molstar 3.31.2 → 3.31.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +202 -202
- package/build/viewer/embedded.html +52 -52
- package/build/viewer/index.html +115 -115
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/embedded.html +52 -52
- package/lib/apps/viewer/index.html +115 -115
- package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +4 -2
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.js +1 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.vert.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/cylinders.vert.js +2 -2
- package/lib/commonjs/mol-gl/shader/spheres.vert.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/spheres.vert.js +2 -2
- package/lib/commonjs/mol-math/linear-algebra/matrix/principal-axes.js +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -1
- package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
- package/lib/commonjs/mol-util/data-source.js +2 -1
- package/lib/examples/alpha-orbitals/index.html +72 -72
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/meshes/mesh-extension.d.ts +4 -2
- package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +2 -0
- package/lib/mol-canvas3d/canvas3d.js +1 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/mol-gl/shader/cylinders.vert.d.ts +2 -2
- package/lib/mol-gl/shader/cylinders.vert.js +2 -2
- package/lib/mol-gl/shader/spheres.vert.d.ts +2 -2
- package/lib/mol-gl/shader/spheres.vert.js +2 -2
- package/lib/mol-math/linear-algebra/matrix/principal-axes.js +1 -1
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +137 -137
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -1
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -1
- package/lib/mol-script/language/builder.d.ts +1 -0
- package/lib/mol-util/data-source.js +2 -1
- package/package.json +177 -177
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@import 'colors/blue';
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$entity-current-font-color: #FFFFFF;
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$msp-btn-remove-background: #BF3A31;
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// used in LOG
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$log-message: #0CCA5D;
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$log-info: #5E3673;
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$logo-background: rgba(0,0,0,0.75);
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$entity-current-font-color: #68BEFD;
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$msp-btn-remove-background: #DE0A28;
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$msp-btn-remove-hover-font-color:#F2F4F7;
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// used in LOG
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$log-info: #5E3673;
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}
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getLoci: getInterBondLoci,
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eachLocation: eachInterBond,
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setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
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state.createGeometry = (newProps.sizeFactor !== currentProps.sizeFactor ||
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setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructureGroup, currentStructureGroup) {
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/** atom macromolecular property set */
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bool: MSymbol<import("./symbol").Arguments<import("./symbol").Arguments.PropTypes<{
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/** Alternative implementation of ajaxGetInternal (because xhr2 does not support file:// protocol) */
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"description": "A comprehensive macromolecular library.",
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"rebuild": "npm run clean && npm run build",
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"build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
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"build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
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"@types/react": "^18.0.27",
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"@typescript-eslint/eslint-plugin": "^5.50.0",
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"crypto-browserify": "^3.12.0",
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"eslint": "^8.33.0",
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"extra-watch-webpack-plugin": "^1.0.3",
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"file-loader": "^6.2.0",
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"fs-extra": "^11.1.0",
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"graphql": "^16.6.0",
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"http-server": "^14.1.1",
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"mini-css-extract-plugin": "^2.7.2",
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"path-browserify": "^1.0.1",
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"raw-loader": "^4.0.2",
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"react": "^18.2.0",
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"react-dom": "^18.2.0",
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"sass": "^1.58.0",
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"sass-loader": "^13.2.0",
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"simple-git": "^3.16.0",
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"stream-browserify": "^3.0.0",
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"typescript": "^4.9.5",
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"webpack": "^5.75.0",
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"webpack-cli": "^5.0.1"
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},
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"@types/argparse": "^2.0.10",
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"@types/express": "^4.17.17",
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"@types/node": "^16.18.12",
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"@types/node-fetch": "^2.6.2",
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"@types/swagger-ui-dist": "3.30.1",
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"argparse": "^2.0.1",
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"compression": "^1.7.4",
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"express": "^4.18.2",
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"h264-mp4-encoder": "^1.0.12",
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"immer": "^9.0.19",
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|
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"immutable": "^4.2.3",
|
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|
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"node-fetch": "^2.6.9",
|
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|
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"rxjs": "^7.8.0",
|
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|
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"swagger-ui-dist": "^4.15.5",
|
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|
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"tslib": "^2.5.0",
|
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|
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"util.promisify": "^1.1.1",
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"xhr2": "^0.2.1"
|
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|
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},
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|
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"peerDependencies": {
|
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"react": "^18.1.0 || ^17.0.2 || ^16.14.0",
|
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"react-dom": "^18.1.0 || ^17.0.2 || ^16.14.0"
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},
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"jpeg-js": "^0.4.4",
|
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|
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|
|
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|
+
{
|
|
2
|
+
"name": "molstar",
|
|
3
|
+
"version": "3.31.3",
|
|
4
|
+
"description": "A comprehensive macromolecular library.",
|
|
5
|
+
"homepage": "https://github.com/molstar/molstar#readme",
|
|
6
|
+
"repository": {
|
|
7
|
+
"type": "git",
|
|
8
|
+
"url": "https://github.com/molstar/molstar.git"
|
|
9
|
+
},
|
|
10
|
+
"bugs": {
|
|
11
|
+
"url": "https://github.com/molstar/molstar/issues"
|
|
12
|
+
},
|
|
13
|
+
"scripts": {
|
|
14
|
+
"lint": "eslint .",
|
|
15
|
+
"lint-fix": "eslint . --fix",
|
|
16
|
+
"test": "npm install --no-save \"gl@^6.0.2\" && npm run lint && jest",
|
|
17
|
+
"jest": "jest",
|
|
18
|
+
"build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
|
|
19
|
+
"clean": "node ./scripts/clean.js",
|
|
20
|
+
"rebuild": "npm run clean && npm run build",
|
|
21
|
+
"build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
|
|
22
|
+
"build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
|
|
23
|
+
"build-extra": "cpx \"src/**/*.{scss,html,ico,jpg}\" lib/",
|
|
24
|
+
"build-webpack": "webpack --mode production --config ./webpack.config.production.js",
|
|
25
|
+
"build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
|
|
26
|
+
"watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
|
|
27
|
+
"watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
|
|
28
|
+
"watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
|
|
29
|
+
"watch-tsc": "tsc --watch --incremental",
|
|
30
|
+
"watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
|
|
31
|
+
"watch-extra": "cpx \"src/**/*.{scss,html,ico,jpg}\" lib/ --watch",
|
|
32
|
+
"watch-webpack": "webpack -w --mode development --stats minimal",
|
|
33
|
+
"watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
|
|
34
|
+
"watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
|
|
35
|
+
"serve": "http-server -p 1338 -g",
|
|
36
|
+
"model-server": "node lib/commonjs/servers/model/server.js",
|
|
37
|
+
"model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
|
|
38
|
+
"volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
|
|
39
|
+
"plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
|
|
40
|
+
"preversion": "npm run test",
|
|
41
|
+
"version": "npm run rebuild && cpx .npmignore lib/",
|
|
42
|
+
"postversion": "git push && git push --tags"
|
|
43
|
+
},
|
|
44
|
+
"files": [
|
|
45
|
+
"lib/",
|
|
46
|
+
"build/viewer/"
|
|
47
|
+
],
|
|
48
|
+
"bin": {
|
|
49
|
+
"cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
|
|
50
|
+
"cifschema": "lib/commonjs/cli/cifschema/index.js",
|
|
51
|
+
"model-server": "lib/commonjs/servers/model/server.js",
|
|
52
|
+
"model-server-query": "lib/commonjs/servers/model/query.js",
|
|
53
|
+
"model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
|
|
54
|
+
"volume-server": "lib/commonjs/servers/volume/server.js",
|
|
55
|
+
"volume-server-query": "lib/commonjs/servers/volume/query.js",
|
|
56
|
+
"volume-server-pack": "lib/commonjs/servers/volume/pack.js"
|
|
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|
+
},
|
|
58
|
+
"nodemonConfig": {
|
|
59
|
+
"ignoreRoot": [
|
|
60
|
+
"./node_modules",
|
|
61
|
+
".git"
|
|
62
|
+
],
|
|
63
|
+
"ignore": [],
|
|
64
|
+
"delay": "2500"
|
|
65
|
+
},
|
|
66
|
+
"jest": {
|
|
67
|
+
"moduleFileExtensions": [
|
|
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|
+
"ts",
|
|
69
|
+
"js"
|
|
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|
+
],
|
|
71
|
+
"transform": {
|
|
72
|
+
"\\.ts$": "ts-jest"
|
|
73
|
+
},
|
|
74
|
+
"moduleDirectories": [
|
|
75
|
+
"node_modules",
|
|
76
|
+
"lib"
|
|
77
|
+
],
|
|
78
|
+
"testEnvironmentOptions": {
|
|
79
|
+
"url": "http://localhost/"
|
|
80
|
+
},
|
|
81
|
+
"testRegex": "\\.spec\\.ts$"
|
|
82
|
+
},
|
|
83
|
+
"author": "Mol* Contributors",
|
|
84
|
+
"contributors": [
|
|
85
|
+
"Alexander Rose <alexander.rose@weirdbyte.de>",
|
|
86
|
+
"David Sehnal <david.sehnal@gmail.com>",
|
|
87
|
+
"Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
|
|
88
|
+
"Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
|
|
89
|
+
"Ludovic Autin <autin@scripps.edu>",
|
|
90
|
+
"Michal Malý <michal.maly@ibt.cas.cz>",
|
|
91
|
+
"Jiří Černý <jiri.cerny@ibt.cas.cz>",
|
|
92
|
+
"Panagiotis Tourlas <panagiot_tourlov@hotmail.com>",
|
|
93
|
+
"Adam Midlik <midlik@gmail.com>",
|
|
94
|
+
"Koya Sakuma <koya.sakuma.work@gmail.com>",
|
|
95
|
+
"Gianluca Tomasello <giagitom@gmail.com>",
|
|
96
|
+
"Ke Ma <mark.ma@rcsb.org>",
|
|
97
|
+
"Jason Pattle <jpattle@exscientia.co.uk>",
|
|
98
|
+
"David Williams <dwilliams@nobiastx.com>"
|
|
99
|
+
],
|
|
100
|
+
"license": "MIT",
|
|
101
|
+
"devDependencies": {
|
|
102
|
+
"@graphql-codegen/add": "^4.0.0",
|
|
103
|
+
"@graphql-codegen/cli": "^3.0.0",
|
|
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|
+
"@graphql-codegen/time": "^4.0.0",
|
|
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|
+
"@graphql-codegen/typescript": "^3.0.0",
|
|
106
|
+
"@graphql-codegen/typescript-graphql-files-modules": "^2.2.1",
|
|
107
|
+
"@graphql-codegen/typescript-graphql-request": "^4.5.8",
|
|
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|
+
"@graphql-codegen/typescript-operations": "^3.0.0",
|
|
109
|
+
"@types/cors": "^2.8.13",
|
|
110
|
+
"@types/gl": "^6.0.2",
|
|
111
|
+
"@types/jpeg-js": "^0.3.7",
|
|
112
|
+
"@types/pngjs": "^6.0.1",
|
|
113
|
+
"@types/jest": "^29.4.0",
|
|
114
|
+
"@types/react": "^18.0.27",
|
|
115
|
+
"@types/react-dom": "^18.0.10",
|
|
116
|
+
"@typescript-eslint/eslint-plugin": "^5.50.0",
|
|
117
|
+
"@typescript-eslint/parser": "^5.50.0",
|
|
118
|
+
"benchmark": "^2.1.4",
|
|
119
|
+
"concurrently": "^7.6.0",
|
|
120
|
+
"cpx2": "^4.2.0",
|
|
121
|
+
"crypto-browserify": "^3.12.0",
|
|
122
|
+
"css-loader": "^6.7.3",
|
|
123
|
+
"eslint": "^8.33.0",
|
|
124
|
+
"extra-watch-webpack-plugin": "^1.0.3",
|
|
125
|
+
"file-loader": "^6.2.0",
|
|
126
|
+
"fs-extra": "^11.1.0",
|
|
127
|
+
"graphql": "^16.6.0",
|
|
128
|
+
"http-server": "^14.1.1",
|
|
129
|
+
"jest": "^29.4.1",
|
|
130
|
+
"mini-css-extract-plugin": "^2.7.2",
|
|
131
|
+
"path-browserify": "^1.0.1",
|
|
132
|
+
"raw-loader": "^4.0.2",
|
|
133
|
+
"react": "^18.2.0",
|
|
134
|
+
"react-dom": "^18.2.0",
|
|
135
|
+
"sass": "^1.58.0",
|
|
136
|
+
"sass-loader": "^13.2.0",
|
|
137
|
+
"simple-git": "^3.16.0",
|
|
138
|
+
"stream-browserify": "^3.0.0",
|
|
139
|
+
"style-loader": "^3.3.1",
|
|
140
|
+
"ts-jest": "^29.0.5",
|
|
141
|
+
"typescript": "^4.9.5",
|
|
142
|
+
"webpack": "^5.75.0",
|
|
143
|
+
"webpack-cli": "^5.0.1"
|
|
144
|
+
},
|
|
145
|
+
"dependencies": {
|
|
146
|
+
"@types/argparse": "^2.0.10",
|
|
147
|
+
"@types/benchmark": "^2.1.2",
|
|
148
|
+
"@types/compression": "1.7.2",
|
|
149
|
+
"@types/express": "^4.17.17",
|
|
150
|
+
"@types/node": "^16.18.12",
|
|
151
|
+
"@types/node-fetch": "^2.6.2",
|
|
152
|
+
"@types/swagger-ui-dist": "3.30.1",
|
|
153
|
+
"argparse": "^2.0.1",
|
|
154
|
+
"body-parser": "^1.20.1",
|
|
155
|
+
"compression": "^1.7.4",
|
|
156
|
+
"cors": "^2.8.5",
|
|
157
|
+
"express": "^4.18.2",
|
|
158
|
+
"h264-mp4-encoder": "^1.0.12",
|
|
159
|
+
"immer": "^9.0.19",
|
|
160
|
+
"immutable": "^4.2.3",
|
|
161
|
+
"node-fetch": "^2.6.9",
|
|
162
|
+
"rxjs": "^7.8.0",
|
|
163
|
+
"swagger-ui-dist": "^4.15.5",
|
|
164
|
+
"tslib": "^2.5.0",
|
|
165
|
+
"util.promisify": "^1.1.1",
|
|
166
|
+
"xhr2": "^0.2.1"
|
|
167
|
+
},
|
|
168
|
+
"peerDependencies": {
|
|
169
|
+
"react": "^18.1.0 || ^17.0.2 || ^16.14.0",
|
|
170
|
+
"react-dom": "^18.1.0 || ^17.0.2 || ^16.14.0"
|
|
171
|
+
},
|
|
172
|
+
"optionalDependencies": {
|
|
173
|
+
"gl": "^6.0.2",
|
|
174
|
+
"jpeg-js": "^0.4.4",
|
|
175
|
+
"pngjs": "^6.0.0"
|
|
176
|
+
}
|
|
177
|
+
}
|