molstar 3.0.0-dev.7 → 3.0.1

package/lib/commonjs/extensions/g3d/format.js

@@ -1,232 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.G3DFormat = exports.LoadG3D = exports.G3DTrajectory = exports.G3DHeaderFromUrl = exports.G3DHeaderFromFile = exports.G3dHeaderObject = exports.G3dProvider = void 0;
-var tslib_1 = require("tslib");
-var trajectory_1 = require("../../mol-plugin-state/formats/trajectory");
-var objects_1 = require("../../mol-plugin-state/objects");
-var behavior_1 = require("../../mol-plugin/behavior");
-var base_1 = require("../../mol-script/runtime/query/base");
-var mol_state_1 = require("../../mol-state");
-var mol_task_1 = require("../../mol-task");
-var param_definition_1 = require("../../mol-util/param-definition");
-var data_1 = require("./data");
-var model_1 = require("./model");
-var transforms_1 = require("../../mol-plugin-state/transforms");
-var structure_representation_params_1 = require("../../mol-plugin-state/helpers/structure-representation-params");
-var string_1 = require("../../mol-util/string");
-var object_1 = require("../../mol-util/object");
-exports.G3dProvider = {
-    label: 'G3D',
-    description: 'G3D',
-    category: trajectory_1.TrajectoryFormatCategory,
-    binaryExtensions: ['g3d'],
-    parse: function (plugin, data) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
-        var trajectory;
-        return (0, tslib_1.__generator)(this, function (_a) {
-            switch (_a.label) {
-                case 0: return [4 /*yield*/, plugin.state.data.build()
-                        .to(data)
-                        .apply(exports.G3DHeaderFromFile, {}, { state: { isGhost: true } })
-                        .apply(exports.G3DTrajectory)
-                        .commit()];
-                case 1:
-                    trajectory = _a.sent();
-                    return [2 /*return*/, { trajectory: trajectory }];
-            }
-        });
-    }); },
-    visuals: defaultStructure
-};
-function defaultStructure(plugin, data) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var builder, model, structure, info, components, repr, _i, _a, h;
-        return (0, tslib_1.__generator)(this, function (_b) {
-            switch (_b.label) {
-                case 0:
-                    builder = plugin.builders.structure;
-                    return [4 /*yield*/, builder.createModel(data.trajectory)];
-                case 1:
-                    model = _b.sent();
-                    if (!model)
-                        return [2 /*return*/];
-                    return [4 /*yield*/, builder.createStructure(model)];
-                case 2:
-                    structure = _b.sent();
-                    info = model_1.G3dInfoDataProperty.get(model.data);
-                    if (!info)
-                        return [2 /*return*/];
-                    components = plugin.build().to(structure);
-                    repr = (0, structure_representation_params_1.createStructureRepresentationParams)(plugin, void 0, {
-                        type: 'cartoon',
-                        color: 'polymer-index',
-                        size: 'uniform',
-                        sizeParams: { value: 0.25 }
-                    });
-                    for (_i = 0, _a = info.haplotypes; _i < _a.length; _i++) {
-                        h = _a[_i];
-                        components
-                            .apply(transforms_1.StateTransforms.Model.StructureSelectionFromExpression, { expression: (0, model_1.g3dHaplotypeQuery)(h), label: (0, string_1.stringToWords)(h) })
-                            .apply(transforms_1.StateTransforms.Representation.StructureRepresentation3D, repr);
-                    }
-                    return [4 /*yield*/, components.commit()];
-                case 3:
-                    _b.sent();
-                    return [2 /*return*/];
-            }
-        });
-    });
-}
-var G3dHeaderObject = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(G3dHeaderObject, _super);
-    function G3dHeaderObject() {
-        return _super !== null && _super.apply(this, arguments) || this;
-    }
-    return G3dHeaderObject;
-}(objects_1.PluginStateObject.Create({ name: 'G3D Header', typeClass: 'Data' })));
-exports.G3dHeaderObject = G3dHeaderObject;
-exports.G3DHeaderFromFile = objects_1.PluginStateTransform.BuiltIn({
-    name: 'g3d-header-from-file',
-    display: { name: 'G3D Header', description: 'Parse G3D Header' },
-    from: objects_1.PluginStateObject.Data.Binary,
-    to: G3dHeaderObject
-})({
-    apply: function (_a, plugin) {
-        var _this = this;
-        var a = _a.a;
-        return mol_task_1.Task.create('Parse G3D', function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-            var header;
-            return (0, tslib_1.__generator)(this, function (_a) {
-                switch (_a.label) {
-                    case 0: return [4 /*yield*/, (0, data_1.getG3dHeader)(plugin, a.data)];
-                    case 1:
-                        header = _a.sent();
-                        return [2 /*return*/, new G3dHeaderObject({ header: header, urlOrData: a.data, cache: {} }, { label: header.name, description: header.genome })];
-                }
-            });
-        }); });
-    }
-});
-exports.G3DHeaderFromUrl = objects_1.PluginStateTransform.BuiltIn({
-    name: 'g3d-header-from-url',
-    display: { name: 'G3D Header', description: 'Parse G3D Header' },
-    params: { url: param_definition_1.ParamDefinition.Text('') },
-    from: objects_1.PluginStateObject.Root,
-    to: G3dHeaderObject
-})({
-    apply: function (_a, plugin) {
-        var _this = this;
-        var params = _a.params;
-        return mol_task_1.Task.create('Parse G3D', function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-            var header;
-            return (0, tslib_1.__generator)(this, function (_a) {
-                switch (_a.label) {
-                    case 0: return [4 /*yield*/, (0, data_1.getG3dHeader)(plugin, params.url)];
-                    case 1:
-                        header = _a.sent();
-                        return [2 /*return*/, new G3dHeaderObject({ header: header, urlOrData: params.url, cache: {} }, { label: header.name, description: header.genome })];
-                }
-            });
-        }); });
-    }
-});
-exports.G3DTrajectory = objects_1.PluginStateTransform.BuiltIn({
-    name: 'g3d-trajecotry',
-    display: { name: 'G3D Trajectory', description: 'Create G3D Trajectory' },
-    params: function (a) {
-        if (!a)
-            return { resolution: param_definition_1.ParamDefinition.Numeric(200000) };
-        var rs = a.data.header.resolutions;
-        return {
-            resolution: param_definition_1.ParamDefinition.Select(rs[rs.length - 1], rs.map(function (r) { return [r, '' + r]; }))
-        };
-    },
-    from: G3dHeaderObject,
-    to: objects_1.PluginStateObject.Molecule.Trajectory
-})({
-    apply: function (_a, plugin) {
-        var _this = this;
-        var a = _a.a, params = _a.params;
-        return mol_task_1.Task.create('G3D Trajectory', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-            var data, traj;
-            return (0, tslib_1.__generator)(this, function (_a) {
-                switch (_a.label) {
-                    case 0:
-                        if (a.data.cache[params.resolution]) {
-                            return [2 /*return*/, new objects_1.PluginStateObject.Molecule.Trajectory(a.data.cache[params.resolution], { label: a.label, description: a.description })];
-                        }
-                        return [4 /*yield*/, (0, data_1.getG3dDataBlock)(plugin, a.data.header, a.data.urlOrData, params.resolution)];
-                    case 1:
-                        data = _a.sent();
-                        return [4 /*yield*/, (0, model_1.trajectoryFromG3D)(data).runInContext(ctx)];
-                    case 2:
-                        traj = _a.sent();
-                        a.data.cache[params.resolution] = traj;
-                        return [2 /*return*/, new objects_1.PluginStateObject.Molecule.Trajectory(traj, { label: a.label, description: a.description })];
-                }
-            });
-        }); });
-    }
-});
-exports.LoadG3D = mol_state_1.StateAction.build({
-    display: { name: 'Load Genome 3D (G3D)', description: 'Load G3D file from the specified URL.' },
-    from: objects_1.PluginStateObject.Root,
-    params: { url: param_definition_1.ParamDefinition.Text('') }
-})(function (_a, ctx) {
-    var params = _a.params, state = _a.state;
-    return mol_task_1.Task.create('Genome3D', function (taskCtx) {
-        return state.transaction(function () { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
-            var trajectory;
-            return (0, tslib_1.__generator)(this, function (_a) {
-                switch (_a.label) {
-                    case 0:
-                        if (params.url.trim().length === 0) {
-                            throw new Error('Specify URL');
-                        }
-                        ctx.behaviors.layout.leftPanelTabName.next('data');
-                        return [4 /*yield*/, state.build().toRoot()
-                                .apply(exports.G3DHeaderFromUrl, { url: params.url })
-                                .apply(exports.G3DTrajectory)
-                                .commit()];
-                    case 1:
-                        trajectory = _a.sent();
-                        return [4 /*yield*/, defaultStructure(ctx, { trajectory: trajectory })];
-                    case 2:
-                        _a.sent();
-                        return [2 /*return*/];
-                }
-            });
-        }); }).runInContext(taskCtx);
-    });
-});
-exports.G3DFormat = behavior_1.PluginBehavior.create({
-    name: 'g3d',
-    category: 'misc',
-    display: {
-        name: 'G3D',
-        description: 'G3D Format Support'
-    },
-    ctor: /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(class_1, _super);
-        function class_1() {
-            return _super !== null && _super.apply(this, arguments) || this;
-        }
-        class_1.prototype.register = function () {
-            this.ctx.state.data.actions.add(exports.LoadG3D);
-            (0, object_1.objectForEach)(model_1.G3dSymbols, function (s) { return base_1.DefaultQueryRuntimeTable.addSymbol(s); });
-            this.ctx.managers.lociLabels.addProvider(model_1.G3dLabelProvider);
-        };
-        class_1.prototype.unregister = function () {
-            this.ctx.state.data.actions.remove(exports.LoadG3D);
-            (0, object_1.objectForEach)(model_1.G3dSymbols, function (s) { return base_1.DefaultQueryRuntimeTable.removeSymbol(s); });
-            this.ctx.managers.lociLabels.removeProvider(model_1.G3dLabelProvider);
-        };
-        return class_1;
-    }(behavior_1.PluginBehavior.Handler))
-});
-//# sourceMappingURL=format.js.map

package/lib/commonjs/extensions/g3d/model.js

@@ -1,215 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.G3dLabelProvider = exports.g3dRegionQuery = exports.g3dChromosomeQuery = exports.g3dHaplotypeQuery = exports.G3dInfoDataProperty = exports.G3dSymbols = exports.trajectoryFromG3D = void 0;
-var tslib_1 = require("tslib");
-var db_1 = require("../../mol-data/db");
-var int_1 = require("../../mol-data/int");
-var linear_algebra_1 = require("../../mol-math/linear-algebra");
-var parser_1 = require("../../mol-model-formats/structure/basic/parser");
-var schema_1 = require("../../mol-model-formats/structure/basic/schema");
-var entity_1 = require("../../mol-model-formats/structure/common/entity");
-var loci_1 = require("../../mol-model/loci");
-var structure_1 = require("../../mol-model/structure");
-var builder_1 = require("../../mol-script/language/builder");
-var symbol_1 = require("../../mol-script/language/symbol");
-var type_1 = require("../../mol-script/language/type");
-var base_1 = require("../../mol-script/runtime/query/base");
-var mol_task_1 = require("../../mol-task");
-var object_1 = require("../../mol-util/object");
-var property_1 = require("../../mol-model-formats/structure/common/property");
-function getColumns(block) {
-    var data = block.data;
-    var size = 0;
-    (0, object_1.objectForEach)(data, function (h) { return (0, object_1.objectForEach)(h, function (g) { return size += g.start.length; }); });
-    var normalized = {
-        entity_id: new Array(size),
-        chromosome: new Array(size),
-        seq_id_begin: new Int32Array(size),
-        seq_id_end: new Int32Array(size),
-        start: new Int32Array(size),
-        x: new Float32Array(size),
-        y: new Float32Array(size),
-        z: new Float32Array(size),
-        r: new Float32Array(size),
-        haplotype: new Array(size)
-    };
-    var p = [(0, linear_algebra_1.Vec3)(), (0, linear_algebra_1.Vec3)(), (0, linear_algebra_1.Vec3)()];
-    var o = 0;
-    (0, object_1.objectForEach)(data, function (hs, h) {
-        (0, object_1.objectForEach)(hs, function (chs, ch) {
-            var entity_id = "".concat(ch, "-").concat(h);
-            var l = chs.start.length;
-            if (l === 0)
-                return;
-            var x = chs.x[0];
-            var y = chs.y[0];
-            var z = chs.z[0];
-            linear_algebra_1.Vec3.set(p[0], x, y, z);
-            linear_algebra_1.Vec3.set(p[2], x, y, z);
-            for (var i = 0; i < l; i++) {
-                normalized.entity_id[o] = entity_id;
-                normalized.chromosome[o] = ch;
-                normalized.start[o] = chs.start[i];
-                normalized.seq_id_begin[o] = o;
-                normalized.seq_id_end[o] = o;
-                x = chs.x[i];
-                y = chs.y[i];
-                z = chs.z[i];
-                linear_algebra_1.Vec3.set(p[1], x, y, z);
-                if (i + 1 < l)
-                    linear_algebra_1.Vec3.set(p[2], chs.x[i + 1], chs.y[i + 1], chs.z[i + 1]);
-                else
-                    linear_algebra_1.Vec3.set(p[2], x, y, z);
-                normalized.x[o] = x;
-                normalized.y[o] = y;
-                normalized.z[o] = z;
-                normalized.r[o] = 2 / 3 * Math.min(linear_algebra_1.Vec3.distance(p[0], p[1]), linear_algebra_1.Vec3.distance(p[1], p[2]));
-                normalized.haplotype[o] = h;
-                var _p = p[0];
-                p[0] = p[1];
-                p[1] = _p;
-                o++;
-            }
-            if (l === 1) {
-                normalized.r[o - 1] = 1;
-            }
-        });
-    });
-    return normalized;
-}
-function getTraj(ctx, data) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var normalized, rowCount, entityIds, entityBuilder, eName, i, e, entityId, ihm_sphere_obj_site, basic, models;
-        return (0, tslib_1.__generator)(this, function (_a) {
-            switch (_a.label) {
-                case 0:
-                    normalized = getColumns(data);
-                    rowCount = normalized.seq_id_begin.length;
-                    entityIds = new Array(rowCount);
-                    entityBuilder = new entity_1.EntityBuilder();
-                    eName = { customName: '' };
-                    for (i = 0; i < rowCount; ++i) {
-                        e = normalized.entity_id[i];
-                        eName.customName = e;
-                        entityId = entityBuilder.getEntityId(e, 7 /* DNA */, e, eName);
-                        entityIds[i] = entityId;
-                    }
-                    ihm_sphere_obj_site = db_1.Table.ofPartialColumns(schema_1.BasicSchema.ihm_sphere_obj_site, {
-                        id: db_1.Column.range(0, rowCount),
-                        entity_id: db_1.Column.ofStringArray(entityIds),
-                        seq_id_begin: db_1.Column.ofIntArray(normalized.seq_id_begin),
-                        seq_id_end: db_1.Column.ofIntArray(normalized.seq_id_end),
-                        asym_id: db_1.Column.ofStringArray(normalized.chromosome),
-                        Cartn_x: db_1.Column.ofFloatArray(normalized.x),
-                        Cartn_y: db_1.Column.ofFloatArray(normalized.y),
-                        Cartn_z: db_1.Column.ofFloatArray(normalized.z),
-                        object_radius: db_1.Column.ofFloatArray(normalized.r),
-                        rmsf: db_1.Column.ofConst(0, rowCount, db_1.Column.Schema.float),
-                        model_id: db_1.Column.ofConst(1, rowCount, db_1.Column.Schema.int),
-                    }, rowCount);
-                    basic = (0, schema_1.createBasic)({
-                        entity: entityBuilder.getEntityTable(),
-                        ihm_model_list: db_1.Table.ofPartialColumns(schema_1.BasicSchema.ihm_model_list, {
-                            model_id: db_1.Column.ofIntArray([1]),
-                            model_name: db_1.Column.ofStringArray(['G3D Model']),
-                        }, 1),
-                        ihm_sphere_obj_site: ihm_sphere_obj_site
-                    });
-                    return [4 /*yield*/, (0, parser_1.createModels)(basic, { kind: 'g3d', name: 'G3D', data: data }, ctx)];
-                case 1:
-                    models = _a.sent();
-                    exports.G3dInfoDataProperty.set(models.representative, {
-                        haplotypes: Object.keys(data.data),
-                        haplotype: normalized.haplotype,
-                        resolution: data.resolution,
-                        start: normalized.start,
-                        chroms: normalized.chromosome,
-                    });
-                    return [2 /*return*/, models];
-            }
-        });
-    });
-}
-function trajectoryFromG3D(data) {
-    var _this = this;
-    return mol_task_1.Task.create('Parse G3D', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
-            return [2 /*return*/, getTraj(ctx, data)];
-        });
-    }); });
-}
-exports.trajectoryFromG3D = trajectoryFromG3D;
-exports.G3dSymbols = {
-    haplotype: base_1.QuerySymbolRuntime.Dynamic((0, symbol_1.CustomPropSymbol)('g3d', 'haplotype', type_1.Type.Str), function (ctx) {
-        if (structure_1.Unit.isAtomic(ctx.element.unit))
-            return '';
-        var info = exports.G3dInfoDataProperty.get(ctx.element.unit.model);
-        if (!info)
-            return '';
-        var seqId = ctx.element.unit.model.coarseHierarchy.spheres.seq_id_begin.value(ctx.element.element);
-        return info.haplotype[seqId] || '';
-    }),
-    chromosome: base_1.QuerySymbolRuntime.Dynamic((0, symbol_1.CustomPropSymbol)('g3d', 'chromosome', type_1.Type.Str), function (ctx) {
-        if (structure_1.Unit.isAtomic(ctx.element.unit))
-            return '';
-        var asym_id = ctx.element.unit.model.coarseHierarchy.spheres.asym_id;
-        return asym_id.value(ctx.element.element) || '';
-    }),
-    region: base_1.QuerySymbolRuntime.Dynamic((0, symbol_1.CustomPropSymbol)('g3d', 'region', type_1.Type.Num), function (ctx) {
-        if (structure_1.Unit.isAtomic(ctx.element.unit))
-            return '';
-        var info = exports.G3dInfoDataProperty.get(ctx.element.unit.model);
-        if (!info)
-            return 0;
-        var seqId = ctx.element.unit.model.coarseHierarchy.spheres.seq_id_begin.value(ctx.element.element);
-        return info.start[seqId] || 0;
-    })
-};
-exports.G3dInfoDataProperty = property_1.FormatPropertyProvider.create({ name: 'g3d_info' });
-function g3dHaplotypeQuery(haplotype) {
-    return builder_1.MolScriptBuilder.struct.generator.atomGroups({
-        'chain-test': builder_1.MolScriptBuilder.core.rel.eq([exports.G3dSymbols.haplotype.symbol(), haplotype]),
-    });
-}
-exports.g3dHaplotypeQuery = g3dHaplotypeQuery;
-function g3dChromosomeQuery(chr) {
-    return builder_1.MolScriptBuilder.struct.generator.atomGroups({
-        'chain-test': builder_1.MolScriptBuilder.core.logic.and([
-            builder_1.MolScriptBuilder.core.rel.eq([builder_1.MolScriptBuilder.ammp('objectPrimitive'), 'sphere']),
-            builder_1.MolScriptBuilder.core.rel.eq([exports.G3dSymbols.chromosome.symbol(), chr])
-        ])
-    });
-}
-exports.g3dChromosomeQuery = g3dChromosomeQuery;
-function g3dRegionQuery(chr, start, end) {
-    return builder_1.MolScriptBuilder.struct.generator.atomGroups({
-        'chain-test': builder_1.MolScriptBuilder.core.logic.and([
-            builder_1.MolScriptBuilder.core.rel.eq([builder_1.MolScriptBuilder.ammp('objectPrimitive'), 'sphere']),
-            builder_1.MolScriptBuilder.core.rel.eq([exports.G3dSymbols.chromosome.symbol(), chr])
-        ]),
-        'residue-test': builder_1.MolScriptBuilder.core.rel.inRange([exports.G3dSymbols.region.symbol(), start, end])
-    });
-}
-exports.g3dRegionQuery = g3dRegionQuery;
-;
-exports.G3dLabelProvider = {
-    label: function (e) {
-        if (e.kind !== 'element-loci' || loci_1.Loci.isEmpty(e))
-            return;
-        var first = e.elements[0];
-        if (e.elements.length !== 1 || structure_1.Unit.isAtomic(first.unit))
-            return;
-        var info = exports.G3dInfoDataProperty.get(first.unit.model);
-        if (!info)
-            return;
-        var eI = first.unit.elements[int_1.OrderedSet.getAt(first.indices, 0)];
-        var seqId = first.unit.model.coarseHierarchy.spheres.seq_id_begin.value(eI);
-        return "<b>Start:</b> ".concat(info.start[seqId], " <small>| resolution ").concat(info.resolution, "<small>");
-    }
-};
-//# sourceMappingURL=model.js.map

package/lib/commonjs/extensions/geo-export/controls.js

@@ -1,109 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.GeometryControls = exports.GeometryParams = void 0;
-var tslib_1 = require("tslib");
-var geometry_1 = require("../../mol-math/geometry");
-var component_1 = require("../../mol-plugin-state/component");
-var mol_task_1 = require("../../mol-task");
-var objects_1 = require("../../mol-plugin-state/objects");
-var mol_state_1 = require("../../mol-state");
-var param_definition_1 = require("../../mol-util/param-definition");
-var set_1 = require("../../mol-util/set");
-var glb_exporter_1 = require("./glb-exporter");
-var obj_exporter_1 = require("./obj-exporter");
-var stl_exporter_1 = require("./stl-exporter");
-var usdz_exporter_1 = require("./usdz-exporter");
-exports.GeometryParams = {
-    format: param_definition_1.ParamDefinition.Select('glb', [
-        ['glb', 'glTF 2.0 Binary (.glb)'],
-        ['stl', 'Stl (.stl)'],
-        ['obj', 'Wavefront (.obj)'],
-        ['usdz', 'Universal Scene Description (.usdz)']
-    ])
-};
-var GeometryControls = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(GeometryControls, _super);
-    function GeometryControls(plugin) {
-        var _this = _super.call(this) || this;
-        _this.plugin = plugin;
-        _this.behaviors = {
-            params: _this.ev.behavior(param_definition_1.ParamDefinition.getDefaultValues(exports.GeometryParams))
-        };
-        return _this;
-    }
-    GeometryControls.prototype.getFilename = function () {
-        var models = this.plugin.state.data.select(mol_state_1.StateSelection.Generators.rootsOfType(objects_1.PluginStateObject.Molecule.Model)).map(function (s) { return s.obj.data; });
-        var uniqueIds = new Set();
-        models.forEach(function (m) { return uniqueIds.add(m.entryId.toUpperCase()); });
-        var idString = set_1.SetUtils.toArray(uniqueIds).join('-');
-        return "".concat(idString || 'molstar-model');
-    };
-    GeometryControls.prototype.exportGeometry = function () {
-        var _this = this;
-        var task = mol_task_1.Task.create('Export Geometry', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-            var renderObjects, filename, boundingSphere, boundingBox, renderObjectExporter, i, il, blob, e_1;
-            var _a, _b, _c;
-            return (0, tslib_1.__generator)(this, function (_d) {
-                switch (_d.label) {
-                    case 0:
-                        _d.trys.push([0, 7, , 8]);
-                        renderObjects = (_a = this.plugin.canvas3d) === null || _a === void 0 ? void 0 : _a.getRenderObjects();
-                        filename = this.getFilename();
-                        boundingSphere = (_b = this.plugin.canvas3d) === null || _b === void 0 ? void 0 : _b.boundingSphereVisible;
-                        boundingBox = geometry_1.Box3D.fromSphere3D((0, geometry_1.Box3D)(), boundingSphere);
-                        renderObjectExporter = void 0;
-                        switch (this.behaviors.params.value.format) {
-                            case 'glb':
-                                renderObjectExporter = new glb_exporter_1.GlbExporter(boundingBox);
-                                break;
-                            case 'obj':
-                                renderObjectExporter = new obj_exporter_1.ObjExporter(filename, boundingBox);
-                                break;
-                            case 'stl':
-                                renderObjectExporter = new stl_exporter_1.StlExporter(boundingBox);
-                                break;
-                            case 'usdz':
-                                renderObjectExporter = new usdz_exporter_1.UsdzExporter(boundingBox, boundingSphere.radius);
-                                break;
-                            default: throw new Error('Unsupported format.');
-                        }
-                        i = 0, il = renderObjects.length;
-                        _d.label = 1;
-                    case 1:
-                        if (!(i < il)) return [3 /*break*/, 5];
-                        return [4 /*yield*/, ctx.update({ message: "Exporting object ".concat(i, "/").concat(il) })];
-                    case 2:
-                        _d.sent();
-                        return [4 /*yield*/, renderObjectExporter.add(renderObjects[i], (_c = this.plugin.canvas3d) === null || _c === void 0 ? void 0 : _c.webgl, ctx)];
-                    case 3:
-                        _d.sent();
-                        _d.label = 4;
-                    case 4:
-                        ++i;
-                        return [3 /*break*/, 1];
-                    case 5: return [4 /*yield*/, renderObjectExporter.getBlob(ctx)];
-                    case 6:
-                        blob = _d.sent();
-                        return [2 /*return*/, {
-                                blob: blob,
-                                filename: filename + '.' + renderObjectExporter.fileExtension
-                            }];
-                    case 7:
-                        e_1 = _d.sent();
-                        this.plugin.log.error('Error during geometry export');
-                        throw e_1;
-                    case 8: return [2 /*return*/];
-                }
-            });
-        }); });
-        return this.plugin.runTask(task, { useOverlay: true });
-    };
-    return GeometryControls;
-}(component_1.PluginComponent));
-exports.GeometryControls = GeometryControls;
-//# sourceMappingURL=controls.js.map