molstar 3.0.0-dev.3 → 3.0.0-dev.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (552) hide show
  1. package/build/viewer/embedded.html +5 -5
  2. package/build/viewer/index.html +25 -17
  3. package/build/viewer/molstar.css +1 -1
  4. package/build/viewer/molstar.js +1 -1
  5. package/lib/apps/docking-viewer/index.d.ts +2 -1
  6. package/lib/apps/docking-viewer/index.html +8 -8
  7. package/lib/apps/docking-viewer/index.js +87 -74
  8. package/lib/apps/docking-viewer/viewport.js +2 -1
  9. package/lib/apps/viewer/embedded.html +5 -5
  10. package/lib/apps/viewer/index.d.ts +36 -215
  11. package/lib/apps/viewer/index.html +25 -17
  12. package/lib/apps/viewer/index.js +139 -52
  13. package/lib/cli/cifschema/index.d.ts +1 -1
  14. package/lib/cli/cifschema/index.js +15 -35
  15. package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
  16. package/lib/commonjs/apps/docking-viewer/index.js +86 -73
  17. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  18. package/lib/commonjs/apps/viewer/index.d.ts +36 -215
  19. package/lib/commonjs/apps/viewer/index.js +139 -52
  20. package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
  21. package/lib/commonjs/cli/cifschema/index.js +15 -35
  22. package/lib/commonjs/examples/alpha-orbitals/index.js +2 -3
  23. package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
  24. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  25. package/lib/commonjs/examples/lighting/index.js +58 -41
  26. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
  27. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
  28. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
  29. package/lib/commonjs/extensions/anvil/behavior.d.ts +7 -0
  30. package/lib/commonjs/extensions/anvil/representation.d.ts +63 -0
  31. package/lib/commonjs/extensions/cellpack/representation.d.ts +13 -0
  32. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +39 -0
  33. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
  34. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
  35. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
  36. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
  37. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
  38. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
  39. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
  40. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
  41. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
  42. package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
  43. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  44. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +7 -0
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
  46. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +13 -0
  47. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
  48. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +65 -0
  49. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +8 -8
  50. package/lib/commonjs/mol-canvas3d/canvas3d.js +12 -4
  51. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
  52. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +7 -0
  53. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  54. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +7 -0
  55. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  56. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +6 -0
  57. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +4 -0
  58. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  59. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -2
  60. package/lib/commonjs/mol-canvas3d/passes/pick.js +9 -9
  61. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  62. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +6 -4
  63. package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
  64. package/lib/commonjs/mol-geo/geometry/base.d.ts +20 -0
  65. package/lib/commonjs/mol-geo/geometry/base.js +20 -1
  66. package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
  67. package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
  68. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +14 -1
  69. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +5 -3
  70. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +11 -0
  71. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +2 -2
  72. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +11 -0
  73. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +12 -0
  74. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  75. package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
  76. package/lib/commonjs/mol-geo/geometry/marker-data.js +0 -4
  77. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +1 -1
  78. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +13 -0
  79. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +5 -3
  80. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +11 -0
  81. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +13 -0
  82. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +5 -3
  83. package/lib/commonjs/mol-geo/geometry/substance-data.js +3 -3
  84. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +11 -0
  85. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +3 -3
  86. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +13 -0
  87. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +5 -3
  88. package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
  89. package/lib/commonjs/mol-gl/render-object.js +10 -10
  90. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +41 -33
  91. package/lib/commonjs/mol-gl/renderable/cylinders.js +4 -4
  92. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +11 -5
  93. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  94. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
  95. package/lib/commonjs/mol-gl/renderable/image.js +2 -2
  96. package/lib/commonjs/mol-gl/renderable/lines.d.ts +38 -32
  97. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  98. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +38 -30
  99. package/lib/commonjs/mol-gl/renderable/mesh.js +4 -4
  100. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
  101. package/lib/commonjs/mol-gl/renderable/points.js +2 -2
  102. package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
  103. package/lib/commonjs/mol-gl/renderable/schema.js +6 -12
  104. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +41 -33
  105. package/lib/commonjs/mol-gl/renderable/spheres.js +4 -4
  106. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
  107. package/lib/commonjs/mol-gl/renderable/text.js +2 -2
  108. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +13 -5
  109. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  110. package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
  111. package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
  112. package/lib/commonjs/mol-gl/renderer.js +12 -74
  113. package/lib/commonjs/mol-gl/scene.d.ts +2 -2
  114. package/lib/commonjs/mol-gl/scene.js +7 -5
  115. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  116. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  117. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  118. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  119. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
  120. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
  121. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  122. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  123. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  124. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  125. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  126. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  129. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
  130. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
  131. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  132. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  133. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +1 -1
  134. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +1 -1
  135. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  136. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  137. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  138. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  139. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  140. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  141. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  142. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  143. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  144. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  145. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  146. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  147. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  148. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  149. package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
  150. package/lib/commonjs/mol-gl/shader-code.js +42 -13
  151. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
  152. package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
  153. package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
  154. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
  155. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
  156. package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
  157. package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
  158. package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
  159. package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
  160. package/lib/commonjs/mol-model/structure/model/model.js +15 -5
  161. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
  162. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
  163. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
  164. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
  165. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
  166. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
  167. package/lib/commonjs/mol-model/structure/model/types.js +9 -0
  168. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
  169. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +26 -0
  170. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +13 -0
  171. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +13 -0
  172. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +39 -0
  173. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +52 -0
  174. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +12 -0
  175. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
  176. package/lib/commonjs/mol-plugin/commands.d.ts +4 -4
  177. package/lib/commonjs/mol-plugin/config.d.ts +2 -0
  178. package/lib/commonjs/mol-plugin/config.js +10 -3
  179. package/lib/commonjs/mol-plugin/spec.js +1 -0
  180. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +21 -0
  181. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
  182. package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
  183. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
  184. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
  185. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
  186. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
  187. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
  188. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
  189. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +15 -1
  190. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
  191. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +54 -0
  192. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +3 -2
  193. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +11 -6
  194. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
  195. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +8 -17
  196. package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
  197. package/lib/commonjs/mol-plugin-ui/index.js +13 -16
  198. package/lib/commonjs/mol-plugin-ui/plugin.d.ts +1 -1
  199. package/lib/commonjs/mol-plugin-ui/plugin.js +76 -10
  200. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
  201. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +13 -0
  202. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +11 -0
  203. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +13 -0
  204. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +11 -0
  205. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +11 -0
  206. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +13 -0
  207. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +13 -0
  208. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +13 -0
  209. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +72 -0
  210. package/lib/commonjs/mol-repr/structure/params.d.ts +96 -0
  211. package/lib/commonjs/mol-repr/structure/registry.d.ts +175 -1
  212. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +39 -0
  213. package/lib/commonjs/mol-repr/structure/representation/backbone.js +2 -1
  214. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +39 -0
  215. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +2 -1
  216. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +39 -0
  217. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +2 -1
  218. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +39 -0
  219. package/lib/commonjs/mol-repr/structure/representation/cartoon.js +2 -1
  220. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +39 -0
  221. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +2 -1
  222. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +39 -0
  223. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +2 -1
  224. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +33 -0
  225. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +36 -3
  226. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +33 -0
  227. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +39 -0
  228. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +2 -1
  229. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +39 -0
  230. package/lib/commonjs/mol-repr/structure/representation/orientation.js +2 -1
  231. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +33 -0
  232. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +39 -0
  233. package/lib/commonjs/mol-repr/structure/representation/putty.js +2 -1
  234. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +39 -0
  235. package/lib/commonjs/mol-repr/structure/representation/spacefill.js +2 -1
  236. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +96 -0
  237. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +26 -0
  238. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +11 -0
  239. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +26 -0
  240. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
  241. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +11 -0
  242. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
  243. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +13 -0
  244. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +13 -0
  245. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +13 -0
  246. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +11 -0
  247. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +11 -0
  248. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +26 -0
  249. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +13 -0
  250. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -0
  251. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +52 -0
  252. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +11 -0
  253. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +13 -2
  254. package/lib/commonjs/mol-repr/structure/visual/label-text.js +2 -2
  255. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +13 -0
  256. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +11 -0
  257. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +13 -0
  258. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +13 -0
  259. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +13 -0
  260. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +26 -0
  261. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +26 -0
  262. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +13 -0
  263. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +13 -0
  264. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +13 -0
  265. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
  266. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +13 -0
  267. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -1
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@@ -88,7 +88,7 @@ export var Spheres;
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  ValueCell.update(spheres.groupBuffer, groups);
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  return spheres;
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  }
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- Spheres.Params = __assign(__assign({}, BaseGeometry.Params), { sizeFactor: PD.Numeric(1, { min: 0, max: 10, step: 0.1 }), doubleSided: PD.Boolean(false, BaseGeometry.CustomQualityParamInfo), ignoreLight: PD.Boolean(false, BaseGeometry.ShadingCategory), xrayShaded: PD.Boolean(false, BaseGeometry.ShadingCategory) });
91
+ Spheres.Params = __assign(__assign({}, BaseGeometry.Params), { sizeFactor: PD.Numeric(1, { min: 0, max: 10, step: 0.1 }), doubleSided: PD.Boolean(false, BaseGeometry.CustomQualityParamInfo), ignoreLight: PD.Boolean(false, BaseGeometry.ShadingCategory), xrayShaded: PD.Boolean(false, BaseGeometry.ShadingCategory), bumpFrequency: PD.Numeric(0, { min: 0, max: 10, step: 0.1 }, BaseGeometry.ShadingCategory), bumpAmplitude: PD.Numeric(1, { min: 0, max: 5, step: 0.1 }, BaseGeometry.ShadingCategory) });
92
92
  Spheres.Utils = {
93
93
  Params: Spheres.Params,
94
94
  createEmpty: createEmpty,
@@ -132,7 +132,7 @@ export var Spheres;
132
132
  var padding = spheres.boundingSphere.radius ? getMaxSize(size) * props.sizeFactor : 0;
133
133
  var invariantBoundingSphere = Sphere3D.expand(Sphere3D(), spheres.boundingSphere, padding);
134
134
  var boundingSphere = calculateTransformBoundingSphere(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
135
- return __assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign({ aPosition: spheres.centerBuffer, aMapping: spheres.mappingBuffer, aGroup: spheres.groupBuffer, elements: spheres.indexBuffer, boundingSphere: ValueCell.create(boundingSphere), invariantBoundingSphere: ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: ValueCell.create(Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), { padding: ValueCell.create(padding) }), BaseGeometry.createValues(props, counts)), { uSizeFactor: ValueCell.create(props.sizeFactor), dDoubleSided: ValueCell.create(props.doubleSided), dIgnoreLight: ValueCell.create(props.ignoreLight), dXrayShaded: ValueCell.create(props.xrayShaded) });
135
+ return __assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign({ aPosition: spheres.centerBuffer, aMapping: spheres.mappingBuffer, aGroup: spheres.groupBuffer, elements: spheres.indexBuffer, boundingSphere: ValueCell.create(boundingSphere), invariantBoundingSphere: ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: ValueCell.create(Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), { padding: ValueCell.create(padding) }), BaseGeometry.createValues(props, counts)), { uSizeFactor: ValueCell.create(props.sizeFactor), uDoubleSided: ValueCell.create(props.doubleSided), dIgnoreLight: ValueCell.create(props.ignoreLight), dXrayShaded: ValueCell.create(props.xrayShaded), uBumpFrequency: ValueCell.create(props.bumpFrequency), uBumpAmplitude: ValueCell.create(props.bumpAmplitude) });
136
136
  }
137
137
  function createValuesSimple(spheres, props, colorValue, sizeValue, transform) {
138
138
  var s = BaseGeometry.createSimple(colorValue, sizeValue, transform);
@@ -142,9 +142,11 @@ export var Spheres;
142
142
  function updateValues(values, props) {
143
143
  BaseGeometry.updateValues(values, props);
144
144
  ValueCell.updateIfChanged(values.uSizeFactor, props.sizeFactor);
145
- ValueCell.updateIfChanged(values.dDoubleSided, props.doubleSided);
145
+ ValueCell.updateIfChanged(values.uDoubleSided, props.doubleSided);
146
146
  ValueCell.updateIfChanged(values.dIgnoreLight, props.ignoreLight);
147
147
  ValueCell.updateIfChanged(values.dXrayShaded, props.xrayShaded);
148
+ ValueCell.updateIfChanged(values.uBumpFrequency, props.bumpFrequency);
149
+ ValueCell.updateIfChanged(values.uBumpAmplitude, props.bumpAmplitude);
148
150
  }
149
151
  function updateBoundingSphere(values, spheres) {
150
152
  var padding = spheres.boundingSphere.radius
@@ -10,13 +10,13 @@ import { createNullTexture } from '../../mol-gl/webgl/texture';
10
10
  import { Material } from '../../mol-util/material';
11
11
  export function applySubstanceMaterial(array, start, end, material) {
12
12
  for (var i = start; i < end; ++i) {
13
- Material.toArray(material, array, i * 3);
14
- array[i * 3 + 2] = 255;
13
+ Material.toArray(material, array, i * 4);
14
+ array[i * 4 + 3] = 255;
15
15
  }
16
16
  return true;
17
17
  }
18
18
  export function clearSubstance(array, start, end) {
19
- array.fill(0, start * 3, end * 3);
19
+ array.fill(0, start * 4, end * 4);
20
20
  return true;
21
21
  }
22
22
  export function createSubstance(count, substanceData) {
@@ -63,6 +63,17 @@ export declare namespace Text {
63
63
  material: PD.Group<PD.Normalize<{
64
64
  metalness: number;
65
65
  roughness: number;
66
+ bumpiness: number;
67
+ }>>;
68
+ clip: PD.Group<PD.Normalize<{
69
+ variant: import("../../../mol-util/clip").Clip.Variant;
70
+ objects: PD.Normalize<{
71
+ type: any;
72
+ invert: any;
73
+ position: any;
74
+ rotation: any;
75
+ scale: any;
76
+ }>[];
66
77
  }>>;
67
78
  };
68
79
  type Params = typeof Params;
@@ -397,10 +397,10 @@ export function applyTextureMeshSubstanceSmoothing(values, resolution, stride, w
397
397
  if (!isSupportedSubstanceType(values.dSubstanceType.ref.value))
398
398
  return;
399
399
  stride *= 3; // triple because TextureMesh is never indexed (no elements buffer)
400
- if (!webgl.namedTextures[ColorSmoothingRgbName]) {
401
- webgl.namedTextures[ColorSmoothingRgbName] = webgl.resources.texture('image-uint8', 'rgb', 'ubyte', 'nearest');
400
+ if (!webgl.namedTextures[ColorSmoothingRgbaName]) {
401
+ webgl.namedTextures[ColorSmoothingRgbaName] = webgl.resources.texture('image-uint8', 'rgba', 'ubyte', 'nearest');
402
402
  }
403
- var colorData = webgl.namedTextures[ColorSmoothingRgbName];
403
+ var colorData = webgl.namedTextures[ColorSmoothingRgbaName];
404
404
  colorData.load(values.tSubstance.ref.value);
405
405
  var smoothingData = calcTextureMeshColorSmoothing({
406
406
  vertexCount: values.uVertexCount.ref.value,
@@ -45,11 +45,24 @@ export declare namespace TextureMesh {
45
45
  flatShaded: PD.BooleanParam;
46
46
  ignoreLight: PD.BooleanParam;
47
47
  xrayShaded: PD.BooleanParam;
48
+ bumpFrequency: PD.Numeric;
49
+ bumpAmplitude: PD.Numeric;
48
50
  alpha: PD.Numeric;
49
51
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
50
52
  material: PD.Group<PD.Normalize<{
51
53
  metalness: number;
52
54
  roughness: number;
55
+ bumpiness: number;
56
+ }>>;
57
+ clip: PD.Group<PD.Normalize<{
58
+ variant: import("../../../mol-util/clip").Clip.Variant;
59
+ objects: PD.Normalize<{
60
+ type: any;
61
+ invert: any;
62
+ position: any;
63
+ rotation: any;
64
+ scale: any;
65
+ }>[];
53
66
  }>>;
54
67
  };
55
68
  type Params = typeof Params;
@@ -86,7 +86,7 @@ export var TextureMesh;
86
86
  return create(0, 0, vt, gt, nt, bs, textureMesh);
87
87
  }
88
88
  TextureMesh.createEmpty = createEmpty;
89
- TextureMesh.Params = __assign(__assign({}, BaseGeometry.Params), { doubleSided: PD.Boolean(false, BaseGeometry.CustomQualityParamInfo), flipSided: PD.Boolean(false, BaseGeometry.ShadingCategory), flatShaded: PD.Boolean(false, BaseGeometry.ShadingCategory), ignoreLight: PD.Boolean(false, BaseGeometry.ShadingCategory), xrayShaded: PD.Boolean(false, BaseGeometry.ShadingCategory) });
89
+ TextureMesh.Params = __assign(__assign({}, BaseGeometry.Params), { doubleSided: PD.Boolean(false, BaseGeometry.CustomQualityParamInfo), flipSided: PD.Boolean(false, BaseGeometry.ShadingCategory), flatShaded: PD.Boolean(false, BaseGeometry.ShadingCategory), ignoreLight: PD.Boolean(false, BaseGeometry.ShadingCategory), xrayShaded: PD.Boolean(false, BaseGeometry.ShadingCategory), bumpFrequency: PD.Numeric(0, { min: 0, max: 10, step: 0.1 }, BaseGeometry.ShadingCategory), bumpAmplitude: PD.Numeric(1, { min: 0, max: 5, step: 0.1 }, BaseGeometry.ShadingCategory) });
90
90
  TextureMesh.Utils = {
91
91
  Params: TextureMesh.Params,
92
92
  createEmpty: createEmpty,
@@ -110,7 +110,7 @@ export var TextureMesh;
110
110
  var counts = { drawCount: textureMesh.vertexCount, vertexCount: textureMesh.vertexCount, groupCount: groupCount, instanceCount: instanceCount };
111
111
  var invariantBoundingSphere = Sphere3D.clone(textureMesh.boundingSphere);
112
112
  var boundingSphere = calculateTransformBoundingSphere(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
113
- return __assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign({ uGeoTexDim: textureMesh.geoTextureDim, tPosition: textureMesh.vertexTexture, tGroup: textureMesh.groupTexture, tNormal: textureMesh.normalTexture, boundingSphere: ValueCell.create(boundingSphere), invariantBoundingSphere: ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: ValueCell.create(Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), substance), clipping), transform), BaseGeometry.createValues(props, counts)), { dDoubleSided: ValueCell.create(props.doubleSided), dFlatShaded: ValueCell.create(props.flatShaded), dFlipSided: ValueCell.create(props.flipSided), dIgnoreLight: ValueCell.create(props.ignoreLight), dXrayShaded: ValueCell.create(props.xrayShaded), dGeoTexture: ValueCell.create(true), meta: ValueCell.create(textureMesh.meta) });
113
+ return __assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign({ uGeoTexDim: textureMesh.geoTextureDim, tPosition: textureMesh.vertexTexture, tGroup: textureMesh.groupTexture, tNormal: textureMesh.normalTexture, boundingSphere: ValueCell.create(boundingSphere), invariantBoundingSphere: ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: ValueCell.create(Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), substance), clipping), transform), BaseGeometry.createValues(props, counts)), { uDoubleSided: ValueCell.create(props.doubleSided), dFlatShaded: ValueCell.create(props.flatShaded), dFlipSided: ValueCell.create(props.flipSided), dIgnoreLight: ValueCell.create(props.ignoreLight), dXrayShaded: ValueCell.create(props.xrayShaded), uBumpFrequency: ValueCell.create(props.bumpFrequency), uBumpAmplitude: ValueCell.create(props.bumpAmplitude), dGeoTexture: ValueCell.create(true), meta: ValueCell.create(textureMesh.meta) });
114
114
  }
115
115
  function createValuesSimple(textureMesh, props, colorValue, sizeValue, transform) {
116
116
  var s = BaseGeometry.createSimple(colorValue, sizeValue, transform);
@@ -119,11 +119,13 @@ export var TextureMesh;
119
119
  }
120
120
  function updateValues(values, props) {
121
121
  BaseGeometry.updateValues(values, props);
122
- ValueCell.updateIfChanged(values.dDoubleSided, props.doubleSided);
122
+ ValueCell.updateIfChanged(values.uDoubleSided, props.doubleSided);
123
123
  ValueCell.updateIfChanged(values.dFlatShaded, props.flatShaded);
124
124
  ValueCell.updateIfChanged(values.dFlipSided, props.flipSided);
125
125
  ValueCell.updateIfChanged(values.dIgnoreLight, props.ignoreLight);
126
126
  ValueCell.updateIfChanged(values.dXrayShaded, props.xrayShaded);
127
+ ValueCell.updateIfChanged(values.uBumpFrequency, props.bumpFrequency);
128
+ ValueCell.updateIfChanged(values.uBumpAmplitude, props.bumpAmplitude);
127
129
  }
128
130
  function updateBoundingSphere(values, textureMesh) {
129
131
  var invariantBoundingSphere = Sphere3D.clone(textureMesh.boundingSphere);
@@ -14,6 +14,7 @@ import { TextValues } from './renderable/text';
14
14
  import { TextureMeshValues } from './renderable/texture-mesh';
15
15
  import { ImageValues } from './renderable/image';
16
16
  import { CylindersValues } from './renderable/cylinders';
17
+ import { GraphicsRenderVariant } from './webgl/render-item';
17
18
  export declare const getNextMaterialId: () => number;
18
19
  export interface GraphicsRenderObject<T extends RenderObjectType = RenderObjectType> {
19
20
  readonly id: number;
@@ -25,4 +26,4 @@ export interface GraphicsRenderObject<T extends RenderObjectType = RenderObjectT
25
26
  export declare type RenderObjectType = 'mesh' | 'points' | 'spheres' | 'cylinders' | 'text' | 'lines' | 'direct-volume' | 'image' | 'texture-mesh';
26
27
  export declare type RenderObjectValues<T extends RenderObjectType> = T extends 'mesh' ? MeshValues : T extends 'points' ? PointsValues : T extends 'spheres' ? SpheresValues : T extends 'cylinders' ? CylindersValues : T extends 'text' ? TextValues : T extends 'lines' ? LinesValues : T extends 'direct-volume' ? DirectVolumeValues : T extends 'image' ? ImageValues : T extends 'texture-mesh' ? TextureMeshValues : never;
27
28
  export declare function createRenderObject<T extends RenderObjectType>(type: T, values: RenderObjectValues<T>, state: RenderableState, materialId: number): GraphicsRenderObject<T>;
28
- export declare function createRenderable<T extends RenderObjectType>(ctx: WebGLContext, o: GraphicsRenderObject<T>): Renderable<any>;
29
+ export declare function createRenderable<T extends RenderObjectType>(ctx: WebGLContext, o: GraphicsRenderObject<T>, variants: GraphicsRenderVariant[]): Renderable<any>;
@@ -19,17 +19,17 @@ export var getNextMaterialId = idFactory(0, 0x7FFFFFFF);
19
19
  export function createRenderObject(type, values, state, materialId) {
20
20
  return { id: getNextId(), type: type, values: values, state: state, materialId: materialId };
21
21
  }
22
- export function createRenderable(ctx, o) {
22
+ export function createRenderable(ctx, o, variants) {
23
23
  switch (o.type) {
24
- case 'mesh': return MeshRenderable(ctx, o.id, o.values, o.state, o.materialId);
25
- case 'points': return PointsRenderable(ctx, o.id, o.values, o.state, o.materialId);
26
- case 'spheres': return SpheresRenderable(ctx, o.id, o.values, o.state, o.materialId);
27
- case 'cylinders': return CylindersRenderable(ctx, o.id, o.values, o.state, o.materialId);
28
- case 'text': return TextRenderable(ctx, o.id, o.values, o.state, o.materialId);
29
- case 'lines': return LinesRenderable(ctx, o.id, o.values, o.state, o.materialId);
30
- case 'direct-volume': return DirectVolumeRenderable(ctx, o.id, o.values, o.state, o.materialId);
31
- case 'image': return ImageRenderable(ctx, o.id, o.values, o.state, o.materialId);
32
- case 'texture-mesh': return TextureMeshRenderable(ctx, o.id, o.values, o.state, o.materialId);
24
+ case 'mesh': return MeshRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
25
+ case 'points': return PointsRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
26
+ case 'spheres': return SpheresRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
27
+ case 'cylinders': return CylindersRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
28
+ case 'text': return TextRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
29
+ case 'lines': return LinesRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
30
+ case 'direct-volume': return DirectVolumeRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
31
+ case 'image': return ImageRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
32
+ case 'texture-mesh': return TextureMeshRenderable(ctx, o.id, o.values, o.state, o.materialId, variants);
33
33
  }
34
34
  throw new Error('unsupported type');
35
35
  }
@@ -1,11 +1,12 @@
1
1
  /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
6
6
  import { Renderable, RenderableState } from '../renderable';
7
7
  import { WebGLContext } from '../webgl/context';
8
- import { AttributeSpec, Values, ElementsSpec, ValueSpec, DefineSpec } from './schema';
8
+ import { GraphicsRenderVariant } from '../webgl/render-item';
9
+ import { AttributeSpec, Values, ElementsSpec, ValueSpec, DefineSpec, UniformSpec } from './schema';
9
10
  export declare const CylindersSchema: {
10
11
  aGroup: AttributeSpec<"float32">;
11
12
  aStart: AttributeSpec<"float32">;
@@ -15,24 +16,34 @@ export declare const CylindersSchema: {
15
16
  aCap: AttributeSpec<"float32">;
16
17
  elements: ElementsSpec<"uint32">;
17
18
  padding: ValueSpec<"number">;
18
- dDoubleSided: DefineSpec<"boolean">;
19
+ uDoubleSided: UniformSpec<"b">;
19
20
  dIgnoreLight: DefineSpec<"boolean">;
20
21
  dXrayShaded: DefineSpec<"boolean">;
21
- uSize: import("./schema").UniformSpec<"f">;
22
- uSizeTexDim: import("./schema").UniformSpec<"v2">;
22
+ uBumpFrequency: UniformSpec<"f">;
23
+ uBumpAmplitude: UniformSpec<"f">;
24
+ uSize: UniformSpec<"f">;
25
+ uSizeTexDim: UniformSpec<"v2">;
23
26
  tSize: import("./schema").TextureSpec<"image-uint8">;
24
27
  dSizeType: DefineSpec<"string">;
25
- uSizeFactor: import("./schema").UniformSpec<"f">;
28
+ uSizeFactor: UniformSpec<"f">;
26
29
  dLightCount: DefineSpec<"number">;
30
+ dClipObjectCount: DefineSpec<"number">;
31
+ dClipVariant: DefineSpec<"string">;
32
+ uClipObjectType: UniformSpec<"i[]">;
33
+ uClipObjectInvert: UniformSpec<"b[]">;
34
+ uClipObjectPosition: UniformSpec<"v3[]">;
35
+ uClipObjectRotation: UniformSpec<"v4[]">;
36
+ uClipObjectScale: UniformSpec<"v3[]">;
27
37
  aInstance: AttributeSpec<"float32">;
28
38
  aTransform: AttributeSpec<"float32">;
29
- uAlpha: import("./schema").UniformSpec<"f">;
30
- uMetalness: import("./schema").UniformSpec<"f">;
31
- uRoughness: import("./schema").UniformSpec<"f">;
32
- uVertexCount: import("./schema").UniformSpec<"i">;
33
- uInstanceCount: import("./schema").UniformSpec<"i">;
34
- uGroupCount: import("./schema").UniformSpec<"i">;
35
- uInvariantBoundingSphere: import("./schema").UniformSpec<"v4">;
39
+ uAlpha: UniformSpec<"f">;
40
+ uMetalness: UniformSpec<"f">;
41
+ uRoughness: UniformSpec<"f">;
42
+ uBumpiness: UniformSpec<"f">;
43
+ uVertexCount: UniformSpec<"i">;
44
+ uInstanceCount: UniformSpec<"i">;
45
+ uGroupCount: UniformSpec<"i">;
46
+ uInvariantBoundingSphere: UniformSpec<"v4">;
36
47
  drawCount: ValueSpec<"number">;
37
48
  instanceCount: ValueSpec<"number">;
38
49
  alpha: ValueSpec<"number">;
@@ -42,43 +53,40 @@ export declare const CylindersSchema: {
42
53
  hasReflection: ValueSpec<"boolean">;
43
54
  boundingSphere: ValueSpec<"sphere">;
44
55
  invariantBoundingSphere: ValueSpec<"sphere">;
45
- dClipObjectCount: DefineSpec<"number">;
46
- dClipVariant: DefineSpec<"string">;
47
- uClippingTexDim: import("./schema").UniformSpec<"v2">;
56
+ uClippingTexDim: UniformSpec<"v2">;
48
57
  tClipping: import("./schema").TextureSpec<"image-uint8">;
49
58
  dClipping: DefineSpec<"boolean">;
50
- uSubstanceTexDim: import("./schema").UniformSpec<"v2">;
59
+ uSubstanceTexDim: UniformSpec<"v2">;
51
60
  tSubstance: import("./schema").TextureSpec<"image-uint8">;
52
61
  dSubstance: DefineSpec<"boolean">;
53
- uSubstanceGridDim: import("./schema").UniformSpec<"v3">;
54
- uSubstanceGridTransform: import("./schema").UniformSpec<"v4">;
62
+ uSubstanceGridDim: UniformSpec<"v3">;
63
+ uSubstanceGridTransform: UniformSpec<"v4">;
55
64
  tSubstanceGrid: import("./schema").TextureSpec<"texture">;
56
65
  dSubstanceType: DefineSpec<"string">;
57
- uTransparencyTexDim: import("./schema").UniformSpec<"v2">;
66
+ uTransparencyTexDim: UniformSpec<"v2">;
58
67
  tTransparency: import("./schema").TextureSpec<"image-uint8">;
59
68
  dTransparency: DefineSpec<"boolean">;
60
69
  transparencyAverage: ValueSpec<"number">;
61
- uTransparencyGridDim: import("./schema").UniformSpec<"v3">;
62
- uTransparencyGridTransform: import("./schema").UniformSpec<"v4">;
70
+ uTransparencyGridDim: UniformSpec<"v3">;
71
+ uTransparencyGridTransform: UniformSpec<"v4">;
63
72
  tTransparencyGrid: import("./schema").TextureSpec<"texture">;
64
73
  dTransparencyType: DefineSpec<"string">;
65
- uOverpaintTexDim: import("./schema").UniformSpec<"v2">;
74
+ uOverpaintTexDim: UniformSpec<"v2">;
66
75
  tOverpaint: import("./schema").TextureSpec<"image-uint8">;
67
76
  dOverpaint: DefineSpec<"boolean">;
68
- uOverpaintGridDim: import("./schema").UniformSpec<"v3">;
69
- uOverpaintGridTransform: import("./schema").UniformSpec<"v4">;
77
+ uOverpaintGridDim: UniformSpec<"v3">;
78
+ uOverpaintGridTransform: UniformSpec<"v4">;
70
79
  tOverpaintGrid: import("./schema").TextureSpec<"texture">;
71
80
  dOverpaintType: DefineSpec<"string">;
72
- uMarker: import("./schema").UniformSpec<"f">;
73
- uMarkerTexDim: import("./schema").UniformSpec<"v2">;
81
+ uMarker: UniformSpec<"f">;
82
+ uMarkerTexDim: UniformSpec<"v2">;
74
83
  tMarker: import("./schema").TextureSpec<"image-uint8">;
75
- dMarkerType: DefineSpec<"string">;
76
84
  markerAverage: ValueSpec<"number">;
77
85
  markerStatus: ValueSpec<"number">;
78
- uColor: import("./schema").UniformSpec<"v3">;
79
- uColorTexDim: import("./schema").UniformSpec<"v2">;
80
- uColorGridDim: import("./schema").UniformSpec<"v3">;
81
- uColorGridTransform: import("./schema").UniformSpec<"v4">;
86
+ uColor: UniformSpec<"v3">;
87
+ uColorTexDim: UniformSpec<"v2">;
88
+ uColorGridDim: UniformSpec<"v3">;
89
+ uColorGridTransform: UniformSpec<"v4">;
82
90
  tColor: import("./schema").TextureSpec<"image-uint8">;
83
91
  tPalette: import("./schema").TextureSpec<"image-uint8">;
84
92
  tColorGrid: import("./schema").TextureSpec<"texture">;
@@ -87,4 +95,4 @@ export declare const CylindersSchema: {
87
95
  };
88
96
  export declare type CylindersSchema = typeof CylindersSchema;
89
97
  export declare type CylindersValues = Values<CylindersSchema>;
90
- export declare function CylindersRenderable(ctx: WebGLContext, id: number, values: CylindersValues, state: RenderableState, materialId: number): Renderable<CylindersValues>;
98
+ export declare function CylindersRenderable(ctx: WebGLContext, id: number, values: CylindersValues, state: RenderableState, materialId: number, variants: GraphicsRenderVariant[]): Renderable<CylindersValues>;
@@ -1,22 +1,22 @@
1
1
  /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
6
6
  import { __assign } from "tslib";
7
7
  import { createRenderable } from '../renderable';
8
8
  import { createGraphicsRenderItem } from '../webgl/render-item';
9
- import { GlobalUniformSchema, BaseSchema, AttributeSpec, InternalSchema, SizeSchema, ElementsSpec, ValueSpec, DefineSpec, GlobalTextureSchema } from './schema';
9
+ import { GlobalUniformSchema, BaseSchema, AttributeSpec, InternalSchema, SizeSchema, ElementsSpec, ValueSpec, DefineSpec, GlobalTextureSchema, UniformSpec } from './schema';
10
10
  import { CylindersShaderCode } from '../shader-code';
11
11
  import { ValueCell } from '../../mol-util';
12
- export var CylindersSchema = __assign(__assign(__assign({}, BaseSchema), SizeSchema), { aGroup: AttributeSpec('float32', 1, 0), aStart: AttributeSpec('float32', 3, 0), aEnd: AttributeSpec('float32', 3, 0), aMapping: AttributeSpec('float32', 3, 0), aScale: AttributeSpec('float32', 1, 0), aCap: AttributeSpec('float32', 1, 0), elements: ElementsSpec('uint32'), padding: ValueSpec('number'), dDoubleSided: DefineSpec('boolean'), dIgnoreLight: DefineSpec('boolean'), dXrayShaded: DefineSpec('boolean') });
13
- export function CylindersRenderable(ctx, id, values, state, materialId) {
12
+ export var CylindersSchema = __assign(__assign(__assign({}, BaseSchema), SizeSchema), { aGroup: AttributeSpec('float32', 1, 0), aStart: AttributeSpec('float32', 3, 0), aEnd: AttributeSpec('float32', 3, 0), aMapping: AttributeSpec('float32', 3, 0), aScale: AttributeSpec('float32', 1, 0), aCap: AttributeSpec('float32', 1, 0), elements: ElementsSpec('uint32'), padding: ValueSpec('number'), uDoubleSided: UniformSpec('b'), dIgnoreLight: DefineSpec('boolean'), dXrayShaded: DefineSpec('boolean'), uBumpFrequency: UniformSpec('f'), uBumpAmplitude: UniformSpec('f') });
13
+ export function CylindersRenderable(ctx, id, values, state, materialId, variants) {
14
14
  var schema = __assign(__assign(__assign(__assign({}, GlobalUniformSchema), GlobalTextureSchema), InternalSchema), CylindersSchema);
15
15
  var internalValues = {
16
16
  uObjectId: ValueCell.create(id),
17
17
  };
18
18
  var shaderCode = CylindersShaderCode;
19
- var renderItem = createGraphicsRenderItem(ctx, 'triangles', shaderCode, schema, __assign(__assign({}, values), internalValues), materialId);
19
+ var renderItem = createGraphicsRenderItem(ctx, 'triangles', shaderCode, schema, __assign(__assign({}, values), internalValues), materialId, variants);
20
20
  return createRenderable(renderItem, values, state);
21
21
  }
22
22
  //# sourceMappingURL=cylinders.js.map
@@ -5,6 +5,7 @@
5
5
  */
6
6
  import { Renderable, RenderableState } from '../renderable';
7
7
  import { WebGLContext } from '../webgl/context';
8
+ import { GraphicsRenderVariant } from '../webgl/render-item';
8
9
  import { AttributeSpec, Values, UniformSpec, TextureSpec, ElementsSpec, DefineSpec } from './schema';
9
10
  export declare const DirectVolumeSchema: {
10
11
  aPosition: AttributeSpec<"float32">;
@@ -34,17 +35,25 @@ export declare const DirectVolumeSchema: {
34
35
  uCartnToUnit: UniformSpec<"m4">;
35
36
  uUnitToCartn: UniformSpec<"m4">;
36
37
  dPackedGroup: DefineSpec<"boolean">;
37
- dDoubleSided: DefineSpec<"boolean">;
38
+ uDoubleSided: UniformSpec<"b">;
38
39
  dFlipSided: DefineSpec<"boolean">;
39
40
  dFlatShaded: DefineSpec<"boolean">;
40
41
  dIgnoreLight: DefineSpec<"boolean">;
41
42
  dXrayShaded: DefineSpec<"boolean">;
42
43
  dLightCount: DefineSpec<"number">;
44
+ dClipObjectCount: DefineSpec<"number">;
45
+ dClipVariant: DefineSpec<"string">;
46
+ uClipObjectType: UniformSpec<"i[]">;
47
+ uClipObjectInvert: UniformSpec<"b[]">;
48
+ uClipObjectPosition: UniformSpec<"v3[]">;
49
+ uClipObjectRotation: UniformSpec<"v4[]">;
50
+ uClipObjectScale: UniformSpec<"v3[]">;
43
51
  aInstance: AttributeSpec<"float32">;
44
52
  aTransform: AttributeSpec<"float32">;
45
53
  uAlpha: UniformSpec<"f">;
46
54
  uMetalness: UniformSpec<"f">;
47
55
  uRoughness: UniformSpec<"f">;
56
+ uBumpiness: UniformSpec<"f">;
48
57
  uVertexCount: UniformSpec<"i">;
49
58
  uInstanceCount: UniformSpec<"i">;
50
59
  uGroupCount: UniformSpec<"i">;
@@ -58,8 +67,6 @@ export declare const DirectVolumeSchema: {
58
67
  hasReflection: import("./schema").ValueSpec<"boolean">;
59
68
  boundingSphere: import("./schema").ValueSpec<"sphere">;
60
69
  invariantBoundingSphere: import("./schema").ValueSpec<"sphere">;
61
- dClipObjectCount: DefineSpec<"number">;
62
- dClipVariant: DefineSpec<"string">;
63
70
  uClippingTexDim: UniformSpec<"v2">;
64
71
  tClipping: TextureSpec<"image-uint8">;
65
72
  dClipping: DefineSpec<"boolean">;
@@ -88,7 +95,6 @@ export declare const DirectVolumeSchema: {
88
95
  uMarker: UniformSpec<"f">;
89
96
  uMarkerTexDim: UniformSpec<"v2">;
90
97
  tMarker: TextureSpec<"image-uint8">;
91
- dMarkerType: DefineSpec<"string">;
92
98
  markerAverage: import("./schema").ValueSpec<"number">;
93
99
  markerStatus: import("./schema").ValueSpec<"number">;
94
100
  uColorGridDim: UniformSpec<"v3">;
@@ -99,4 +105,4 @@ export declare const DirectVolumeSchema: {
99
105
  };
100
106
  export declare type DirectVolumeSchema = typeof DirectVolumeSchema;
101
107
  export declare type DirectVolumeValues = Values<DirectVolumeSchema>;
102
- export declare function DirectVolumeRenderable(ctx: WebGLContext, id: number, values: DirectVolumeValues, state: RenderableState, materialId: number): Renderable<DirectVolumeValues>;
108
+ export declare function DirectVolumeRenderable(ctx: WebGLContext, id: number, values: DirectVolumeValues, state: RenderableState, materialId: number, variants: GraphicsRenderVariant[]): Renderable<DirectVolumeValues>;
@@ -9,8 +9,8 @@ import { createGraphicsRenderItem } from '../webgl/render-item';
9
9
  import { AttributeSpec, UniformSpec, GlobalUniformSchema, InternalSchema, TextureSpec, ElementsSpec, DefineSpec, GlobalTextureSchema, BaseSchema } from './schema';
10
10
  import { DirectVolumeShaderCode } from '../shader-code';
11
11
  import { ValueCell } from '../../mol-util';
12
- export var DirectVolumeSchema = __assign(__assign({}, BaseSchema), { aPosition: AttributeSpec('float32', 3, 0), elements: ElementsSpec('uint32'), uColor: UniformSpec('v3'), uColorTexDim: UniformSpec('v2'), tColor: TextureSpec('image-uint8', 'rgb', 'ubyte', 'nearest'), dColorType: DefineSpec('string', ['uniform', 'attribute', 'instance', 'group', 'groupInstance', 'vertex', 'vertexInstance']), uIsoValue: UniformSpec('v2'), uBboxMin: UniformSpec('v3'), uBboxMax: UniformSpec('v3'), uBboxSize: UniformSpec('v3'), uMaxSteps: UniformSpec('i'), uStepScale: UniformSpec('f'), uJumpLength: UniformSpec('f'), uTransform: UniformSpec('m4'), uGridDim: UniformSpec('v3'), dRenderMode: DefineSpec('string', ['isosurface', 'volume']), dSingleLayer: DefineSpec('boolean'), tTransferTex: TextureSpec('image-uint8', 'rgba', 'ubyte', 'linear'), uTransferScale: UniformSpec('f'), dGridTexType: DefineSpec('string', ['2d', '3d']), uGridTexDim: UniformSpec('v3'), tGridTex: TextureSpec('texture', 'rgba', 'ubyte', 'linear'), uGridStats: UniformSpec('v4'), uCellDim: UniformSpec('v3'), uCartnToUnit: UniformSpec('m4'), uUnitToCartn: UniformSpec('m4'), dPackedGroup: DefineSpec('boolean'), dDoubleSided: DefineSpec('boolean'), dFlipSided: DefineSpec('boolean'), dFlatShaded: DefineSpec('boolean'), dIgnoreLight: DefineSpec('boolean'), dXrayShaded: DefineSpec('boolean') });
13
- export function DirectVolumeRenderable(ctx, id, values, state, materialId) {
12
+ export var DirectVolumeSchema = __assign(__assign({}, BaseSchema), { aPosition: AttributeSpec('float32', 3, 0), elements: ElementsSpec('uint32'), uColor: UniformSpec('v3'), uColorTexDim: UniformSpec('v2'), tColor: TextureSpec('image-uint8', 'rgb', 'ubyte', 'nearest'), dColorType: DefineSpec('string', ['uniform', 'attribute', 'instance', 'group', 'groupInstance', 'vertex', 'vertexInstance']), uIsoValue: UniformSpec('v2'), uBboxMin: UniformSpec('v3'), uBboxMax: UniformSpec('v3'), uBboxSize: UniformSpec('v3'), uMaxSteps: UniformSpec('i'), uStepScale: UniformSpec('f'), uJumpLength: UniformSpec('f'), uTransform: UniformSpec('m4'), uGridDim: UniformSpec('v3'), dRenderMode: DefineSpec('string', ['isosurface', 'volume']), dSingleLayer: DefineSpec('boolean'), tTransferTex: TextureSpec('image-uint8', 'rgba', 'ubyte', 'linear'), uTransferScale: UniformSpec('f'), dGridTexType: DefineSpec('string', ['2d', '3d']), uGridTexDim: UniformSpec('v3'), tGridTex: TextureSpec('texture', 'rgba', 'ubyte', 'linear'), uGridStats: UniformSpec('v4'), uCellDim: UniformSpec('v3'), uCartnToUnit: UniformSpec('m4'), uUnitToCartn: UniformSpec('m4'), dPackedGroup: DefineSpec('boolean'), uDoubleSided: UniformSpec('b'), dFlipSided: DefineSpec('boolean'), dFlatShaded: DefineSpec('boolean'), dIgnoreLight: DefineSpec('boolean'), dXrayShaded: DefineSpec('boolean') });
13
+ export function DirectVolumeRenderable(ctx, id, values, state, materialId, variants) {
14
14
  var schema = __assign(__assign(__assign(__assign({}, GlobalUniformSchema), GlobalTextureSchema), InternalSchema), DirectVolumeSchema);
15
15
  if (!ctx.isWebGL2) {
16
16
  // workaround for webgl1 limitation that loop counters need to be `const`
@@ -20,7 +20,7 @@ export function DirectVolumeRenderable(ctx, id, values, state, materialId) {
20
20
  uObjectId: ValueCell.create(id),
21
21
  };
22
22
  var shaderCode = DirectVolumeShaderCode;
23
- var renderItem = createGraphicsRenderItem(ctx, 'triangles', shaderCode, schema, __assign(__assign({}, values), internalValues), materialId);
23
+ var renderItem = createGraphicsRenderItem(ctx, 'triangles', shaderCode, schema, __assign(__assign({}, values), internalValues), materialId, variants);
24
24
  return createRenderable(renderItem, values, state);
25
25
  }
26
26
  //# sourceMappingURL=direct-volume.js.map
@@ -5,6 +5,7 @@
5
5
  */
6
6
  import { Renderable, RenderableState } from '../renderable';
7
7
  import { WebGLContext } from '../webgl/context';
8
+ import { GraphicsRenderVariant } from '../webgl/render-item';
8
9
  import { AttributeSpec, Values, TextureSpec, ElementsSpec, DefineSpec, UniformSpec } from './schema';
9
10
  export declare const ImageSchema: {
10
11
  aGroup: AttributeSpec<"float32">;
@@ -16,11 +17,19 @@ export declare const ImageSchema: {
16
17
  tGroupTex: TextureSpec<"image-uint8">;
17
18
  dInterpolation: DefineSpec<"string">;
18
19
  dLightCount: DefineSpec<"number">;
20
+ dClipObjectCount: DefineSpec<"number">;
21
+ dClipVariant: DefineSpec<"string">;
22
+ uClipObjectType: UniformSpec<"i[]">;
23
+ uClipObjectInvert: UniformSpec<"b[]">;
24
+ uClipObjectPosition: UniformSpec<"v3[]">;
25
+ uClipObjectRotation: UniformSpec<"v4[]">;
26
+ uClipObjectScale: UniformSpec<"v3[]">;
19
27
  aInstance: AttributeSpec<"float32">;
20
28
  aTransform: AttributeSpec<"float32">;
21
29
  uAlpha: UniformSpec<"f">;
22
30
  uMetalness: UniformSpec<"f">;
23
31
  uRoughness: UniformSpec<"f">;
32
+ uBumpiness: UniformSpec<"f">;
24
33
  uVertexCount: UniformSpec<"i">;
25
34
  uInstanceCount: UniformSpec<"i">;
26
35
  uGroupCount: UniformSpec<"i">;
@@ -34,8 +43,6 @@ export declare const ImageSchema: {
34
43
  hasReflection: import("./schema").ValueSpec<"boolean">;
35
44
  boundingSphere: import("./schema").ValueSpec<"sphere">;
36
45
  invariantBoundingSphere: import("./schema").ValueSpec<"sphere">;
37
- dClipObjectCount: DefineSpec<"number">;
38
- dClipVariant: DefineSpec<"string">;
39
46
  uClippingTexDim: UniformSpec<"v2">;
40
47
  tClipping: TextureSpec<"image-uint8">;
41
48
  dClipping: DefineSpec<"boolean">;
@@ -64,7 +71,6 @@ export declare const ImageSchema: {
64
71
  uMarker: UniformSpec<"f">;
65
72
  uMarkerTexDim: UniformSpec<"v2">;
66
73
  tMarker: TextureSpec<"image-uint8">;
67
- dMarkerType: DefineSpec<"string">;
68
74
  markerAverage: import("./schema").ValueSpec<"number">;
69
75
  markerStatus: import("./schema").ValueSpec<"number">;
70
76
  uColor: UniformSpec<"v3">;
@@ -79,4 +85,4 @@ export declare const ImageSchema: {
79
85
  };
80
86
  export declare type ImageSchema = typeof ImageSchema;
81
87
  export declare type ImageValues = Values<ImageSchema>;
82
- export declare function ImageRenderable(ctx: WebGLContext, id: number, values: ImageValues, state: RenderableState, materialId: number): Renderable<ImageValues>;
88
+ export declare function ImageRenderable(ctx: WebGLContext, id: number, values: ImageValues, state: RenderableState, materialId: number, variants: GraphicsRenderVariant[]): Renderable<ImageValues>;
@@ -11,13 +11,13 @@ import { ImageShaderCode } from '../shader-code';
11
11
  import { ValueCell } from '../../mol-util';
12
12
  import { InterpolationTypeNames } from '../../mol-geo/geometry/image/image';
13
13
  export var ImageSchema = __assign(__assign({}, BaseSchema), { aGroup: AttributeSpec('float32', 1, 0), aPosition: AttributeSpec('float32', 3, 0), aUv: AttributeSpec('float32', 2, 0), elements: ElementsSpec('uint32'), uImageTexDim: UniformSpec('v2'), tImageTex: TextureSpec('image-uint8', 'rgba', 'ubyte', 'nearest'), tGroupTex: TextureSpec('image-uint8', 'rgba', 'ubyte', 'nearest'), dInterpolation: DefineSpec('string', InterpolationTypeNames) });
14
- export function ImageRenderable(ctx, id, values, state, materialId) {
14
+ export function ImageRenderable(ctx, id, values, state, materialId, variants) {
15
15
  var schema = __assign(__assign(__assign(__assign({}, GlobalUniformSchema), GlobalTextureSchema), InternalSchema), ImageSchema);
16
16
  var internalValues = {
17
17
  uObjectId: ValueCell.create(id),
18
18
  };
19
19
  var shaderCode = ImageShaderCode;
20
- var renderItem = createGraphicsRenderItem(ctx, 'triangles', shaderCode, schema, __assign(__assign({}, values), internalValues), materialId);
20
+ var renderItem = createGraphicsRenderItem(ctx, 'triangles', shaderCode, schema, __assign(__assign({}, values), internalValues), materialId, variants);
21
21
  return createRenderable(renderItem, values, state);
22
22
  }
23
23
  //# sourceMappingURL=image.js.map