molstar 3.0.0-dev.7 → 3.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +194 -187
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +106 -102
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/app.d.ts +230 -0
- package/lib/apps/viewer/app.js +528 -0
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.d.ts +2 -224
- package/lib/apps/viewer/index.html +106 -102
- package/lib/apps/viewer/index.js +2 -507
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
- package/lib/commonjs/apps/viewer/app.d.ts +230 -0
- package/lib/commonjs/apps/viewer/app.js +534 -0
- package/lib/commonjs/apps/viewer/index.d.ts +2 -224
- package/lib/commonjs/apps/viewer/index.js +2 -510
- package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
- package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/model-export/export.d.ts +9 -0
- package/lib/commonjs/extensions/model-export/index.d.ts +7 -0
- package/lib/commonjs/extensions/model-export/ui.d.ts +11 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +5 -5
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +17 -9
- package/lib/commonjs/mol-canvas3d/canvas3d.js +32 -28
- package/lib/commonjs/mol-canvas3d/controls/trackball.d.ts +9 -4
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +14 -2
- package/lib/commonjs/mol-canvas3d/passes/draw.js +19 -18
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/image.js +3 -2
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +9 -2
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +14 -12
- package/lib/commonjs/mol-canvas3d/passes/pick.js +3 -3
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/base.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/color-data.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +6 -39
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +4 -4
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/commonjs/mol-gl/renderable/image.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
- package/lib/commonjs/mol-gl/renderer.js +15 -22
- package/lib/commonjs/mol-gl/scene.d.ts +1 -1
- package/lib/commonjs/mol-model/loci.d.ts +20 -20
- package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/coarse/hierarchy.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/coarse/hierarchy.js +24 -2
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -2
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +4 -4
- package/lib/commonjs/mol-model/volume/volume.d.ts +7 -0
- package/lib/commonjs/mol-model/volume/volume.js +18 -0
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +6 -6
- package/lib/commonjs/mol-model-formats/structure/basic/atomic.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/basic/coarse.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/entities.d.ts +2 -1
- package/lib/commonjs/mol-model-formats/structure/basic/properties.d.ts +6 -1
- package/lib/commonjs/mol-model-formats/structure/mol.d.ts +2 -1
- package/lib/commonjs/mol-model-formats/structure/mol2.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +18 -1
- package/lib/commonjs/mol-model-props/common/custom-property.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/common.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/common.js +16 -24
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +44 -18
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +38 -13
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
- package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +2 -2
- package/lib/commonjs/mol-plugin/animation-loop.d.ts +2 -0
- package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +4 -4
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +4 -4
- package/lib/commonjs/mol-plugin/commands.d.ts +8 -4
- package/lib/commonjs/mol-plugin/config.d.ts +1 -2
- package/lib/commonjs/mol-plugin/config.js +4 -25
- package/lib/commonjs/mol-plugin/layout.d.ts +4 -4
- package/lib/commonjs/mol-plugin/spec.d.ts +1 -1
- package/lib/commonjs/mol-plugin/spec.js +3 -1
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/actions/file.d.ts +3 -2
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +2 -1
- package/lib/commonjs/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/actions/volume.js +3 -3
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-rock.d.ts +16 -0
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-spin.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/animation/model.d.ts +4 -0
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +11 -11
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +179 -13
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +10 -10
- package/lib/commonjs/mol-plugin-state/formats/volume.js +1 -11
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +5 -5
- package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/manager/animation.d.ts +5 -1
- package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +7 -7
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +13 -13
- package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/selection.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +8 -26
- package/lib/commonjs/mol-repr/structure/params.d.ts +11 -29
- package/lib/commonjs/mol-repr/structure/registry.d.ts +26 -44
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +9 -9
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +7 -61
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +9 -9
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +9 -9
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +9 -9
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +11 -29
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +4 -40
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +12 -12
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +7 -7
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +5 -4
- package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +4 -3
- package/lib/commonjs/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
- package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
- package/lib/commonjs/mol-repr/visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +9 -63
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +12 -12
- package/lib/commonjs/mol-repr/volume/registry.d.ts +9 -27
- package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/volume/slice.d.ts +12 -12
- package/lib/commonjs/mol-state/tree/immutable.d.ts +18 -0
- package/lib/commonjs/mol-state/tree/transient.d.ts +3 -4
- package/lib/commonjs/mol-theme/color/atom-id.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/chain-id.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/element-index.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/element-symbol.d.ts +287 -1
- package/lib/commonjs/mol-theme/color/element-symbol.js +25 -15
- package/lib/commonjs/mol-theme/color/entity-id.d.ts +3 -3
- package/lib/commonjs/mol-theme/color/entity-id.js +29 -5
- package/lib/commonjs/mol-theme/color/entity-source.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/illustrative.d.ts +100 -29
- package/lib/commonjs/mol-theme/color/illustrative.js +26 -7
- package/lib/commonjs/mol-theme/color/model-index.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/molecule-type.d.ts +19 -1
- package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/operator-name.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/polymer-id.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/polymer-index.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/residue-name.d.ts +77 -1
- package/lib/commonjs/mol-theme/color/secondary-structure.d.ts +27 -1
- package/lib/commonjs/mol-theme/color/unit-index.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/volume-value.d.ts +17 -0
- package/lib/commonjs/mol-theme/color.d.ts +266 -25
- package/lib/commonjs/mol-theme/color.js +2 -0
- package/lib/commonjs/mol-util/clip.d.ts +1 -1
- package/lib/commonjs/mol-util/color/palette.d.ts +3 -3
- package/lib/commonjs/mol-util/color/params.d.ts +10 -0
- package/lib/examples/alpha-orbitals/index.html +61 -61
- package/lib/examples/alpha-orbitals/index.js +1 -1
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/basic-wrapper/index.js +7 -3
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/examples/proteopedia-wrapper/index.js +7 -1
- package/lib/extensions/anvil/representation.js +1 -1
- package/lib/extensions/geo-export/mesh-exporter.js +4 -4
- package/lib/extensions/model-export/export.d.ts +9 -0
- package/lib/extensions/model-export/export.js +125 -0
- package/lib/extensions/model-export/index.d.ts +7 -0
- package/lib/extensions/model-export/index.js +33 -0
- package/lib/extensions/model-export/ui.d.ts +11 -0
- package/lib/extensions/model-export/ui.js +74 -0
- package/lib/extensions/mp4-export/encoder.js +1 -1
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
- package/lib/extensions/rcsb/graphql/types.d.ts +2 -2
- package/lib/mol-canvas3d/canvas3d.d.ts +13 -5
- package/lib/mol-canvas3d/canvas3d.js +32 -28
- package/lib/mol-canvas3d/controls/trackball.d.ts +9 -4
- package/lib/mol-canvas3d/controls/trackball.js +51 -12
- package/lib/mol-canvas3d/helper/interaction-events.js +1 -1
- package/lib/mol-canvas3d/passes/draw.d.ts +14 -2
- package/lib/mol-canvas3d/passes/draw.js +19 -18
- package/lib/mol-canvas3d/passes/image.js +3 -2
- package/lib/mol-canvas3d/passes/marking.js +1 -1
- package/lib/mol-canvas3d/passes/multi-sample.d.ts +9 -2
- package/lib/mol-canvas3d/passes/multi-sample.js +14 -12
- package/lib/mol-canvas3d/passes/pick.js +2 -2
- package/lib/mol-geo/geometry/color-data.d.ts +1 -1
- package/lib/mol-geo/geometry/color-data.js +22 -0
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
- package/lib/mol-geo/geometry/cylinders/cylinders.js +1 -1
- package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +5 -38
- package/lib/mol-geo/geometry/direct-volume/direct-volume.js +22 -67
- package/lib/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
- package/lib/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
- package/lib/mol-geo/geometry/image/image.js +1 -1
- package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/mol-geo/geometry/marker-data.js +13 -5
- package/lib/mol-geo/geometry/mesh/mesh.js +1 -1
- package/lib/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/mol-geo/geometry/points/points.js +1 -1
- package/lib/mol-geo/geometry/size-data.js +5 -5
- package/lib/mol-geo/geometry/spheres/spheres.js +1 -1
- package/lib/mol-geo/geometry/text/text.js +1 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +1 -1
- package/lib/mol-gl/compute/histogram-pyramid/sum.js +2 -2
- package/lib/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
- package/lib/mol-gl/compute/marching-cubes/isosurface.js +10 -9
- package/lib/mol-gl/renderable/cylinders.d.ts +1 -0
- package/lib/mol-gl/renderable/direct-volume.d.ts +6 -10
- package/lib/mol-gl/renderable/direct-volume.js +1 -1
- package/lib/mol-gl/renderable/image.d.ts +1 -0
- package/lib/mol-gl/renderable/lines.d.ts +1 -0
- package/lib/mol-gl/renderable/mesh.d.ts +1 -0
- package/lib/mol-gl/renderable/points.d.ts +1 -0
- package/lib/mol-gl/renderable/schema.d.ts +1 -0
- package/lib/mol-gl/renderable/schema.js +2 -2
- package/lib/mol-gl/renderable/spheres.d.ts +1 -0
- package/lib/mol-gl/renderable/text.d.ts +1 -0
- package/lib/mol-gl/renderable/texture-mesh.d.ts +1 -1
- package/lib/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/mol-gl/renderer.d.ts +2 -2
- package/lib/mol-gl/renderer.js +15 -22
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
- package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
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- package/lib/commonjs/servers/model/server/api-web-multiple.js +0 -14
- package/lib/commonjs/servers/model/server/api-web.js +0 -191
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- package/lib/commonjs/servers/model/server/cache.js +0 -88
- package/lib/commonjs/servers/model/server/jobs.js +0 -88
- package/lib/commonjs/servers/model/server/query.js +0 -377
- package/lib/commonjs/servers/model/server/structure-wrapper.js +0 -354
- package/lib/commonjs/servers/model/server.js +0 -66
- package/lib/commonjs/servers/model/test.d.ts +0 -0
- package/lib/commonjs/servers/model/test.js +0 -82
- package/lib/commonjs/servers/model/utils/fetch-props-pdbe.d.ts +0 -6
- package/lib/commonjs/servers/model/utils/fetch-props-pdbe.js +0 -118
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- package/lib/commonjs/servers/model/utils/fetch-retry.js +0 -43
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- package/lib/commonjs/servers/model/utils/tar.js +0 -179
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- package/lib/commonjs/servers/model/version.js +0 -10
- package/lib/commonjs/servers/plugin-state/api-schema.d.ts +0 -107
- package/lib/commonjs/servers/plugin-state/api-schema.js +0 -135
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- package/lib/commonjs/servers/plugin-state/config.js +0 -25
- package/lib/commonjs/servers/plugin-state/index.d.ts +0 -6
- package/lib/commonjs/servers/plugin-state/index.js +0 -208
- package/lib/commonjs/servers/plugin-state/version.d.ts +0 -1
- package/lib/commonjs/servers/plugin-state/version.js +0 -5
- package/lib/commonjs/servers/volume/common/binary-schema.d.ts +0 -42
- package/lib/commonjs/servers/volume/common/binary-schema.js +0 -176
- package/lib/commonjs/servers/volume/common/data-format.d.ts +0 -53
- package/lib/commonjs/servers/volume/common/data-format.js +0 -70
- package/lib/commonjs/servers/volume/common/file.d.ts +0 -12
- package/lib/commonjs/servers/volume/common/file.js +0 -86
- package/lib/commonjs/servers/volume/config.d.ts +0 -47
- package/lib/commonjs/servers/volume/config.js +0 -197
- package/lib/commonjs/servers/volume/pack/data-model.js +0 -43
- package/lib/commonjs/servers/volume/pack/downsampling.js +0 -168
- package/lib/commonjs/servers/volume/pack/format/ccp4.js +0 -72
- package/lib/commonjs/servers/volume/pack/format/dsn6.js +0 -76
- package/lib/commonjs/servers/volume/pack/format.js +0 -82
- package/lib/commonjs/servers/volume/pack/main.js +0 -186
- package/lib/commonjs/servers/volume/pack/sampling.js +0 -272
- package/lib/commonjs/servers/volume/pack/version.d.ts +0 -1
- package/lib/commonjs/servers/volume/pack/version.js +0 -5
- package/lib/commonjs/servers/volume/pack/writer.js +0 -86
- package/lib/commonjs/servers/volume/pack.js +0 -62
- package/lib/commonjs/servers/volume/query.d.ts +0 -10
- package/lib/commonjs/servers/volume/query.js +0 -79
- package/lib/commonjs/servers/volume/server/algebra/box.d.ts +0 -32
- package/lib/commonjs/servers/volume/server/algebra/box.js +0 -123
- package/lib/commonjs/servers/volume/server/algebra/coordinate.d.ts +0 -65
- package/lib/commonjs/servers/volume/server/algebra/coordinate.js +0 -137
- package/lib/commonjs/servers/volume/server/api.d.ts +0 -20
- package/lib/commonjs/servers/volume/server/api.js +0 -115
- package/lib/commonjs/servers/volume/server/local-api.d.ts +0 -36
- package/lib/commonjs/servers/volume/server/local-api.js +0 -145
- package/lib/commonjs/servers/volume/server/query/compose.d.ts +0 -9
- package/lib/commonjs/servers/volume/server/query/compose.js +0 -124
- package/lib/commonjs/servers/volume/server/query/data-model.d.ts +0 -91
- package/lib/commonjs/servers/volume/server/query/data-model.js +0 -10
- package/lib/commonjs/servers/volume/server/query/encode.d.ts +0 -9
- package/lib/commonjs/servers/volume/server/query/encode.js +0 -162
- package/lib/commonjs/servers/volume/server/query/execute.d.ts +0 -9
- package/lib/commonjs/servers/volume/server/query/execute.js +0 -254
- package/lib/commonjs/servers/volume/server/query/identify.d.ts +0 -11
- package/lib/commonjs/servers/volume/server/query/identify.js +0 -112
- package/lib/commonjs/servers/volume/server/state.d.ts +0 -12
- package/lib/commonjs/servers/volume/server/state.js +0 -16
- package/lib/commonjs/servers/volume/server/version.d.ts +0 -2
- package/lib/commonjs/servers/volume/server/version.js +0 -6
- package/lib/commonjs/servers/volume/server/web-api.d.ts +0 -10
- package/lib/commonjs/servers/volume/server/web-api.js +0 -226
- package/lib/commonjs/servers/volume/server/web-schema.d.ts +0 -245
- package/lib/commonjs/servers/volume/server/web-schema.js +0 -263
- package/lib/commonjs/servers/volume/server.d.ts +0 -10
- package/lib/commonjs/servers/volume/server.js +0 -59
- package/lib/mol-util/float-packing.d.ts +0 -15
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if
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var
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if (
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var
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var
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var
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100
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101
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102
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-
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1
|
+
<!DOCTYPE html>
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2
|
+
<html lang="en">
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3
|
+
<head>
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4
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+
<meta charset="utf-8" />
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5
|
+
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
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6
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+
<link rel="icon" href="./favicon.ico" type="image/x-icon">
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7
|
+
<title>Mol* Viewer</title>
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8
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+
<style>
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9
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+
* {
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10
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+
margin: 0;
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11
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padding: 0;
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12
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box-sizing: border-box;
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}
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html, body {
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+
width: 100%;
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height: 100%;
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overflow: hidden;
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}
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+
hr {
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margin: 10px;
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+
}
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22
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+
h1, h2, h3, h4, h5 {
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23
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+
margin-top: 5px;
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24
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+
margin-bottom: 3px;
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25
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+
}
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+
button {
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27
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+
padding: 2px;
|
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28
|
+
}
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29
|
+
#app {
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30
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+
position: absolute;
|
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|
+
left: 100px;
|
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|
+
top: 100px;
|
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33
|
+
width: 800px;
|
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34
|
+
height: 600px;
|
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35
|
+
}
|
|
36
|
+
</style>
|
|
37
|
+
<link rel="stylesheet" type="text/css" href="molstar.css" />
|
|
38
|
+
</head>
|
|
39
|
+
<body>
|
|
40
|
+
<div id="app"></div>
|
|
41
|
+
<script type="text/javascript" src="./molstar.js"></script>
|
|
42
|
+
<script type="text/javascript">
|
|
43
|
+
function getParam(name, regex) {
|
|
44
|
+
var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
|
|
45
|
+
return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
|
|
46
|
+
}
|
|
47
|
+
|
|
48
|
+
var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
|
|
49
|
+
if (debugMode) molstar.setDebugMode(debugMode, debugMode);
|
|
50
|
+
|
|
51
|
+
var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
|
|
52
|
+
var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
|
|
53
|
+
var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
|
|
54
|
+
var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
|
|
55
|
+
var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
|
|
56
|
+
var pixelScale = getParam('pixel-scale', '[^&]+').trim();
|
|
57
|
+
var pickScale = getParam('pick-scale', '[^&]+').trim();
|
|
58
|
+
var pickPadding = getParam('pick-padding', '[^&]+').trim();
|
|
59
|
+
var disableWboit = getParam('disable-wboit', '[^&]+').trim() === '1';
|
|
60
|
+
var preferWebgl1 = getParam('prefer-webgl1', '[^&]+').trim() === '1' || void 0;
|
|
61
|
+
|
|
62
|
+
molstar.Viewer.create('app', {
|
|
63
|
+
layoutShowControls: !hideControls,
|
|
64
|
+
viewportShowExpand: false,
|
|
65
|
+
collapseLeftPanel: collapseLeftPanel,
|
|
66
|
+
pdbProvider: pdbProvider || 'pdbe',
|
|
67
|
+
emdbProvider: emdbProvider || 'pdbe',
|
|
68
|
+
volumeStreamingServer: (mapProvider || 'pdbe') === 'rcsb'
|
|
69
|
+
? 'https://maps.rcsb.org'
|
|
70
|
+
: 'https://www.ebi.ac.uk/pdbe/densities',
|
|
71
|
+
pixelScale: parseFloat(pixelScale) || 1,
|
|
72
|
+
pickScale: parseFloat(pickScale) || 0.25,
|
|
73
|
+
pickPadding: isNaN(parseFloat(pickPadding)) ? 1 : parseFloat(pickPadding),
|
|
74
|
+
enableWboit: disableWboit ? true : void 0, // use default value if disable-wboit is not set
|
|
75
|
+
preferWebgl1: preferWebgl1,
|
|
76
|
+
}).then(viewer => {
|
|
77
|
+
var snapshotId = getParam('snapshot-id', '[^&]+').trim();
|
|
78
|
+
if (snapshotId) viewer.setRemoteSnapshot(snapshotId);
|
|
79
|
+
|
|
80
|
+
var snapshotUrl = getParam('snapshot-url', '[^&]+').trim();
|
|
81
|
+
var snapshotUrlType = getParam('snapshot-url-type', '[^&]+').toLowerCase().trim() || 'molj';
|
|
82
|
+
if (snapshotUrl && snapshotUrlType) viewer.loadSnapshotFromUrl(snapshotUrl, snapshotUrlType);
|
|
83
|
+
|
|
84
|
+
var structureUrl = getParam('structure-url', '[^&]+').trim();
|
|
85
|
+
var structureUrlFormat = getParam('structure-url-format', '[a-z]+').toLowerCase().trim();
|
|
86
|
+
var structureUrlIsBinary = getParam('structure-url-is-binary', '[^&]+').trim() === '1';
|
|
87
|
+
if (structureUrl) viewer.loadStructureFromUrl(structureUrl, structureUrlFormat, structureUrlIsBinary);
|
|
88
|
+
|
|
89
|
+
var pdb = getParam('pdb', '[^&]+').trim();
|
|
90
|
+
if (pdb) viewer.loadPdb(pdb);
|
|
91
|
+
|
|
92
|
+
var pdbDev = getParam('pdb-dev', '[^&]+').trim();
|
|
93
|
+
if (pdbDev) viewer.loadPdbDev(pdbDev);
|
|
94
|
+
|
|
95
|
+
var emdb = getParam('emdb', '[^&]+').trim();
|
|
96
|
+
if (emdb) viewer.loadEmdb(emdb);
|
|
97
|
+
|
|
98
|
+
var afdb = getParam('afdb', '[^&]+').trim();
|
|
99
|
+
if (afdb) viewer.loadAlphaFoldDb(afdb);
|
|
100
|
+
|
|
101
|
+
var modelArchive = getParam('model-archive', '[^&]+').trim();
|
|
102
|
+
if (modelArchive) viewer.loadModelArchive(modelArchive);
|
|
103
|
+
});
|
|
104
|
+
</script>
|
|
105
|
+
<!-- __MOLSTAR_ANALYTICS__ -->
|
|
106
|
+
</body>
|
|
103
107
|
</html>
|