molstar 3.31.2 → 3.31.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +202 -202
- package/build/viewer/embedded.html +52 -52
- package/build/viewer/index.html +115 -115
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/embedded.html +52 -52
- package/lib/apps/viewer/index.html +115 -115
- package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +4 -2
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.js +1 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.vert.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/cylinders.vert.js +2 -2
- package/lib/commonjs/mol-gl/shader/spheres.vert.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/spheres.vert.js +2 -2
- package/lib/commonjs/mol-math/linear-algebra/matrix/principal-axes.js +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -1
- package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
- package/lib/commonjs/mol-util/data-source.js +2 -1
- package/lib/examples/alpha-orbitals/index.html +72 -72
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/meshes/mesh-extension.d.ts +4 -2
- package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +2 -0
- package/lib/mol-canvas3d/canvas3d.js +1 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/mol-gl/shader/cylinders.vert.d.ts +2 -2
- package/lib/mol-gl/shader/cylinders.vert.js +2 -2
- package/lib/mol-gl/shader/spheres.vert.d.ts +2 -2
- package/lib/mol-gl/shader/spheres.vert.js +2 -2
- package/lib/mol-math/linear-algebra/matrix/principal-axes.js +1 -1
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +137 -137
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -1
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -1
- package/lib/mol-script/language/builder.d.ts +1 -0
- package/lib/mol-util/data-source.js +2 -1
- package/package.json +177 -177
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<head>
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<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
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<title>Mol* Lighting Demo</title>
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#controls > input, #controls > select {
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display: block;
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}
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</style>
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<link rel="stylesheet" type="text/css" href="molstar.css" />
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<script type="text/javascript" src="./index.js"></script>
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</head>
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<body>
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<div id='controls'></div>
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<div id="app"></div>
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<script>
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LightingDemo.init('app').then(() => {
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LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3);
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});
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addHeader('Example PDB IDs');
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addControl('4KTC', () => LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3));
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addControl('5FJ5', () => LightingDemo.load({ url: 'https://models.rcsb.org/5FJ5.bcif', assemblyId: '1' }, 8, 1.8));
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addControl('1UPN', () => LightingDemo.load({ url: 'https://models.rcsb.org/1UPN.bcif', assemblyId: '1' }, 7, 1.6));
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addControl('1RB8', () => LightingDemo.load({ url: 'https://models.rcsb.org/1RB8.bcif', assemblyId: '1' }, 6, 1.3));
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addSeparator()
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addHeader('Lighting Presets');
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addControl('Illustrative', () => LightingDemo.setPreset('illustrative'));
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addControl('Standard', () => LightingDemo.setPreset('standard'));
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addControl('Ambient Occlusion', () => LightingDemo.setPreset('occlusion'));
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////////////////////////////////////////////////////////
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function addControl(label, action) {
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function addSeparator() {
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function addHeader(header) {
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</script>
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<!-- __MOLSTAR_ANALYTICS__ -->
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</body>
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<!DOCTYPE html>
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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
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<title>Mol* Lighting Demo</title>
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<style>
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* {
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margin: 0;
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padding: 0;
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box-sizing: border-box;
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}
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#app {
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position: absolute;
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width: 100%;
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height: 100%;
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}
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#controls {
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position: absolute;
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width: 150px;
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bottom: 100px;
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right: 50px;
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z-index: 10;
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font-family: sans-serif;
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font-size: smaller;
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}
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#controls > button {
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display: block;
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margin: 5px 0px;
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}
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#controls > input, #controls > select {
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display: block;
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}
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</style>
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<link rel="stylesheet" type="text/css" href="molstar.css" />
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<script type="text/javascript" src="./index.js"></script>
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</head>
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<body>
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<div id='controls'></div>
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<div id="app"></div>
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<script>
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LightingDemo.init('app').then(() => {
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LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3);
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});
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addHeader('Example PDB IDs');
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addControl('4KTC', () => LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3));
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addControl('5FJ5', () => LightingDemo.load({ url: 'https://models.rcsb.org/5FJ5.bcif', assemblyId: '1' }, 8, 1.8));
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addControl('1UPN', () => LightingDemo.load({ url: 'https://models.rcsb.org/1UPN.bcif', assemblyId: '1' }, 7, 1.6));
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addControl('1RB8', () => LightingDemo.load({ url: 'https://models.rcsb.org/1RB8.bcif', assemblyId: '1' }, 6, 1.3));
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addSeparator()
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addHeader('Lighting Presets');
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addControl('Illustrative', () => LightingDemo.setPreset('illustrative'));
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addControl('Standard', () => LightingDemo.setPreset('standard'));
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addControl('Ambient Occlusion', () => LightingDemo.setPreset('occlusion'));
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////////////////////////////////////////////////////////
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function $(id) { return document.getElementById(id); }
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function addControl(label, action) {
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var btn = document.createElement('button');
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btn.onclick = action;
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btn.innerText = label;
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$('controls').appendChild(btn);
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}
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function addSeparator() {
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$('controls').appendChild(hr);
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}
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function addHeader(header) {
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var h = document.createElement('h3');
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h.innerText = header;
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$('controls').appendChild(h);
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}
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</script>
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<!-- __MOLSTAR_ANALYTICS__ -->
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</body>
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<title>Mol* Proteopedia Wrapper</title>
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margin: 0;
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}
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#app {
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position: absolute;
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left: 160px;
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width: 600px;
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height: 600px;
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border: 1px solid #ccc;
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}
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top: 10px;
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left: 10px;
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}
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<h3>Source</h3>
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<input type='text' id='url' placeholder='url' style='width: 400px' />
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<input type='text' id='assemblyId' placeholder='assembly id' />
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<select id='format'>
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<option value='cif' selected>CIF</option>
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<option value='pdb'>PDB</option>
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</select>
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<input type='checkbox' id='isBinary' style="display: inline-block; width: auto" /> <label for="isBinary"> Binary</label><br />
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// it might be a good idea to define these colors in a separate script file
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var CustomColors = [0x00ff00, 0x0000ff];
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// create an instance of the plugin
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var PluginWrapper = new MolStarProteopediaWrapper();
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console.log('Wrapper version', MolStarProteopediaWrapper.VERSION_MAJOR, MolStarProteopediaWrapper.VERSION_MINOR);
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function $(id) { return document.getElementById(id); }
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|
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var pdbId = '1cbs', assemblyId= 'preferred', isBinary = true;
|
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var url = 'https://www.ebi.ac.uk/pdbe/entry-files/download/' + pdbId + '.bcif'
|
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var format = 'cif';
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$('url').value = url;
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$('url').onchange = function (e) { url = e.target.value; }
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$('assemblyId').value = assemblyId;
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$('assemblyId').onchange = function (e) { assemblyId = e.target.value; }
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$('format').value = format;
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$('format').onchange = function (e) { format = e.target.value; }
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$('isBinary').checked = isBinary;
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$('isBinary').onchange = function (e) { isBinary = !!e.target.checked; };
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90
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function loadAndSnapshot(params) {
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PluginWrapper.load(params).then(() => {
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setTimeout(() => snapshot = PluginWrapper.plugin.state.getSnapshot({ canvas3d: false /* do not save spinning state */ }), 500);
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});
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}
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var representationStyle = {
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// sequence: { coloring: 'proteopedia-custom' }, // or just { }
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hetGroups: { kind: 'ball-and-stick' }, // or 'spacefill
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water: { hide: true },
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snfg3d: { hide: false }
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};
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PluginWrapper.init('app' /** or document.getElementById('app') */, {
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customColorList: CustomColors
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}).then(() => {
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PluginWrapper.setBackground(0xffffff);
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loadAndSnapshot({ url: url, format: format, isBinary: isBinary, assemblyId: assemblyId, representationStyle: representationStyle });
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PluginWrapper.toggleSpin();
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});
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PluginWrapper.events.modelInfo.subscribe(function (info) {
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console.log('Model Info', info);
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listHetGroups(info);
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});
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addControl('Load Asym Unit', () => loadAndSnapshot({ url: url, format: format, isBinary }));
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addControl('Load Assembly', () => loadAndSnapshot({ url: url, format: format, isBinary, assemblyId: assemblyId }));
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addSeparator();
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addHeader('Representation');
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addControl('Custom Chain Colors', () => PluginWrapper.updateStyle({ sequence: { coloring: 'proteopedia-custom' } }, true));
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addControl('Default Chain Colors', () => PluginWrapper.updateStyle({ sequence: { } }, true));
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addControl('HET Spacefill', () => PluginWrapper.updateStyle({ hetGroups: { kind: 'spacefill' } }, true));
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addControl('HET Ball-and-stick', () => PluginWrapper.updateStyle({ hetGroups: { kind: 'ball-and-stick' } }, true));
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addControl('Hide 3DSNFG', () => PluginWrapper.updateStyle({ snfg3d: { hide: true } }, true));
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addControl('Show 3DSNFG', () => PluginWrapper.updateStyle({ snfg3d: { hide: false } }, true));
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addControl('Hide Water', () => PluginWrapper.updateStyle({ water: { hide: true } }, true));
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addControl('Show Water', () => PluginWrapper.updateStyle({ water: { hide: false } }, true));
|
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|
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136
|
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addSeparator();
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137
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138
|
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addHeader('Camera');
|
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139
|
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addControl('Reset Position', () => PluginWrapper.camera.resetPosition());
|
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|
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addControl('Toggle Spin', () => PluginWrapper.camera.toggleSpin());
|
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|
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// Same as "wheel icon" and Viewport options
|
|
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|
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// addControl('Clip', () => PluginWrapper.viewport.setSettings({ clip: [33, 66] }));
|
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|
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// addControl('Reset Clip', () => PluginWrapper.viewport.setSettings({ clip: [1, 100] }));
|
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144
|
-
|
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145
|
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addSeparator();
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|
-
|
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147
|
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addHeader('Animation');
|
|
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|
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149
|
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// adjust this number to make the animation faster or slower
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|
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// requires to "restart" the animation if changed
|
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|
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PluginWrapper.animate.modelIndex.targetFps = 30;
|
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|
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|
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addControl('Play To End', () => PluginWrapper.animate.modelIndex.onceForward());
|
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|
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addControl('Play To Start', () => PluginWrapper.animate.modelIndex.onceBackward());
|
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155
|
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addControl('Play Palindrome', () => PluginWrapper.animate.modelIndex.palindrome());
|
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156
|
-
addControl('Play Loop', () => PluginWrapper.animate.modelIndex.loop());
|
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157
|
-
addControl('Stop', () => PluginWrapper.animate.modelIndex.stop());
|
|
158
|
-
|
|
159
|
-
addSeparator();
|
|
160
|
-
addHeader('Misc');
|
|
161
|
-
|
|
162
|
-
addControl('Apply Evo Cons Style', () => PluginWrapper.coloring.evolutionaryConservation());
|
|
163
|
-
addControl('Apply Evo Cons Colors', () => PluginWrapper.coloring.evolutionaryConservation({ sequence: true, het: false, keepStyle: true }));
|
|
164
|
-
addControl('Default Visuals', () => PluginWrapper.updateStyle());
|
|
165
|
-
|
|
166
|
-
addSeparator();
|
|
167
|
-
addHeader('HET Groups');
|
|
168
|
-
|
|
169
|
-
addControl('Reset', () => PluginWrapper.hetGroups.reset());
|
|
170
|
-
addHetGroupsContainer();
|
|
171
|
-
|
|
172
|
-
addSeparator();
|
|
173
|
-
addHeader('Exp. Data');
|
|
174
|
-
addControl('Init', () => PluginWrapper.experimentalData.init($('volume-streaming-wrapper')));
|
|
175
|
-
addControl('Remove', () => PluginWrapper.experimentalData.remove());
|
|
176
|
-
|
|
177
|
-
addSeparator();
|
|
178
|
-
addHeader('State');
|
|
179
|
-
|
|
180
|
-
var snapshot;
|
|
181
|
-
addControl('Set Snapshot', () => {
|
|
182
|
-
// const options = { data: true, behavior: false, animation: false, interactivity: false, canvas3d: false, camera: false, cameraTransition: false };
|
|
183
|
-
snapshot = PluginWrapper.plugin.state.getSnapshot(/** options */);
|
|
184
|
-
// console.log(JSON.stringify(snapshot, null, 2));
|
|
185
|
-
});
|
|
186
|
-
addControl('Restore Snapshot', () => {
|
|
187
|
-
if (!snapshot) return;
|
|
188
|
-
PluginWrapper.snapshot.set(snapshot);
|
|
189
|
-
});
|
|
190
|
-
addControl('Download State', () => {
|
|
191
|
-
PluginWrapper.snapshot.download('molj');
|
|
192
|
-
});
|
|
193
|
-
addControl('Download Session', () => {
|
|
194
|
-
PluginWrapper.snapshot.download('molx');
|
|
195
|
-
});
|
|
196
|
-
|
|
197
|
-
////////////////////////////////////////////////////////
|
|
198
|
-
|
|
199
|
-
function addHetGroupsContainer() {
|
|
200
|
-
var div = document.createElement('div');
|
|
201
|
-
div.id = 'het-groups';
|
|
202
|
-
$('controls').appendChild(div);
|
|
203
|
-
}
|
|
204
|
-
|
|
205
|
-
function addControl(label, action) {
|
|
206
|
-
var btn = document.createElement('button');
|
|
207
|
-
btn.onclick = action;
|
|
208
|
-
btn.innerText = label;
|
|
209
|
-
$('controls').appendChild(btn);
|
|
210
|
-
}
|
|
211
|
-
|
|
212
|
-
function addSeparator() {
|
|
213
|
-
var hr = document.createElement('hr');
|
|
214
|
-
$('controls').appendChild(hr);
|
|
215
|
-
}
|
|
216
|
-
|
|
217
|
-
function addHeader(header) {
|
|
218
|
-
var h = document.createElement('h3');
|
|
219
|
-
h.innerText = header;
|
|
220
|
-
$('controls').appendChild(h);
|
|
221
|
-
}
|
|
222
|
-
|
|
223
|
-
function listHetGroups(info) {
|
|
224
|
-
var div = $('het-groups');
|
|
225
|
-
div.innerHTML = '';
|
|
226
|
-
info.hetResidues.forEach(function (r) {
|
|
227
|
-
var l = document.createElement('button');
|
|
228
|
-
l.innerText = r.name;
|
|
229
|
-
l.onclick = function () {
|
|
230
|
-
PluginWrapper.hetGroups.focusFirst(r.name, { doNotLabelWaters: true });
|
|
231
|
-
};
|
|
232
|
-
div.appendChild(l);
|
|
233
|
-
});
|
|
234
|
-
}
|
|
235
|
-
</script>
|
|
236
|
-
</body>
|
|
1
|
+
<!DOCTYPE html>
|
|
2
|
+
<html lang="en">
|
|
3
|
+
<head>
|
|
4
|
+
<meta charset="utf-8" />
|
|
5
|
+
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
|
|
6
|
+
<title>Mol* Proteopedia Wrapper</title>
|
|
7
|
+
<style>
|
|
8
|
+
* {
|
|
9
|
+
margin: 0;
|
|
10
|
+
padding: 0;
|
|
11
|
+
box-sizing: border-box;
|
|
12
|
+
}
|
|
13
|
+
#app {
|
|
14
|
+
position: absolute;
|
|
15
|
+
left: 160px;
|
|
16
|
+
top: 100px;
|
|
17
|
+
width: 600px;
|
|
18
|
+
height: 600px;
|
|
19
|
+
border: 1px solid #ccc;
|
|
20
|
+
}
|
|
21
|
+
|
|
22
|
+
#controls {
|
|
23
|
+
position: absolute;
|
|
24
|
+
width: 130px;
|
|
25
|
+
top: 10px;
|
|
26
|
+
left: 10px;
|
|
27
|
+
}
|
|
28
|
+
|
|
29
|
+
#controls > button {
|
|
30
|
+
display: block;
|
|
31
|
+
width: 100%;
|
|
32
|
+
text-align: left;
|
|
33
|
+
}
|
|
34
|
+
|
|
35
|
+
#controls > hr {
|
|
36
|
+
margin: 5px 0;
|
|
37
|
+
}
|
|
38
|
+
|
|
39
|
+
#controls > input, #controls > select {
|
|
40
|
+
width: 100%;
|
|
41
|
+
display: block;
|
|
42
|
+
}
|
|
43
|
+
|
|
44
|
+
#volume-streaming-wrapper {
|
|
45
|
+
position: absolute;
|
|
46
|
+
top: 100px;
|
|
47
|
+
left: 780px;
|
|
48
|
+
width: 300px;
|
|
49
|
+
}
|
|
50
|
+
</style>
|
|
51
|
+
<link rel="stylesheet" type="text/css" href="molstar.css" />
|
|
52
|
+
<script type="text/javascript" src="./index.js"></script>
|
|
53
|
+
</head>
|
|
54
|
+
<body>
|
|
55
|
+
<div id='controls'>
|
|
56
|
+
<h3>Source</h3>
|
|
57
|
+
<input type='text' id='url' placeholder='url' style='width: 400px' />
|
|
58
|
+
<input type='text' id='assemblyId' placeholder='assembly id' />
|
|
59
|
+
<select id='format'>
|
|
60
|
+
<option value='cif' selected>CIF</option>
|
|
61
|
+
<option value='pdb'>PDB</option>
|
|
62
|
+
</select>
|
|
63
|
+
<input type='checkbox' id='isBinary' style="display: inline-block; width: auto" /> <label for="isBinary"> Binary</label><br />
|
|
64
|
+
</div>
|
|
65
|
+
<div id="app"></div>
|
|
66
|
+
<div id="volume-streaming-wrapper"></div>
|
|
67
|
+
<script>
|
|
68
|
+
// it might be a good idea to define these colors in a separate script file
|
|
69
|
+
var CustomColors = [0x00ff00, 0x0000ff];
|
|
70
|
+
|
|
71
|
+
// create an instance of the plugin
|
|
72
|
+
var PluginWrapper = new MolStarProteopediaWrapper();
|
|
73
|
+
|
|
74
|
+
console.log('Wrapper version', MolStarProteopediaWrapper.VERSION_MAJOR, MolStarProteopediaWrapper.VERSION_MINOR);
|
|
75
|
+
|
|
76
|
+
function $(id) { return document.getElementById(id); }
|
|
77
|
+
|
|
78
|
+
var pdbId = '1cbs', assemblyId= 'preferred', isBinary = true;
|
|
79
|
+
var url = 'https://www.ebi.ac.uk/pdbe/entry-files/download/' + pdbId + '.bcif'
|
|
80
|
+
var format = 'cif';
|
|
81
|
+
|
|
82
|
+
$('url').value = url;
|
|
83
|
+
$('url').onchange = function (e) { url = e.target.value; }
|
|
84
|
+
$('assemblyId').value = assemblyId;
|
|
85
|
+
$('assemblyId').onchange = function (e) { assemblyId = e.target.value; }
|
|
86
|
+
$('format').value = format;
|
|
87
|
+
$('format').onchange = function (e) { format = e.target.value; }
|
|
88
|
+
$('isBinary').checked = isBinary;
|
|
89
|
+
$('isBinary').onchange = function (e) { isBinary = !!e.target.checked; };
|
|
90
|
+
|
|
91
|
+
function loadAndSnapshot(params) {
|
|
92
|
+
PluginWrapper.load(params).then(() => {
|
|
93
|
+
setTimeout(() => snapshot = PluginWrapper.plugin.state.getSnapshot({ canvas3d: false /* do not save spinning state */ }), 500);
|
|
94
|
+
});
|
|
95
|
+
}
|
|
96
|
+
|
|
97
|
+
var representationStyle = {
|
|
98
|
+
// sequence: { coloring: 'proteopedia-custom' }, // or just { }
|
|
99
|
+
hetGroups: { kind: 'ball-and-stick' }, // or 'spacefill
|
|
100
|
+
water: { hide: true },
|
|
101
|
+
snfg3d: { hide: false }
|
|
102
|
+
};
|
|
103
|
+
|
|
104
|
+
PluginWrapper.init('app' /** or document.getElementById('app') */, {
|
|
105
|
+
customColorList: CustomColors
|
|
106
|
+
}).then(() => {
|
|
107
|
+
PluginWrapper.setBackground(0xffffff);
|
|
108
|
+
loadAndSnapshot({ url: url, format: format, isBinary: isBinary, assemblyId: assemblyId, representationStyle: representationStyle });
|
|
109
|
+
PluginWrapper.toggleSpin();
|
|
110
|
+
});
|
|
111
|
+
|
|
112
|
+
PluginWrapper.events.modelInfo.subscribe(function (info) {
|
|
113
|
+
console.log('Model Info', info);
|
|
114
|
+
listHetGroups(info);
|
|
115
|
+
});
|
|
116
|
+
|
|
117
|
+
addControl('Load Asym Unit', () => loadAndSnapshot({ url: url, format: format, isBinary }));
|
|
118
|
+
addControl('Load Assembly', () => loadAndSnapshot({ url: url, format: format, isBinary, assemblyId: assemblyId }));
|
|
119
|
+
|
|
120
|
+
addSeparator();
|
|
121
|
+
|
|
122
|
+
addHeader('Representation');
|
|
123
|
+
|
|
124
|
+
addControl('Custom Chain Colors', () => PluginWrapper.updateStyle({ sequence: { coloring: 'proteopedia-custom' } }, true));
|
|
125
|
+
addControl('Default Chain Colors', () => PluginWrapper.updateStyle({ sequence: { } }, true));
|
|
126
|
+
|
|
127
|
+
addControl('HET Spacefill', () => PluginWrapper.updateStyle({ hetGroups: { kind: 'spacefill' } }, true));
|
|
128
|
+
addControl('HET Ball-and-stick', () => PluginWrapper.updateStyle({ hetGroups: { kind: 'ball-and-stick' } }, true));
|
|
129
|
+
|
|
130
|
+
addControl('Hide 3DSNFG', () => PluginWrapper.updateStyle({ snfg3d: { hide: true } }, true));
|
|
131
|
+
addControl('Show 3DSNFG', () => PluginWrapper.updateStyle({ snfg3d: { hide: false } }, true));
|
|
132
|
+
|
|
133
|
+
addControl('Hide Water', () => PluginWrapper.updateStyle({ water: { hide: true } }, true));
|
|
134
|
+
addControl('Show Water', () => PluginWrapper.updateStyle({ water: { hide: false } }, true));
|
|
135
|
+
|
|
136
|
+
addSeparator();
|
|
137
|
+
|
|
138
|
+
addHeader('Camera');
|
|
139
|
+
addControl('Reset Position', () => PluginWrapper.camera.resetPosition());
|
|
140
|
+
addControl('Toggle Spin', () => PluginWrapper.camera.toggleSpin());
|
|
141
|
+
// Same as "wheel icon" and Viewport options
|
|
142
|
+
// addControl('Clip', () => PluginWrapper.viewport.setSettings({ clip: [33, 66] }));
|
|
143
|
+
// addControl('Reset Clip', () => PluginWrapper.viewport.setSettings({ clip: [1, 100] }));
|
|
144
|
+
|
|
145
|
+
addSeparator();
|
|
146
|
+
|
|
147
|
+
addHeader('Animation');
|
|
148
|
+
|
|
149
|
+
// adjust this number to make the animation faster or slower
|
|
150
|
+
// requires to "restart" the animation if changed
|
|
151
|
+
PluginWrapper.animate.modelIndex.targetFps = 30;
|
|
152
|
+
|
|
153
|
+
addControl('Play To End', () => PluginWrapper.animate.modelIndex.onceForward());
|
|
154
|
+
addControl('Play To Start', () => PluginWrapper.animate.modelIndex.onceBackward());
|
|
155
|
+
addControl('Play Palindrome', () => PluginWrapper.animate.modelIndex.palindrome());
|
|
156
|
+
addControl('Play Loop', () => PluginWrapper.animate.modelIndex.loop());
|
|
157
|
+
addControl('Stop', () => PluginWrapper.animate.modelIndex.stop());
|
|
158
|
+
|
|
159
|
+
addSeparator();
|
|
160
|
+
addHeader('Misc');
|
|
161
|
+
|
|
162
|
+
addControl('Apply Evo Cons Style', () => PluginWrapper.coloring.evolutionaryConservation());
|
|
163
|
+
addControl('Apply Evo Cons Colors', () => PluginWrapper.coloring.evolutionaryConservation({ sequence: true, het: false, keepStyle: true }));
|
|
164
|
+
addControl('Default Visuals', () => PluginWrapper.updateStyle());
|
|
165
|
+
|
|
166
|
+
addSeparator();
|
|
167
|
+
addHeader('HET Groups');
|
|
168
|
+
|
|
169
|
+
addControl('Reset', () => PluginWrapper.hetGroups.reset());
|
|
170
|
+
addHetGroupsContainer();
|
|
171
|
+
|
|
172
|
+
addSeparator();
|
|
173
|
+
addHeader('Exp. Data');
|
|
174
|
+
addControl('Init', () => PluginWrapper.experimentalData.init($('volume-streaming-wrapper')));
|
|
175
|
+
addControl('Remove', () => PluginWrapper.experimentalData.remove());
|
|
176
|
+
|
|
177
|
+
addSeparator();
|
|
178
|
+
addHeader('State');
|
|
179
|
+
|
|
180
|
+
var snapshot;
|
|
181
|
+
addControl('Set Snapshot', () => {
|
|
182
|
+
// const options = { data: true, behavior: false, animation: false, interactivity: false, canvas3d: false, camera: false, cameraTransition: false };
|
|
183
|
+
snapshot = PluginWrapper.plugin.state.getSnapshot(/** options */);
|
|
184
|
+
// console.log(JSON.stringify(snapshot, null, 2));
|
|
185
|
+
});
|
|
186
|
+
addControl('Restore Snapshot', () => {
|
|
187
|
+
if (!snapshot) return;
|
|
188
|
+
PluginWrapper.snapshot.set(snapshot);
|
|
189
|
+
});
|
|
190
|
+
addControl('Download State', () => {
|
|
191
|
+
PluginWrapper.snapshot.download('molj');
|
|
192
|
+
});
|
|
193
|
+
addControl('Download Session', () => {
|
|
194
|
+
PluginWrapper.snapshot.download('molx');
|
|
195
|
+
});
|
|
196
|
+
|
|
197
|
+
////////////////////////////////////////////////////////
|
|
198
|
+
|
|
199
|
+
function addHetGroupsContainer() {
|
|
200
|
+
var div = document.createElement('div');
|
|
201
|
+
div.id = 'het-groups';
|
|
202
|
+
$('controls').appendChild(div);
|
|
203
|
+
}
|
|
204
|
+
|
|
205
|
+
function addControl(label, action) {
|
|
206
|
+
var btn = document.createElement('button');
|
|
207
|
+
btn.onclick = action;
|
|
208
|
+
btn.innerText = label;
|
|
209
|
+
$('controls').appendChild(btn);
|
|
210
|
+
}
|
|
211
|
+
|
|
212
|
+
function addSeparator() {
|
|
213
|
+
var hr = document.createElement('hr');
|
|
214
|
+
$('controls').appendChild(hr);
|
|
215
|
+
}
|
|
216
|
+
|
|
217
|
+
function addHeader(header) {
|
|
218
|
+
var h = document.createElement('h3');
|
|
219
|
+
h.innerText = header;
|
|
220
|
+
$('controls').appendChild(h);
|
|
221
|
+
}
|
|
222
|
+
|
|
223
|
+
function listHetGroups(info) {
|
|
224
|
+
var div = $('het-groups');
|
|
225
|
+
div.innerHTML = '';
|
|
226
|
+
info.hetResidues.forEach(function (r) {
|
|
227
|
+
var l = document.createElement('button');
|
|
228
|
+
l.innerText = r.name;
|
|
229
|
+
l.onclick = function () {
|
|
230
|
+
PluginWrapper.hetGroups.focusFirst(r.name, { doNotLabelWaters: true });
|
|
231
|
+
};
|
|
232
|
+
div.appendChild(l);
|
|
233
|
+
});
|
|
234
|
+
}
|
|
235
|
+
</script>
|
|
236
|
+
</body>
|
|
237
237
|
</html>
|