib/commonjs/cli/cifschema/util/cif-dic.d.ts +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +7 -5
- package/lib/commonjs/cli/cifschema/util/generate.d.ts +1 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +12 -3
- package/lib/commonjs/cli/cifschema/util/schema.d.ts +3 -3
- package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.js +2 -2
- package/lib/commonjs/examples/basic-wrapper/index.js +2 -2
- package/lib/commonjs/examples/lighting/index.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
- package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-data/db/column.d.ts +10 -3
- package/lib/commonjs/mol-data/db/column.js +39 -17
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/image.frag.js +2 -2
- package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/lines.frag.js +2 -2
- package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/points.frag.js +2 -2
- package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/text.frag.js +2 -2
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +2 -2
- package/lib/commonjs/mol-gl/webgl/buffer.js +12 -12
- package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/program.js +10 -4
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +8 -8
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +12 -11
- package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +12 -12
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +13 -12
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +30 -26
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +44 -39
- package/lib/commonjs/mol-io/reader/cif/schema.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema.js +22 -2
- package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
- package/lib/commonjs/mol-model/structure/model/model.js +14 -6
- package/lib/commonjs/mol-model/structure/model/properties/common.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types.d.ts +19 -17
- package/lib/commonjs/mol-model/structure/model/types.js +30 -31
- package/lib/commonjs/mol-model/structure/query/queries/generators.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +2 -4
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -3
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +3 -0
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/commonjs/mol-model-formats/structure/basic/entities.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +3 -3
- package/lib/commonjs/mol-model-formats/structure/common/component.js +46 -46
- package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.js +72 -7
- package/lib/commonjs/mol-model-formats/structure/pdb/secondary-structure.js +11 -11
- package/lib/commonjs/mol-model-formats/structure/pdb/to-cif.js +7 -2
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js +3 -2
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -0
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +6 -0
- package/lib/commonjs/mol-plugin-ui/react18.d.ts +11 -0
- package/lib/commonjs/mol-plugin-ui/react18.js +38 -0
- package/lib/commonjs/mol-plugin-ui/structure/focus.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/focus.js +2 -2
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/params.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/registry.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/util.d.ts +2 -1
- package/lib/commonjs/mol-repr/util.js +2 -2
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +5 -0
- package/lib/commonjs/mol-repr/volume/registry.d.ts +1 -0
- package/lib/examples/alpha-orbitals/index.js +1 -1
- package/lib/examples/basic-wrapper/index.js +1 -1
- package/lib/examples/lighting/index.js +1 -1
- package/lib/examples/proteopedia-wrapper/index.js +1 -1
- package/lib/extensions/anvil/behavior.d.ts +1 -0
- package/lib/extensions/anvil/representation.d.ts +4 -0
- package/lib/extensions/cellpack/representation.d.ts +1 -0
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
- package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/mol-canvas3d/canvas3d.d.ts +2 -0
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -0
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/mol-data/db/column.d.ts +10 -3
- package/lib/mol-data/db/column.js +39 -18
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
- package/lib/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +2 -1
- package/lib/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +2 -1
- package/lib/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/mol-gl/shader/image.frag.d.ts +2 -2
- package/lib/mol-gl/shader/image.frag.js +2 -2
- package/lib/mol-gl/shader/lines.frag.d.ts +2 -2
- package/lib/mol-gl/shader/lines.frag.js +2 -2
- package/lib/mol-gl/shader/points.frag.d.ts +2 -2
- package/lib/mol-gl/shader/points.frag.js +2 -2
- package/lib/mol-gl/shader/text.frag.d.ts +2 -2
- package/lib/mol-gl/shader/text.frag.js +2 -2
- package/lib/mol-gl/webgl/buffer.d.ts +2 -2
- package/lib/mol-gl/webgl/buffer.js +12 -12
- package/lib/mol-gl/webgl/program.d.ts +1 -1
- package/lib/mol-gl/webgl/program.js +10 -4
- package/lib/mol-io/reader/cif/schema/bird.d.ts +8 -8
- package/lib/mol-io/reader/cif/schema/bird.js +12 -11
- package/lib/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +12 -12
- package/lib/mol-io/reader/cif/schema/ccd.js +13 -12
- package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
- package/lib/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +30 -26
- package/lib/mol-io/reader/cif/schema/mmcif.js +44 -39
- package/lib/mol-io/reader/cif/schema.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema.js +22 -2
- package/lib/mol-io/writer/mol/encoder.js +1 -1
- package/lib/mol-model/structure/model/model.js +14 -6
- package/lib/mol-model/structure/model/properties/common.js +1 -1
- package/lib/mol-model/structure/model/types.d.ts +19 -17
- package/lib/mol-model/structure/model/types.js +30 -31
- package/lib/mol-model/structure/query/queries/generators.js +1 -1
- package/lib/mol-model/structure/structure/properties.d.ts +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +2 -4
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -3
- package/lib/mol-model/structure/structure/unit/rings.js +3 -0
- package/lib/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/mol-model-formats/structure/basic/entities.js +1 -1
- package/lib/mol-model-formats/structure/basic/schema.d.ts +2 -2
- package/lib/mol-model-formats/structure/common/component.d.ts +3 -3
- package/lib/mol-model-formats/structure/common/component.js +46 -46
- package/lib/mol-model-formats/structure/pdb/atom-site.d.ts +2 -2
- package/lib/mol-model-formats/structure/pdb/atom-site.js +72 -7
- package/lib/mol-model-formats/structure/pdb/secondary-structure.js +11 -11
- package/lib/mol-model-formats/structure/pdb/to-cif.js +7 -2
- package/lib/mol-model-formats/structure/property/bonds/chem_comp.js +1 -1
- package/lib/mol-model-formats/structure/property/bonds/struct_conn.js +1 -1
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/util.js +3 -2
- package/lib/mol-plugin/commands.d.ts +1 -0
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +3 -0
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/structure.d.ts +6 -6
- package/lib/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
- package/lib/mol-plugin-state/helpers/structure-selection-query.js +1 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
- package/lib/mol-plugin-ui/react18.d.ts +11 -0
- package/lib/mol-plugin-ui/react18.js +34 -0
- package/lib/mol-plugin-ui/structure/focus.d.ts +1 -1
- package/lib/mol-plugin-ui/structure/focus.js +2 -2
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/mol-repr/structure/complex-visual.d.ts +3 -0
- package/lib/mol-repr/structure/params.d.ts +4 -0
- package/lib/mol-repr/structure/registry.d.ts +10 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/mol-repr/structure/units-visual.d.ts +4 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/mol-repr/util.d.ts +2 -1
- package/lib/mol-repr/util.js +2 -2
- package/lib/mol-repr/volume/isosurface.d.ts +5 -0
- package/lib/mol-repr/volume/registry.d.ts +1 -0
- package/package.json +8 -6
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@@ -22,6 +22,7 @@ export declare namespace StructureRepresentationRegistry {
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -61,6 +62,7 @@ export declare namespace StructureRepresentationRegistry {
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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@@ -21,6 +21,7 @@ export declare const BackboneParams: {
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@@ -36,6 +36,7 @@ export declare const EllipsoidParams: {
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+
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@@ -139,6 +141,7 @@ export declare const EllipsoidRepresentationProvider: StructureRepresentationPro
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@@ -47,6 +47,7 @@ export declare const GaussianSurfaceParams: {
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+
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};
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export declare type GaussianSurfaceParams = typeof GaussianSurfaceParams;
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@@ -89,6 +90,7 @@ export declare function getGaussianSurfaceParams(ctx: ThemeRegistryContext, stru
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};
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export declare type GaussianSurfaceRepresentation = StructureRepresentation<GaussianSurfaceParams>;
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}, "gaussian-surface">;
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@@ -46,6 +46,7 @@ export declare const MolecularSurfaceParams: {
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+
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};
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export declare type MolecularSurfaceParams = typeof MolecularSurfaceParams;
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@@ -87,6 +88,7 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
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+
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};
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export declare type MolecularSurfaceRepresentation = StructureRepresentation<MolecularSurfaceParams>;
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@@ -129,5 +131,6 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
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}, "molecular-surface">;
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@@ -20,6 +20,7 @@ export declare const OrientationParams: {
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|
xrayShaded: PD.BooleanParam;
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+
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
@@ -52,6 +53,7 @@ export declare function getOrientationParams(ctx: ThemeRegistryContext, structur
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -85,6 +87,7 @@ export declare const OrientationRepresentationProvider: StructureRepresentationP
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flatShaded: PD.BooleanParam;
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@@ -20,6 +20,7 @@ export declare const PuttyParams: {
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -54,6 +55,7 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
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flatShaded: PD.BooleanParam;
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@@ -89,6 +91,7 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
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@@ -20,6 +20,7 @@ export declare const SpacefillParams: {
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doubleSided: PD.BooleanParam;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -54,6 +55,7 @@ export declare function getSpacefillParams(ctx: ThemeRegistryContext, structure:
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doubleSided: PD.BooleanParam;
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alpha: PD.Numeric;
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@@ -89,6 +91,7 @@ export declare const SpacefillRepresentationProvider: StructureRepresentationPro
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doubleSided: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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@@ -51,6 +51,7 @@ export declare const UnitsMeshParams: {
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flatShaded: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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allowTransparentBackfaces: PD.BooleanParam;
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bumpFrequency: PD.Numeric;
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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@@ -82,6 +83,7 @@ export declare const UnitsSpheresParams: {
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doubleSided: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
allowTransparentBackfaces: PD.BooleanParam;
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alpha: PD.Numeric;
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@@ -114,6 +116,7 @@ export declare const UnitsCylindersParams: {
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
allowTransparentBackfaces: PD.BooleanParam;
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alpha: PD.Numeric;
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@@ -275,6 +278,7 @@ export declare const UnitsTextureMeshParams: {
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flatShaded: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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@@ -33,6 +33,7 @@ export declare const InterUnitBondCylinderParams: {
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
allowTransparentBackfaces: PD.BooleanParam;
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bumpFrequency: PD.Numeric;
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
|
|
@@ -82,6 +83,7 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
allowTransparentBackfaces: PD.BooleanParam;
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bumpFrequency: PD.Numeric;
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
|
|
@@ -34,6 +34,7 @@ export declare const IntraUnitBondCylinderParams: {
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|
doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
allowTransparentBackfaces: PD.BooleanParam;
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bumpFrequency: PD.Numeric;
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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|
@@ -83,6 +84,7 @@ export declare function IntraUnitBondCylinderVisual(materialId: number, structur
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
allowTransparentBackfaces: PD.BooleanParam;
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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|
@@ -25,6 +25,7 @@ export declare const CarbohydrateLinkParams: {
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|
flatShaded: PD.BooleanParam;
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|
ignoreLight: PD.BooleanParam;
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|
xrayShaded: PD.BooleanParam;
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+
allowTransparentBackfaces: PD.BooleanParam;
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bumpFrequency: PD.Numeric;
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alpha: PD.Numeric;
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|
@@ -15,6 +15,7 @@ export declare const CarbohydrateSymbolParams: {
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15
15
|
flatShaded: PD.BooleanParam;
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16
16
|
ignoreLight: PD.BooleanParam;
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17
17
|
xrayShaded: PD.BooleanParam;
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|
18
|
+
allowTransparentBackfaces: PD.BooleanParam;
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18
19
|
bumpFrequency: PD.Numeric;
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20
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bumpAmplitude: PD.Numeric;
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20
21
|
alpha: PD.Numeric;
|
|
@@ -25,6 +25,7 @@ export declare const CarbohydrateTerminalLinkParams: {
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25
|
flatShaded: PD.BooleanParam;
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26
26
|
ignoreLight: PD.BooleanParam;
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27
|
xrayShaded: PD.BooleanParam;
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|
28
|
+
allowTransparentBackfaces: PD.BooleanParam;
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28
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|
bumpFrequency: PD.Numeric;
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29
30
|
bumpAmplitude: PD.Numeric;
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30
31
|
alpha: PD.Numeric;
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|
@@ -19,6 +19,7 @@ export declare const ElementSphereParams: {
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|
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19
19
|
doubleSided: PD.BooleanParam;
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|
20
20
|
ignoreLight: PD.BooleanParam;
|
|
21
21
|
xrayShaded: PD.BooleanParam;
|
|
22
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
22
23
|
bumpFrequency: PD.Numeric;
|
|
23
24
|
bumpAmplitude: PD.Numeric;
|
|
24
25
|
alpha: PD.Numeric;
|
|
@@ -53,6 +54,7 @@ export declare function ElementSphereVisual(materialId: number, structure: Struc
|
|
|
53
54
|
doubleSided: PD.BooleanParam;
|
|
54
55
|
ignoreLight: PD.BooleanParam;
|
|
55
56
|
xrayShaded: PD.BooleanParam;
|
|
57
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
56
58
|
bumpFrequency: PD.Numeric;
|
|
57
59
|
bumpAmplitude: PD.Numeric;
|
|
58
60
|
alpha: PD.Numeric;
|
|
@@ -20,6 +20,7 @@ export declare const EllipsoidMeshParams: {
|
|
|
20
20
|
flatShaded: PD.BooleanParam;
|
|
21
21
|
ignoreLight: PD.BooleanParam;
|
|
22
22
|
xrayShaded: PD.BooleanParam;
|
|
23
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
23
24
|
bumpFrequency: PD.Numeric;
|
|
24
25
|
bumpAmplitude: PD.Numeric;
|
|
25
26
|
alpha: PD.Numeric;
|
|
@@ -26,6 +26,7 @@ export declare const GaussianSurfaceMeshParams: {
|
|
|
26
26
|
flatShaded: PD.BooleanParam;
|
|
27
27
|
ignoreLight: PD.BooleanParam;
|
|
28
28
|
xrayShaded: PD.BooleanParam;
|
|
29
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
29
30
|
bumpFrequency: PD.Numeric;
|
|
30
31
|
bumpAmplitude: PD.Numeric;
|
|
31
32
|
alpha: PD.Numeric;
|
|
@@ -65,6 +66,7 @@ export declare const StructureGaussianSurfaceMeshParams: {
|
|
|
65
66
|
flatShaded: PD.BooleanParam;
|
|
66
67
|
ignoreLight: PD.BooleanParam;
|
|
67
68
|
xrayShaded: PD.BooleanParam;
|
|
69
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
68
70
|
bumpFrequency: PD.Numeric;
|
|
69
71
|
bumpAmplitude: PD.Numeric;
|
|
70
72
|
alpha: PD.Numeric;
|
|
@@ -104,6 +106,7 @@ export declare function GaussianSurfaceVisual(materialId: number, structure: Str
|
|
|
104
106
|
flatShaded: PD.BooleanParam;
|
|
105
107
|
ignoreLight: PD.BooleanParam;
|
|
106
108
|
xrayShaded: PD.BooleanParam;
|
|
109
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
107
110
|
bumpFrequency: PD.Numeric;
|
|
108
111
|
bumpAmplitude: PD.Numeric;
|
|
109
112
|
alpha: PD.Numeric;
|
|
@@ -142,6 +145,7 @@ export declare function StructureGaussianSurfaceVisual(materialId: number, struc
|
|
|
142
145
|
flatShaded: PD.BooleanParam;
|
|
143
146
|
ignoreLight: PD.BooleanParam;
|
|
144
147
|
xrayShaded: PD.BooleanParam;
|
|
148
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
145
149
|
bumpFrequency: PD.Numeric;
|
|
146
150
|
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|
|
147
151
|
alpha: PD.Numeric;
|
|
@@ -22,6 +22,7 @@ export declare const MolecularSurfaceMeshParams: {
|
|
|
22
22
|
flatShaded: PD.BooleanParam;
|
|
23
23
|
ignoreLight: PD.BooleanParam;
|
|
24
24
|
xrayShaded: PD.BooleanParam;
|
|
25
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
25
26
|
bumpFrequency: PD.Numeric;
|
|
26
27
|
bumpAmplitude: PD.Numeric;
|
|
27
28
|
alpha: PD.Numeric;
|
|
@@ -24,6 +24,7 @@ export declare const NucleotideBlockParams: {
|
|
|
24
24
|
flatShaded: PD.BooleanParam;
|
|
25
25
|
ignoreLight: PD.BooleanParam;
|
|
26
26
|
xrayShaded: PD.BooleanParam;
|
|
27
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
27
28
|
bumpFrequency: PD.Numeric;
|
|
28
29
|
bumpAmplitude: PD.Numeric;
|
|
29
30
|
alpha: PD.Numeric;
|
|
@@ -27,6 +27,7 @@ export declare const NucleotideRingParams: {
|
|
|
27
27
|
flatShaded: PD.BooleanParam;
|
|
28
28
|
ignoreLight: PD.BooleanParam;
|
|
29
29
|
xrayShaded: PD.BooleanParam;
|
|
30
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
30
31
|
bumpFrequency: PD.Numeric;
|
|
31
32
|
bumpAmplitude: PD.Numeric;
|
|
32
33
|
alpha: PD.Numeric;
|
|
@@ -19,6 +19,7 @@ export declare const OrientationEllipsoidMeshParams: {
|
|
|
19
19
|
flatShaded: PD.BooleanParam;
|
|
20
20
|
ignoreLight: PD.BooleanParam;
|
|
21
21
|
xrayShaded: PD.BooleanParam;
|
|
22
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
22
23
|
bumpFrequency: PD.Numeric;
|
|
23
24
|
bumpAmplitude: PD.Numeric;
|
|
24
25
|
alpha: PD.Numeric;
|
|
@@ -17,6 +17,7 @@ export declare const PolymerBackboneCylinderParams: {
|
|
|
17
17
|
doubleSided: PD.BooleanParam;
|
|
18
18
|
ignoreLight: PD.BooleanParam;
|
|
19
19
|
xrayShaded: PD.BooleanParam;
|
|
20
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
20
21
|
bumpFrequency: PD.Numeric;
|
|
21
22
|
bumpAmplitude: PD.Numeric;
|
|
22
23
|
alpha: PD.Numeric;
|
|
@@ -50,6 +51,7 @@ export declare function PolymerBackboneCylinderVisual(materialId: number, struct
|
|
|
50
51
|
doubleSided: PD.BooleanParam;
|
|
51
52
|
ignoreLight: PD.BooleanParam;
|
|
52
53
|
xrayShaded: PD.BooleanParam;
|
|
54
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
53
55
|
bumpFrequency: PD.Numeric;
|
|
54
56
|
bumpAmplitude: PD.Numeric;
|
|
55
57
|
alpha: PD.Numeric;
|
|
@@ -16,6 +16,7 @@ export declare const PolymerBackboneSphereParams: {
|
|
|
16
16
|
doubleSided: PD.BooleanParam;
|
|
17
17
|
ignoreLight: PD.BooleanParam;
|
|
18
18
|
xrayShaded: PD.BooleanParam;
|
|
19
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
19
20
|
bumpFrequency: PD.Numeric;
|
|
20
21
|
bumpAmplitude: PD.Numeric;
|
|
21
22
|
alpha: PD.Numeric;
|
|
@@ -48,6 +49,7 @@ export declare function PolymerBackboneSphereVisual(materialId: number, structur
|
|
|
48
49
|
doubleSided: PD.BooleanParam;
|
|
49
50
|
ignoreLight: PD.BooleanParam;
|
|
50
51
|
xrayShaded: PD.BooleanParam;
|
|
52
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
51
53
|
bumpFrequency: PD.Numeric;
|
|
52
54
|
bumpAmplitude: PD.Numeric;
|
|
53
55
|
alpha: PD.Numeric;
|
|
@@ -21,6 +21,7 @@ export declare const PolymerDirectionParams: {
|
|
|
21
21
|
flatShaded: PD.BooleanParam;
|
|
22
22
|
ignoreLight: PD.BooleanParam;
|
|
23
23
|
xrayShaded: PD.BooleanParam;
|
|
24
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
24
25
|
bumpFrequency: PD.Numeric;
|
|
25
26
|
bumpAmplitude: PD.Numeric;
|
|
26
27
|
alpha: PD.Numeric;
|
|
@@ -24,6 +24,7 @@ export declare const PolymerGapParams: {
|
|
|
24
24
|
flatShaded: PD.BooleanParam;
|
|
25
25
|
ignoreLight: PD.BooleanParam;
|
|
26
26
|
xrayShaded: PD.BooleanParam;
|
|
27
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
27
28
|
bumpFrequency: PD.Numeric;
|
|
28
29
|
bumpAmplitude: PD.Numeric;
|
|
29
30
|
alpha: PD.Numeric;
|
|
@@ -42,6 +42,7 @@ export declare const PolymerTraceParams: {
|
|
|
42
42
|
flatShaded: PD.BooleanParam;
|
|
43
43
|
ignoreLight: PD.BooleanParam;
|
|
44
44
|
xrayShaded: PD.BooleanParam;
|
|
45
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
45
46
|
bumpFrequency: PD.Numeric;
|
|
46
47
|
bumpAmplitude: PD.Numeric;
|
|
47
48
|
alpha: PD.Numeric;
|
|
@@ -30,6 +30,7 @@ export declare const PolymerTubeParams: {
|
|
|
30
30
|
flatShaded: PD.BooleanParam;
|
|
31
31
|
ignoreLight: PD.BooleanParam;
|
|
32
32
|
xrayShaded: PD.BooleanParam;
|
|
33
|
+
allowTransparentBackfaces: PD.BooleanParam;
|
|
33
34
|
bumpFrequency: PD.Numeric;
|
|
34
35
|
bumpAmplitude: PD.Numeric;
|
|
35
36
|
alpha: PD.Numeric;
|
package/lib/mol-repr/util.d.ts
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*/
|
|
@@ -31,6 +31,7 @@ export interface QualityProps {
|
|
|
31
31
|
doubleSided: boolean;
|
|
32
32
|
xrayShaded: boolean;
|
|
33
33
|
alpha: number;
|
|
34
|
+
allowTransparentBackfaces: boolean;
|
|
34
35
|
}
|
|
35
36
|
export declare const DefaultQualityThresholds: {
|
|
36
37
|
lowestElementCount: number;
|
package/lib/mol-repr/util.js
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*/
|
|
@@ -165,7 +165,7 @@ export function getQualityProps(props, data) {
|
|
|
165
165
|
// max resolution based on volume (for 'auto' quality)
|
|
166
166
|
resolution = Math.max(resolution, volume / 500000000);
|
|
167
167
|
resolution = Math.min(resolution, 20);
|
|
168
|
-
if ((props.alpha !== undefined && props.alpha < 1) || !!props.xrayShaded) {
|
|
168
|
+
if (!props.allowTransparentBackfaces && ((props.alpha !== undefined && props.alpha < 1) || !!props.xrayShaded)) {
|
|
169
169
|
doubleSided = false;
|
|
170
170
|
}
|
|
171
171
|
return {
|