molstar 3.0.0-dev.6 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +7 -0
- package/build/viewer/index.html +4 -0
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/viewer/app.d.ts +230 -0
- package/lib/apps/viewer/app.js +525 -0
- package/lib/apps/viewer/index.d.ts +2 -224
- package/lib/apps/viewer/index.html +4 -0
- package/lib/apps/viewer/index.js +2 -507
- package/lib/commonjs/apps/viewer/app.d.ts +230 -0
- package/lib/commonjs/apps/viewer/app.js +531 -0
- package/lib/commonjs/apps/viewer/index.d.ts +2 -224
- package/lib/commonjs/apps/viewer/index.js +2 -510
- package/lib/commonjs/examples/alpha-orbitals/index.js +1 -1
- package/lib/commonjs/examples/basic-wrapper/index.js +7 -3
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +7 -1
- package/lib/commonjs/extensions/anvil/behavior.d.ts +4 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +50 -0
- package/lib/commonjs/extensions/anvil/representation.js +1 -1
- package/lib/commonjs/extensions/cellpack/representation.d.ts +10 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js +4 -4
- package/lib/commonjs/extensions/model-export/export.d.ts +9 -0
- package/lib/commonjs/extensions/model-export/export.js +129 -0
- package/lib/commonjs/extensions/model-export/index.d.ts +7 -0
- package/lib/commonjs/extensions/model-export/index.js +36 -0
- package/lib/commonjs/extensions/model-export/ui.d.ts +11 -0
- package/lib/commonjs/extensions/model-export/ui.js +77 -0
- package/lib/commonjs/extensions/mp4-export/encoder.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +50 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +15 -13
- package/lib/commonjs/mol-canvas3d/canvas3d.js +34 -29
- package/lib/commonjs/mol-canvas3d/controls/trackball.d.ts +9 -4
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +50 -11
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +13 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +16 -15
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/image.js +3 -2
- package/lib/commonjs/mol-canvas3d/passes/marking.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +9 -2
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +14 -12
- package/lib/commonjs/mol-canvas3d/passes/pick.js +12 -12
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +3 -3
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +18 -0
- package/lib/commonjs/mol-geo/geometry/base.js +18 -1
- package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
- package/lib/commonjs/mol-geo/geometry/color-data.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/color-data.js +22 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +15 -38
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +21 -66
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/image/image.js +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +13 -9
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +5 -5
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +2 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -9
- package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
- package/lib/commonjs/mol-gl/render-object.js +10 -10
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +15 -14
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
- package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +39 -33
- package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/points.js +2 -2
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
- package/lib/commonjs/mol-gl/renderable/schema.js +4 -10
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
- package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/text.js +2 -2
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +11 -6
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
- package/lib/commonjs/mol-gl/renderer.js +23 -92
- package/lib/commonjs/mol-gl/scene.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +7 -5
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
- package/lib/commonjs/mol-gl/shader-code.js +43 -14
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
- package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
- package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/commonjs/mol-io/reader/mol/parser.d.ts +23 -1
- package/lib/commonjs/mol-io/reader/mol/parser.js +116 -4
- package/lib/commonjs/mol-io/reader/mol2/parser.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/mol2/parser.js +33 -3
- package/lib/commonjs/mol-io/reader/mol2/schema.d.ts +12 -1
- package/lib/commonjs/mol-io/reader/mol2/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.d.ts +6 -0
- package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js +9 -0
- package/lib/commonjs/mol-io/reader/sdf/parser.d.ts +3 -1
- package/lib/commonjs/mol-io/reader/sdf/parser.js +11 -2
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +9 -2
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +2 -2
- package/lib/commonjs/mol-math/geometry/symmetry-operator.d.ts +1 -1
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +10 -4
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.js +8 -5
- package/lib/commonjs/mol-model/structure/model/properties/common.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/stats.js +8 -0
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +1 -0
- package/lib/commonjs/mol-model/structure/structure/properties.js +2 -1
- package/lib/commonjs/mol-model/structure/structure/symmetry.js +1 -3
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/common.d.ts +2 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/common.js +11 -2
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +20 -10
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +21 -11
- package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.js +10 -5
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +20 -0
- package/lib/commonjs/mol-model-formats/structure/basic/atomic.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +6 -6
- package/lib/commonjs/mol-model-formats/structure/basic/coarse.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/coarse.js +3 -3
- package/lib/commonjs/mol-model-formats/structure/basic/entities.d.ts +2 -1
- package/lib/commonjs/mol-model-formats/structure/basic/entities.js +28 -24
- package/lib/commonjs/mol-model-formats/structure/basic/parser.js +17 -8
- package/lib/commonjs/mol-model-formats/structure/basic/properties.d.ts +6 -1
- package/lib/commonjs/mol-model-formats/structure/basic/properties.js +12 -22
- package/lib/commonjs/mol-model-formats/structure/mol.d.ts +2 -1
- package/lib/commonjs/mol-model-formats/structure/mol.js +19 -5
- package/lib/commonjs/mol-model-formats/structure/mol2.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/mol2.js +37 -7
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +18 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +18 -5
- package/lib/commonjs/mol-model-props/common/custom-property.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +11 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +25 -10
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +30 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
- package/lib/commonjs/mol-model-props/sequence/best-database-mapping.js +15 -15
- package/lib/commonjs/mol-plugin/animation-loop.d.ts +2 -0
- package/lib/commonjs/mol-plugin/animation-loop.js +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +4 -6
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
- package/lib/commonjs/mol-plugin/commands.d.ts +7 -6
- package/lib/commonjs/mol-plugin/config.d.ts +1 -2
- package/lib/commonjs/mol-plugin/config.js +4 -25
- package/lib/commonjs/mol-plugin/features.d.ts +9 -0
- package/lib/commonjs/mol-plugin/features.js +38 -0
- package/lib/commonjs/mol-plugin/spec.d.ts +1 -1
- package/lib/commonjs/mol-plugin/spec.js +4 -1
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +12 -0
- package/lib/commonjs/mol-plugin-state/actions/file.d.ts +3 -2
- package/lib/commonjs/mol-plugin-state/actions/file.js +67 -31
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +1 -0
- package/lib/commonjs/mol-plugin-state/actions/structure.js +41 -8
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-rock.d.ts +16 -0
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-rock.js +62 -0
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-spin.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-spin.js +9 -8
- package/lib/commonjs/mol-plugin-state/animation/model.d.ts +4 -0
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +149 -5
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +74 -2
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
- package/lib/commonjs/mol-plugin-state/manager/animation.d.ts +5 -1
- package/lib/commonjs/mol-plugin-state/manager/animation.js +5 -5
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +13 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +3 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +32 -0
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/commonjs/mol-plugin-ui/structure/superposition.js +2 -2
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +6 -14
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/complex-representation.js +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +61 -19
- package/lib/commonjs/mol-repr/structure/params.d.ts +81 -19
- package/lib/commonjs/mol-repr/structure/registry.d.ts +141 -19
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +2 -7
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/label.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +30 -0
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- package/lib/mol-plugin-state/actions/structure.js +41 -8
- package/lib/mol-plugin-state/animation/built-in/camera-rock.d.ts +16 -0
- package/lib/mol-plugin-state/animation/built-in/camera-rock.js +59 -0
- package/lib/mol-plugin-state/animation/built-in/camera-spin.d.ts +1 -1
- package/lib/mol-plugin-state/animation/built-in/camera-spin.js +9 -8
- package/lib/mol-plugin-state/animation/model.d.ts +4 -0
- package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +6 -6
- package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -1
- package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +149 -5
- package/lib/mol-plugin-state/builder/structure/representation-preset.js +74 -2
- package/lib/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
- package/lib/mol-plugin-state/helpers/structure-clipping.js +1 -1
- package/lib/mol-plugin-state/manager/animation.d.ts +5 -1
- package/lib/mol-plugin-state/manager/animation.js +5 -5
- package/lib/mol-plugin-state/manager/structure/component.d.ts +13 -1
- package/lib/mol-plugin-state/manager/structure/component.js +13 -8
- package/lib/mol-plugin-state/manager/structure/selection.js +3 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +32 -0
- package/lib/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/mol-plugin-ui/structure/superposition.js +2 -2
- package/lib/mol-plugin-ui/viewport/simple-settings.d.ts +1 -1
- package/lib/mol-plugin-ui/viewport/simple-settings.js +6 -14
- package/lib/mol-repr/shape/loci/angle.d.ts +10 -0
- package/lib/mol-repr/shape/loci/common.d.ts +10 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +10 -0
- package/lib/mol-repr/shape/loci/distance.d.ts +10 -0
- package/lib/mol-repr/shape/loci/label.d.ts +10 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +10 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +10 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +10 -0
- package/lib/mol-repr/structure/complex-representation.js +1 -1
- package/lib/mol-repr/structure/complex-visual.d.ts +61 -19
- package/lib/mol-repr/structure/params.d.ts +81 -19
- package/lib/mol-repr/structure/registry.d.ts +141 -19
- package/lib/mol-repr/structure/representation/backbone.d.ts +30 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +30 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.js +1 -1
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
- package/lib/mol-repr/structure/representation/gaussian-volume.js +2 -7
- package/lib/mol-repr/structure/representation/label.d.ts +30 -0
- package/lib/mol-repr/structure/representation/label.js +1 -1
- package/lib/mol-repr/structure/representation/line.d.ts +30 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
- package/lib/mol-repr/structure/representation/molecular-surface.js +1 -1
- package/lib/mol-repr/structure/representation/orientation.d.ts +30 -0
- package/lib/mol-repr/structure/representation/point.d.ts +30 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +30 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +30 -0
- package/lib/mol-repr/structure/units-representation.js +1 -1
- package/lib/mol-repr/structure/units-visual.d.ts +81 -19
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +11 -1
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.js +8 -4
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +11 -1
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +10 -6
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +11 -1
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +8 -4
- package/lib/mol-repr/structure/visual/element-cross.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-point.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +20 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -38
- package/lib/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
- package/lib/mol-repr/structure/visual/label-text.d.ts +10 -0
- package/lib/mol-repr/structure/visual/label-text.js +1 -2
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/util/common.d.ts +3 -2
- package/lib/mol-repr/structure/visual/util/common.js +2 -5
- package/lib/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
- package/lib/mol-repr/structure/visual/util/gaussian.js +12 -12
- package/lib/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
- package/lib/mol-repr/structure/visual/util/molecular-surface.js +4 -4
- package/lib/mol-repr/visual.d.ts +1 -1
- package/lib/mol-repr/visual.js +13 -8
- package/lib/mol-repr/volume/direct-volume.d.ts +33 -57
- package/lib/mol-repr/volume/direct-volume.js +8 -12
- package/lib/mol-repr/volume/isosurface.d.ts +60 -0
- package/lib/mol-repr/volume/isosurface.js +11 -2
- package/lib/mol-repr/volume/registry.d.ts +31 -19
- package/lib/mol-repr/volume/representation.d.ts +10 -0
- package/lib/mol-repr/volume/slice.d.ts +30 -0
- package/lib/mol-repr/volume/slice.js +2 -2
- package/lib/mol-repr/volume/util.js +2 -2
- package/lib/mol-state/tree/immutable.d.ts +18 -0
- package/lib/mol-state/tree/transient.d.ts +3 -4
- package/lib/mol-theme/clipping.d.ts +7 -15
- package/lib/mol-theme/clipping.js +5 -12
- package/lib/mol-theme/color/element-symbol.d.ts +243 -1
- package/lib/mol-theme/color/element-symbol.js +10 -5
- package/lib/mol-theme/color/entity-id.d.ts +1 -1
- package/lib/mol-theme/color/entity-id.js +26 -5
- package/lib/mol-theme/color/illustrative.d.ts +100 -29
- package/lib/mol-theme/color/illustrative.js +26 -7
- package/lib/mol-theme/color/molecule-type.d.ts +19 -1
- package/lib/mol-theme/color/molecule-type.js +10 -5
- package/lib/mol-theme/color/residue-name.d.ts +77 -1
- package/lib/mol-theme/color/residue-name.js +10 -5
- package/lib/mol-theme/color/secondary-structure.d.ts +27 -1
- package/lib/mol-theme/color/secondary-structure.js +10 -5
- package/lib/mol-theme/color/volume-value.d.ts +17 -0
- package/lib/mol-theme/color/volume-value.js +52 -0
- package/lib/mol-theme/color.d.ts +233 -14
- package/lib/mol-theme/color.js +2 -0
- package/lib/mol-util/clip.d.ts +49 -0
- package/lib/mol-util/clip.js +93 -0
- package/lib/mol-util/color/color.d.ts +1 -1
- package/lib/mol-util/color/color.js +1 -1
- package/lib/mol-util/color/params.d.ts +10 -0
- package/lib/mol-util/color/params.js +15 -0
- package/lib/mol-util/number-packing.d.ts +11 -0
- package/lib/mol-util/{float-packing.js → number-packing.js} +7 -14
- package/package.json +36 -35
- package/lib/commonjs/mol-util/float-packing.d.ts +0 -15
- package/lib/mol-util/float-packing.d.ts +0 -15
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requestDraw();
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/**
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* Copyright (c) 2018-
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* Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
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*
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@@ -28,8 +28,12 @@ export declare const TrackballControlsParams: {
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rotateSpeed: PD.Numeric;
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animate: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
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speed: number;
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}>, "spin"> | PD.NamedParams<PD.Normalize<{
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speed: number;
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angle: number;
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}>, "rock">>;
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staticMoving: PD.BooleanParam;
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dynamicDampingFactor: PD.Numeric;
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minDistance: PD.Numeric;
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@@ -61,7 +65,8 @@ export declare const TrackballControlsParams: {
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export declare type TrackballControlsProps = PD.Values<typeof TrackballControlsParams>;
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interface TrackballControls {
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viewport: Viewport;
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readonly viewport: Viewport;
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readonly isAnimating: boolean;
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"use strict";
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/**
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* Copyright (c) 2018-
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* Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
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|
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@@ -36,8 +36,16 @@ exports.TrackballControlsParams = {
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rotateSpeed: param_definition_1.ParamDefinition.Numeric(5.0, { min: 1, max: 10, step: 1 }),
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zoomSpeed: param_definition_1.ParamDefinition.Numeric(7.0, { min: 1, max: 15, step: 1 }),
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panSpeed: param_definition_1.ParamDefinition.Numeric(1.0, { min: 0.1, max: 5, step: 0.1 }),
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-
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-
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+
animate: param_definition_1.ParamDefinition.MappedStatic('off', {
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off: param_definition_1.ParamDefinition.EmptyGroup(),
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spin: param_definition_1.ParamDefinition.Group({
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speed: param_definition_1.ParamDefinition.Numeric(1, { min: -20, max: 20, step: 1 }),
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+
}, { description: 'Spin the 3D scene around the x-axis in view space' }),
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rock: param_definition_1.ParamDefinition.Group({
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speed: param_definition_1.ParamDefinition.Numeric(0.3, { min: -5, max: 5, step: 0.1 }),
|
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+
angle: param_definition_1.ParamDefinition.Numeric(10, { min: 0, max: 90, step: 1 }, { description: 'How many degrees to rotate in each direction.' }),
|
|
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|
+
}, { description: 'Rock the 3D scene around the x-axis in view space' })
|
|
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|
+
}),
|
|
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staticMoving: param_definition_1.ParamDefinition.Boolean(true, { isHidden: true }),
|
|
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|
dynamicDampingFactor: param_definition_1.ParamDefinition.Numeric(0.2, {}, { isHidden: true }),
|
|
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|
minDistance: param_definition_1.ParamDefinition.Numeric(0.01, {}, { isHidden: true }),
|
|
@@ -101,6 +109,10 @@ var TrackballControls;
|
|
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return linear_algebra_1.Vec2.set(mouseOnCircleVec2, (pageX - viewport.width * 0.5 - viewport.x) / (viewport.width * 0.5), (viewport.height + 2 * (viewport.y - pageY)) / viewport.width // screen.width intentional
|
|
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|
);
|
|
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|
}
|
|
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|
+
function getRotateFactor() {
|
|
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|
+
var aspectRatio = input.width / input.height;
|
|
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|
+
return p.rotateSpeed * input.pixelRatio * aspectRatio;
|
|
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|
+
}
|
|
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|
var rotAxis = (0, linear_algebra_1.Vec3)();
|
|
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|
var rotQuat = (0, linear_algebra_1.Quat)();
|
|
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|
var rotEyeDir = (0, linear_algebra_1.Vec3)();
|
|
@@ -111,8 +123,7 @@ var TrackballControls;
|
|
|
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|
var dx = _rotCurr[0] - _rotPrev[0];
|
|
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|
var dy = _rotCurr[1] - _rotPrev[1];
|
|
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|
linear_algebra_1.Vec3.set(rotMoveDir, dx, dy, 0);
|
|
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|
-
var
|
|
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|
-
var angle = linear_algebra_1.Vec3.magnitude(rotMoveDir) * p.rotateSpeed * input.pixelRatio * aspectRatio;
|
|
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|
+
var angle = linear_algebra_1.Vec3.magnitude(rotMoveDir) * getRotateFactor();
|
|
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|
if (angle) {
|
|
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|
linear_algebra_1.Vec3.sub(_eye, camera.position, camera.target);
|
|
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|
linear_algebra_1.Vec3.normalize(rotEyeDir, _eye);
|
|
@@ -238,8 +249,12 @@ var TrackballControls;
|
|
|
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|
function update(t) {
|
|
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|
if (lastUpdated === t)
|
|
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|
return;
|
|
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|
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if (
|
|
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|
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|
|
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|
+
if (lastUpdated > 0) {
|
|
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|
+
if (p.animate.name === 'spin')
|
|
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|
+
spin(t - lastUpdated);
|
|
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|
+
else if (p.animate.name === 'rock')
|
|
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|
+
rock(t - lastUpdated);
|
|
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|
+
}
|
|
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258
|
linear_algebra_1.Vec3.sub(_eye, camera.position, camera.target);
|
|
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259
|
rotateCamera();
|
|
245
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|
zRotateCamera();
|
|
@@ -270,6 +285,7 @@ var TrackballControls;
|
|
|
270
285
|
if (!isStart && !_isInteracting)
|
|
271
286
|
return;
|
|
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287
|
_isInteracting = true;
|
|
288
|
+
resetRock(); // start rocking from the center after interactions
|
|
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|
var dragRotate = binding_1.Binding.match(p.bindings.dragRotate, buttons, modifiers);
|
|
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|
var dragRotateZ = binding_1.Binding.match(p.bindings.dragRotateZ, buttons, modifiers);
|
|
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|
var dragPan = binding_1.Binding.match(p.bindings.dragPan, buttons, modifiers);
|
|
@@ -358,12 +374,30 @@ var TrackballControls;
|
|
|
358
374
|
}
|
|
359
375
|
var _spinSpeed = linear_algebra_1.Vec2.create(0.005, 0);
|
|
360
376
|
function spin(deltaT) {
|
|
361
|
-
if (p.
|
|
377
|
+
if (p.animate.name !== 'spin' || p.animate.params.speed === 0 || _isInteracting)
|
|
362
378
|
return;
|
|
363
|
-
var frameSpeed =
|
|
379
|
+
var frameSpeed = p.animate.params.speed / 1000;
|
|
364
380
|
_spinSpeed[0] = 60 * Math.min(Math.abs(deltaT), 1000 / 8) / 1000 * frameSpeed;
|
|
365
|
-
|
|
366
|
-
|
|
381
|
+
linear_algebra_1.Vec2.add(_rotCurr, _rotPrev, _spinSpeed);
|
|
382
|
+
}
|
|
383
|
+
var _rockPhase = 0;
|
|
384
|
+
var _rockSpeed = linear_algebra_1.Vec2.create(0.005, 0);
|
|
385
|
+
function rock(deltaT) {
|
|
386
|
+
if (p.animate.name !== 'rock' || p.animate.params.speed === 0 || _isInteracting)
|
|
387
|
+
return;
|
|
388
|
+
var dt = deltaT / 1000 * p.animate.params.speed;
|
|
389
|
+
var maxAngle = (0, misc_1.degToRad)(p.animate.params.angle) / getRotateFactor();
|
|
390
|
+
var angleA = Math.sin(_rockPhase * Math.PI * 2) * maxAngle;
|
|
391
|
+
var angleB = Math.sin((_rockPhase + dt) * Math.PI * 2) * maxAngle;
|
|
392
|
+
_rockSpeed[0] = angleB - angleA;
|
|
393
|
+
linear_algebra_1.Vec2.add(_rotCurr, _rotPrev, _rockSpeed);
|
|
394
|
+
_rockPhase += dt;
|
|
395
|
+
if (_rockPhase >= 1) {
|
|
396
|
+
_rockPhase = 0;
|
|
397
|
+
}
|
|
398
|
+
}
|
|
399
|
+
function resetRock() {
|
|
400
|
+
_rockPhase = 0;
|
|
367
401
|
}
|
|
368
402
|
function start(t) {
|
|
369
403
|
lastUpdated = -1;
|
|
@@ -371,8 +405,13 @@ var TrackballControls;
|
|
|
371
405
|
}
|
|
372
406
|
return {
|
|
373
407
|
viewport: viewport,
|
|
408
|
+
get isAnimating() { return p.animate.name !== 'off'; },
|
|
374
409
|
get props() { return p; },
|
|
375
410
|
setProps: function (props) {
|
|
411
|
+
var _a;
|
|
412
|
+
if (((_a = props.animate) === null || _a === void 0 ? void 0 : _a.name) === 'rock' && p.animate.name !== 'rock') {
|
|
413
|
+
resetRock(); // start rocking from the center
|
|
414
|
+
}
|
|
376
415
|
Object.assign(p, props);
|
|
377
416
|
},
|
|
378
417
|
start: start,
|
|
@@ -18,6 +18,7 @@ var names_1 = require("../../mol-util/color/names");
|
|
|
18
18
|
var sphere_2 = require("../../mol-geo/primitive/sphere");
|
|
19
19
|
var mol_util_1 = require("../../mol-util");
|
|
20
20
|
var geometry_2 = require("../../mol-geo/geometry/geometry");
|
|
21
|
+
var render_item_1 = require("../../mol-gl/webgl/render-item");
|
|
21
22
|
exports.DebugHelperParams = {
|
|
22
23
|
sceneBoundingSpheres: param_definition_1.ParamDefinition.Boolean(false, { description: 'Show full scene bounding spheres.' }),
|
|
23
24
|
visibleSceneBoundingSpheres: param_definition_1.ParamDefinition.Boolean(false, { description: 'Show visible scene bounding spheres.' }),
|
|
@@ -28,7 +29,7 @@ var BoundingSphereHelper = /** @class */ (function () {
|
|
|
28
29
|
function BoundingSphereHelper(ctx, parent, props) {
|
|
29
30
|
this.objectsData = new Map();
|
|
30
31
|
this.instancesData = new Map();
|
|
31
|
-
this.scene = scene_1.Scene.create(ctx);
|
|
32
|
+
this.scene = scene_1.Scene.create(ctx, render_item_1.GraphicsRenderVariantsBlended);
|
|
32
33
|
this.parent = parent;
|
|
33
34
|
this._props = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.DebugHelperParams)), props);
|
|
34
35
|
}
|
|
@@ -151,6 +152,6 @@ var objectMaterialId = (0, render_object_1.getNextMaterialId)();
|
|
|
151
152
|
var instanceMaterialId = (0, render_object_1.getNextMaterialId)();
|
|
152
153
|
function createBoundingSphereRenderObject(mesh, color, materialId, transform) {
|
|
153
154
|
var values = mesh_1.Mesh.Utils.createValuesSimple(mesh, { alpha: 0.1, doubleSided: false }, color, 1, transform);
|
|
154
|
-
return (0, render_object_1.createRenderObject)('mesh', values, { disposed: false, visible: true, alphaFactor: 1, pickable: false, colorOnly: false, opaque: false, writeDepth: false
|
|
155
|
+
return (0, render_object_1.createRenderObject)('mesh', values, { disposed: false, visible: true, alphaFactor: 1, pickable: false, colorOnly: false, opaque: false, writeDepth: false }, materialId);
|
|
155
156
|
}
|
|
156
157
|
//# sourceMappingURL=bounding-sphere-helper.js.map
|
|
@@ -14,6 +14,7 @@ var sphere_1 = require("../../mol-geo/geometry/mesh/builder/sphere");
|
|
|
14
14
|
var mesh_1 = require("../../mol-geo/geometry/mesh/mesh");
|
|
15
15
|
var mesh_builder_1 = require("../../mol-geo/geometry/mesh/mesh-builder");
|
|
16
16
|
var scene_1 = require("../../mol-gl/scene");
|
|
17
|
+
var render_item_1 = require("../../mol-gl/webgl/render-item");
|
|
17
18
|
var geometry_1 = require("../../mol-math/geometry");
|
|
18
19
|
var linear_algebra_1 = require("../../mol-math/linear-algebra");
|
|
19
20
|
var loci_1 = require("../../mol-model/loci");
|
|
@@ -55,7 +56,7 @@ var CameraHelper = /** @class */ (function () {
|
|
|
55
56
|
}
|
|
56
57
|
return changed;
|
|
57
58
|
};
|
|
58
|
-
this.scene = scene_1.Scene.create(webgl);
|
|
59
|
+
this.scene = scene_1.Scene.create(webgl, render_item_1.GraphicsRenderVariantsBlended);
|
|
59
60
|
this.camera = new camera_1.Camera();
|
|
60
61
|
linear_algebra_1.Vec3.set(this.camera.up, 0, 1, 0);
|
|
61
62
|
linear_algebra_1.Vec3.set(this.camera.target, 0, 0, 0);
|
|
@@ -70,7 +71,6 @@ var CameraHelper = /** @class */ (function () {
|
|
|
70
71
|
_this.scene.clear();
|
|
71
72
|
var params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props.axes.params), { scale: props.axes.params.scale * _this.webgl.pixelRatio });
|
|
72
73
|
_this.renderObject = createAxesRenderObject(params);
|
|
73
|
-
_this.renderObject.state.noClip = true;
|
|
74
74
|
_this.scene.add(_this.renderObject);
|
|
75
75
|
_this.scene.commit();
|
|
76
76
|
linear_algebra_1.Vec3.set(_this.camera.position, 0, 0, params.scale * 200);
|
|
@@ -23,6 +23,7 @@ var loci_1 = require("../../mol-model/loci");
|
|
|
23
23
|
var marker_action_1 = require("../../mol-util/marker-action");
|
|
24
24
|
var visual_1 = require("../../mol-repr/visual");
|
|
25
25
|
var int_1 = require("../../mol-data/int");
|
|
26
|
+
var render_item_1 = require("../../mol-gl/webgl/render-item");
|
|
26
27
|
var HandleParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { alpha: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params.alpha), { defaultValue: 1 }), ignoreLight: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params.ignoreLight), { defaultValue: true }), colorX: param_definition_1.ParamDefinition.Color(names_1.ColorNames.red, { isEssential: true }), colorY: param_definition_1.ParamDefinition.Color(names_1.ColorNames.green, { isEssential: true }), colorZ: param_definition_1.ParamDefinition.Color(names_1.ColorNames.blue, { isEssential: true }), scale: param_definition_1.ParamDefinition.Numeric(0.33, { min: 0.1, max: 2, step: 0.1 }, { isEssential: true }) });
|
|
27
28
|
exports.HandleHelperParams = {
|
|
28
29
|
handle: param_definition_1.ParamDefinition.MappedStatic('off', {
|
|
@@ -55,7 +56,7 @@ var HandleHelper = /** @class */ (function () {
|
|
|
55
56
|
}
|
|
56
57
|
return changed;
|
|
57
58
|
};
|
|
58
|
-
this.scene = scene_1.Scene.create(webgl);
|
|
59
|
+
this.scene = scene_1.Scene.create(webgl, render_item_1.GraphicsRenderVariantsBlended);
|
|
59
60
|
this.setProps(props);
|
|
60
61
|
}
|
|
61
62
|
HandleHelper.prototype.getBoundingSphere = function (out, instanceId) {
|
|
@@ -75,7 +76,6 @@ var HandleHelper = /** @class */ (function () {
|
|
|
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var params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props.handle.params), { scale: props.handle.params.scale * _this.webgl.pixelRatio });
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_this.renderObject = createHandleRenderObject(params);
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p.handle.params = (0, tslib_1.__assign)({}, props.handle.params);
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@@ -37,6 +37,7 @@ export declare const HelperParams: {
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bumpAmplitude: any;
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quality: any;
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material: any;
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+
clip: any;
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}>, "on">;
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}>>;
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};
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@@ -68,6 +69,7 @@ export declare const DefaultHelperProps: PD.Values<{
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bumpAmplitude: any;
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quality: any;
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material: any;
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clip: any;
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}>, "on">;
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}>>;
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}>;
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@@ -14,6 +14,17 @@ import { Helper } from '../helper/helper';
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import { StereoCamera } from '../camera/stereo';
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import { PostprocessingPass, PostprocessingProps } from './postprocessing';
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import { MarkingProps } from './marking';
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declare type Props = {
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postprocessing: PostprocessingProps;
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marking: MarkingProps;
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transparentBackground: boolean;
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};
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declare type RenderContext = {
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renderer: Renderer;
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camera: Camera | StereoCamera;
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scene: Scene;
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helper: Helper;
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};
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export declare class DrawPass {
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private webgl;
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private readonly drawTarget;
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@@ -40,6 +51,7 @@ export declare class DrawPass {
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private _renderWboit;
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private _renderBlended;
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private _render;
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render(
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render(ctx: RenderContext, props: Props, toDrawingBuffer: boolean): void;
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getColorTarget(postprocessingProps: PostprocessingProps): RenderTarget;
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}
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export {};
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@@ -197,23 +197,23 @@ var DrawPass = /** @class */ (function () {
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}
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renderer.renderBlendedTransparent(scene.primitives, camera, null);
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};
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DrawPass.prototype._render = function (renderer, camera, scene, helper, toDrawingBuffer,
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DrawPass.prototype._render = function (renderer, camera, scene, helper, toDrawingBuffer, props) {
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var volumeRendering = scene.volumes.renderables.length > 0;
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var postprocessingEnabled = postprocessing_1.PostprocessingPass.isEnabled(
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var antialiasingEnabled = postprocessing_1.AntialiasingPass.isEnabled(
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var markingEnabled = marking_1.MarkingPass.isEnabled(
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var postprocessingEnabled = postprocessing_1.PostprocessingPass.isEnabled(props.postprocessing);
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var antialiasingEnabled = postprocessing_1.AntialiasingPass.isEnabled(props.postprocessing);
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var _a = camera.viewport, x = _a.x, y = _a.y, width = _a.width, height = _a.height;
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renderer.setViewport(x, y, width, height);
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renderer.update(camera);
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-
if (transparentBackground && !antialiasingEnabled && toDrawingBuffer) {
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|
+
if (props.transparentBackground && !antialiasingEnabled && toDrawingBuffer) {
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this.drawTarget.bind();
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renderer.clear(false);
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}
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if (this.wboitEnabled) {
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|
-
this._renderWboit(renderer, camera, scene, transparentBackground,
|
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|
+
this._renderWboit(renderer, camera, scene, props.transparentBackground, props.postprocessing);
|
|
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}
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215
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else {
|
|
216
|
-
this._renderBlended(renderer, camera, scene, !volumeRendering && !postprocessingEnabled && !antialiasingEnabled && toDrawingBuffer, transparentBackground,
|
|
216
|
+
this._renderBlended(renderer, camera, scene, !volumeRendering && !postprocessingEnabled && !antialiasingEnabled && toDrawingBuffer, props.transparentBackground, props.postprocessing);
|
|
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217
|
}
|
|
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218
|
if (postprocessingEnabled) {
|
|
219
219
|
this.postprocessing.target.bind();
|
|
@@ -225,7 +225,7 @@ var DrawPass = /** @class */ (function () {
|
|
|
225
225
|
this.drawTarget.bind();
|
|
226
226
|
}
|
|
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227
|
if (markingEnabled) {
|
|
228
|
-
var markingDepthTest =
|
|
228
|
+
var markingDepthTest = props.marking.ghostEdgeStrength < 1;
|
|
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229
|
if (markingDepthTest) {
|
|
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230
|
this.marking.depthTarget.bind();
|
|
231
231
|
renderer.clear(false);
|
|
@@ -234,7 +234,7 @@ var DrawPass = /** @class */ (function () {
|
|
|
234
234
|
this.marking.maskTarget.bind();
|
|
235
235
|
renderer.clear(false);
|
|
236
236
|
renderer.renderMarkingMask(scene.primitives, camera, markingDepthTest ? this.marking.depthTarget.texture : null);
|
|
237
|
-
this.marking.update(
|
|
237
|
+
this.marking.update(props.marking);
|
|
238
238
|
this.marking.render(camera.viewport, postprocessingEnabled ? this.postprocessing.target : this.colorTarget);
|
|
239
239
|
}
|
|
240
240
|
if (helper.debug.isEnabled) {
|
|
@@ -250,7 +250,7 @@ var DrawPass = /** @class */ (function () {
|
|
|
250
250
|
renderer.renderBlended(helper.camera.scene, helper.camera.camera, null);
|
|
251
251
|
}
|
|
252
252
|
if (antialiasingEnabled) {
|
|
253
|
-
this.antialiasing.render(camera, toDrawingBuffer,
|
|
253
|
+
this.antialiasing.render(camera, toDrawingBuffer, props.postprocessing);
|
|
254
254
|
}
|
|
255
255
|
else if (toDrawingBuffer) {
|
|
256
256
|
this.drawTarget.bind();
|
|
@@ -264,16 +264,17 @@ var DrawPass = /** @class */ (function () {
|
|
|
264
264
|
}
|
|
265
265
|
this.webgl.gl.flush();
|
|
266
266
|
};
|
|
267
|
-
DrawPass.prototype.render = function (
|
|
268
|
-
renderer.
|
|
267
|
+
DrawPass.prototype.render = function (ctx, props, toDrawingBuffer) {
|
|
268
|
+
var renderer = ctx.renderer, camera = ctx.camera, scene = ctx.scene, helper = ctx.helper;
|
|
269
|
+
renderer.setTransparentBackground(props.transparentBackground);
|
|
269
270
|
renderer.setDrawingBufferSize(this.colorTarget.getWidth(), this.colorTarget.getHeight());
|
|
270
271
|
renderer.setPixelRatio(this.webgl.pixelRatio);
|
|
271
272
|
if (stereo_1.StereoCamera.is(camera)) {
|
|
272
|
-
this._render(renderer, camera.left, scene, helper, toDrawingBuffer,
|
|
273
|
-
this._render(renderer, camera.right, scene, helper, toDrawingBuffer,
|
|
273
|
+
this._render(renderer, camera.left, scene, helper, toDrawingBuffer, props);
|
|
274
|
+
this._render(renderer, camera.right, scene, helper, toDrawingBuffer, props);
|
|
274
275
|
}
|
|
275
276
|
else {
|
|
276
|
-
this._render(renderer, camera, scene, helper, toDrawingBuffer,
|
|
277
|
+
this._render(renderer, camera, scene, helper, toDrawingBuffer, props);
|
|
277
278
|
}
|
|
278
279
|
};
|
|
279
280
|
DrawPass.prototype.getColorTarget = function (postprocessingProps) {
|
|
@@ -76,12 +76,13 @@ var ImagePass = /** @class */ (function () {
|
|
|
76
76
|
camera_1.Camera.copySnapshot(this._camera.state, this.camera.state);
|
|
77
77
|
util_1.Viewport.set(this._camera.viewport, 0, 0, this._width, this._height);
|
|
78
78
|
this._camera.update();
|
|
79
|
+
var ctx = { renderer: this.renderer, camera: this._camera, scene: this.scene, helper: this.helper };
|
|
79
80
|
if (multi_sample_1.MultiSamplePass.isEnabled(this.props.multiSample)) {
|
|
80
|
-
this.multiSampleHelper.render(
|
|
81
|
+
this.multiSampleHelper.render(ctx, this.props, false);
|
|
81
82
|
this._colorTarget = this.multiSamplePass.colorTarget;
|
|
82
83
|
}
|
|
83
84
|
else {
|
|
84
|
-
this.drawPass.render(
|
|
85
|
+
this.drawPass.render(ctx, this.props, false);
|
|
85
86
|
this._colorTarget = this.drawPass.getColorTarget(this.props.postprocessing);
|
|
86
87
|
}
|
|
87
88
|
};
|
|
@@ -20,7 +20,7 @@ var overlay_frag_1 = require("../../mol-gl/shader/marking/overlay.frag");
|
|
|
20
20
|
var color_1 = require("../../mol-util/color");
|
|
21
21
|
var edge_frag_1 = require("../../mol-gl/shader/marking/edge.frag");
|
|
22
22
|
exports.MarkingParams = {
|
|
23
|
-
enabled: param_definition_1.ParamDefinition.Boolean(
|
|
23
|
+
enabled: param_definition_1.ParamDefinition.Boolean(true),
|
|
24
24
|
highlightEdgeColor: param_definition_1.ParamDefinition.Color(color_1.Color.darken(color_1.Color.fromNormalizedRgb(1.0, 0.4, 0.6), 1.0)),
|
|
25
25
|
selectEdgeColor: param_definition_1.ParamDefinition.Color(color_1.Color.darken(color_1.Color.fromNormalizedRgb(0.2, 1.0, 0.1), 1.0)),
|
|
26
26
|
edgeScale: param_definition_1.ParamDefinition.Numeric(1, { min: 1, max: 3, step: 1 }, { description: 'Thickness of the edge.' }),
|