molstar 3.0.0-dev.3 → 3.0.0-dev.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (552) hide show
  1. package/build/viewer/embedded.html +5 -5
  2. package/build/viewer/index.html +25 -17
  3. package/build/viewer/molstar.css +1 -1
  4. package/build/viewer/molstar.js +1 -1
  5. package/lib/apps/docking-viewer/index.d.ts +2 -1
  6. package/lib/apps/docking-viewer/index.html +8 -8
  7. package/lib/apps/docking-viewer/index.js +87 -74
  8. package/lib/apps/docking-viewer/viewport.js +2 -1
  9. package/lib/apps/viewer/embedded.html +5 -5
  10. package/lib/apps/viewer/index.d.ts +36 -215
  11. package/lib/apps/viewer/index.html +25 -17
  12. package/lib/apps/viewer/index.js +139 -52
  13. package/lib/cli/cifschema/index.d.ts +1 -1
  14. package/lib/cli/cifschema/index.js +15 -35
  15. package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
  16. package/lib/commonjs/apps/docking-viewer/index.js +86 -73
  17. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  18. package/lib/commonjs/apps/viewer/index.d.ts +36 -215
  19. package/lib/commonjs/apps/viewer/index.js +139 -52
  20. package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
  21. package/lib/commonjs/cli/cifschema/index.js +15 -35
  22. package/lib/commonjs/examples/alpha-orbitals/index.js +2 -3
  23. package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
  24. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  25. package/lib/commonjs/examples/lighting/index.js +58 -41
  26. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
  27. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
  28. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
  29. package/lib/commonjs/extensions/anvil/behavior.d.ts +7 -0
  30. package/lib/commonjs/extensions/anvil/representation.d.ts +63 -0
  31. package/lib/commonjs/extensions/cellpack/representation.d.ts +13 -0
  32. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +39 -0
  33. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
  34. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
  35. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
  36. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
  37. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
  38. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
  39. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
  40. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
  41. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
  42. package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
  43. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  44. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +7 -0
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
  46. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +13 -0
  47. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
  48. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +65 -0
  49. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +8 -8
  50. package/lib/commonjs/mol-canvas3d/canvas3d.js +12 -4
  51. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
  52. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +7 -0
  53. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  54. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +7 -0
  55. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  56. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +6 -0
  57. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +4 -0
  58. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  59. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -2
  60. package/lib/commonjs/mol-canvas3d/passes/pick.js +9 -9
  61. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  62. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +6 -4
  63. package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
  64. package/lib/commonjs/mol-geo/geometry/base.d.ts +20 -0
  65. package/lib/commonjs/mol-geo/geometry/base.js +20 -1
  66. package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
  67. package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
  68. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +14 -1
  69. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +5 -3
  70. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +11 -0
  71. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +2 -2
  72. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +11 -0
  73. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +12 -0
  74. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  75. package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
  76. package/lib/commonjs/mol-geo/geometry/marker-data.js +0 -4
  77. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +1 -1
  78. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +13 -0
  79. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +5 -3
  80. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +11 -0
  81. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +13 -0
  82. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +5 -3
  83. package/lib/commonjs/mol-geo/geometry/substance-data.js +3 -3
  84. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +11 -0
  85. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +3 -3
  86. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +13 -0
  87. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +5 -3
  88. package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
  89. package/lib/commonjs/mol-gl/render-object.js +10 -10
  90. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +41 -33
  91. package/lib/commonjs/mol-gl/renderable/cylinders.js +4 -4
  92. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +11 -5
  93. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  94. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
  95. package/lib/commonjs/mol-gl/renderable/image.js +2 -2
  96. package/lib/commonjs/mol-gl/renderable/lines.d.ts +38 -32
  97. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  98. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +38 -30
  99. package/lib/commonjs/mol-gl/renderable/mesh.js +4 -4
  100. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
  101. package/lib/commonjs/mol-gl/renderable/points.js +2 -2
  102. package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
  103. package/lib/commonjs/mol-gl/renderable/schema.js +6 -12
  104. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +41 -33
  105. package/lib/commonjs/mol-gl/renderable/spheres.js +4 -4
  106. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
  107. package/lib/commonjs/mol-gl/renderable/text.js +2 -2
  108. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +13 -5
  109. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  110. package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
  111. package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
  112. package/lib/commonjs/mol-gl/renderer.js +12 -74
  113. package/lib/commonjs/mol-gl/scene.d.ts +2 -2
  114. package/lib/commonjs/mol-gl/scene.js +7 -5
  115. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  116. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  117. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  118. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  119. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
  120. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
  121. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  122. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  123. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  124. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  125. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  126. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  129. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
  130. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
  131. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  132. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  133. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +1 -1
  134. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +1 -1
  135. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  136. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  137. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  138. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  139. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  140. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  141. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  142. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  143. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  144. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  145. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  146. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  147. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  148. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  149. package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
  150. package/lib/commonjs/mol-gl/shader-code.js +42 -13
  151. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
  152. package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
  153. package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
  154. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
  155. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
  156. package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
  157. package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
  158. package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
  159. package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
  160. package/lib/commonjs/mol-model/structure/model/model.js +15 -5
  161. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
  162. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
  163. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
  164. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
  165. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
  166. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
  167. package/lib/commonjs/mol-model/structure/model/types.js +9 -0
  168. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
  169. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +26 -0
  170. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +13 -0
  171. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +13 -0
  172. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +39 -0
  173. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +52 -0
  174. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +12 -0
  175. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
  176. package/lib/commonjs/mol-plugin/commands.d.ts +4 -4
  177. package/lib/commonjs/mol-plugin/config.d.ts +2 -0
  178. package/lib/commonjs/mol-plugin/config.js +10 -3
  179. package/lib/commonjs/mol-plugin/spec.js +1 -0
  180. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +21 -0
  181. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
  182. package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
  183. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
  184. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
  185. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
  186. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
  187. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
  188. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
  189. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +15 -1
  190. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
  191. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +54 -0
  192. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +3 -2
  193. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +11 -6
  194. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
  195. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +8 -17
  196. package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
  197. package/lib/commonjs/mol-plugin-ui/index.js +13 -16
  198. package/lib/commonjs/mol-plugin-ui/plugin.d.ts +1 -1
  199. package/lib/commonjs/mol-plugin-ui/plugin.js +76 -10
  200. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
  201. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +13 -0
  202. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +11 -0
  203. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +13 -0
  204. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +11 -0
  205. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +11 -0
  206. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +13 -0
  207. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +13 -0
  208. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +13 -0
  209. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +72 -0
  210. package/lib/commonjs/mol-repr/structure/params.d.ts +96 -0
  211. package/lib/commonjs/mol-repr/structure/registry.d.ts +175 -1
  212. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +39 -0
  213. package/lib/commonjs/mol-repr/structure/representation/backbone.js +2 -1
  214. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +39 -0
  215. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +2 -1
  216. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +39 -0
  217. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +2 -1
  218. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +39 -0
  219. package/lib/commonjs/mol-repr/structure/representation/cartoon.js +2 -1
  220. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +39 -0
  221. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +2 -1
  222. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +39 -0
  223. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +2 -1
  224. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +33 -0
  225. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +36 -3
  226. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +33 -0
  227. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +39 -0
  228. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +2 -1
  229. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +39 -0
  230. package/lib/commonjs/mol-repr/structure/representation/orientation.js +2 -1
  231. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +33 -0
  232. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +39 -0
  233. package/lib/commonjs/mol-repr/structure/representation/putty.js +2 -1
  234. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +39 -0
  235. package/lib/commonjs/mol-repr/structure/representation/spacefill.js +2 -1
  236. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +96 -0
  237. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +26 -0
  238. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +11 -0
  239. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +26 -0
  240. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
  241. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +11 -0
  242. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
  243. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +13 -0
  244. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +13 -0
  245. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +13 -0
  246. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +11 -0
  247. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +11 -0
  248. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +26 -0
  249. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +13 -0
  250. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -0
  251. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +52 -0
  252. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +11 -0
  253. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +13 -2
  254. package/lib/commonjs/mol-repr/structure/visual/label-text.js +2 -2
  255. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +13 -0
  256. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +11 -0
  257. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +13 -0
  258. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +13 -0
  259. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +13 -0
  260. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +26 -0
  261. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +26 -0
  262. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +13 -0
  263. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +13 -0
  264. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +13 -0
  265. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
  266. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +13 -0
  267. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -1
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@@ -75,77 +75,7 @@ export declare const PresetTrajectoryHierarchy: {
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  unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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  structure: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
77
77
  structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
78
- representation: {} | {
79
- components?: undefined;
80
- representations?: undefined;
81
- } | {
82
- components: {
83
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
84
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
85
- };
86
- representations: {
87
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
88
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
89
- };
90
- } | {
91
- components?: undefined;
92
- representations?: undefined;
93
- } | {
94
- components: {
95
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
96
- };
97
- representations: {
98
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
99
- };
100
- } | {
101
- components?: undefined;
102
- representations?: undefined;
103
- } | {
104
- components: {
105
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
106
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
107
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
108
- branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
109
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
110
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
111
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
112
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
113
- };
114
- representations: {
115
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
116
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
117
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
118
- branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
119
- branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
120
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
121
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
122
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
123
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
124
- };
125
- } | {
126
- components?: undefined;
127
- representations?: undefined;
128
- } | {
129
- components: {
130
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
131
- branched: undefined;
132
- };
133
- representations: {
134
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
135
- };
136
- } | {
137
- components?: undefined;
138
- representations?: undefined;
139
- } | {
140
- components: {
141
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
142
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
143
- };
144
- representations: {
145
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
146
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
147
- };
148
- } | undefined;
78
+ representation: any;
149
79
  }>;
150
80
  'all-models': TrajectoryHierarchyPresetProvider<{
151
81
  modelProperties: PD.Normalize<PD.Normalize<{
@@ -169,77 +99,7 @@ export declare const PresetTrajectoryHierarchy: {
169
99
  unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
170
100
  structure: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
171
101
  structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
172
- representation: {} | {
173
- components?: undefined;
174
- representations?: undefined;
175
- } | {
176
- components: {
177
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
178
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
179
- };
180
- representations: {
181
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
182
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
183
- };
184
- } | {
185
- components?: undefined;
186
- representations?: undefined;
187
- } | {
188
- components: {
189
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
190
- };
191
- representations: {
192
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
193
- };
194
- } | {
195
- components?: undefined;
196
- representations?: undefined;
197
- } | {
198
- components: {
199
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
200
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
201
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
202
- branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
203
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
204
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
205
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
206
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
207
- };
208
- representations: {
209
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
210
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
211
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
212
- branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
213
- branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
214
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
215
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
216
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
217
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
218
- };
219
- } | {
220
- components?: undefined;
221
- representations?: undefined;
222
- } | {
223
- components: {
224
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
225
- branched: undefined;
226
- };
227
- representations: {
228
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
229
- };
230
- } | {
231
- components?: undefined;
232
- representations?: undefined;
233
- } | {
234
- components: {
235
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
236
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
237
- };
238
- representations: {
239
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
240
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
241
- };
242
- } | undefined;
102
+ representation: any;
243
103
  } | {
244
104
  models?: undefined;
245
105
  structures?: undefined;
@@ -266,77 +126,7 @@ export declare const PresetTrajectoryHierarchy: {
266
126
  unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
267
127
  structure: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
268
128
  structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
269
- representation: {} | {
270
- components?: undefined;
271
- representations?: undefined;
272
- } | {
273
- components: {
274
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
275
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
276
- };
277
- representations: {
278
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
279
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
280
- };
281
- } | {
282
- components?: undefined;
283
- representations?: undefined;
284
- } | {
285
- components: {
286
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
287
- };
288
- representations: {
289
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
290
- };
291
- } | {
292
- components?: undefined;
293
- representations?: undefined;
294
- } | {
295
- components: {
296
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
297
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
298
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
299
- branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
300
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
301
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
302
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
303
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
304
- };
305
- representations: {
306
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
307
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
308
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
309
- branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
310
- branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
311
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
312
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
313
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
314
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
315
- };
316
- } | {
317
- components?: undefined;
318
- representations?: undefined;
319
- } | {
320
- components: {
321
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
322
- branched: undefined;
323
- };
324
- representations: {
325
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
326
- };
327
- } | {
328
- components?: undefined;
329
- representations?: undefined;
330
- } | {
331
- components: {
332
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
333
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
334
- };
335
- representations: {
336
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
337
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
338
- };
339
- } | undefined;
129
+ representation: any;
340
130
  }>;
341
131
  supercell: TrajectoryHierarchyPresetProvider<{
342
132
  modelProperties: PD.Normalize<PD.Normalize<{
@@ -357,77 +147,7 @@ export declare const PresetTrajectoryHierarchy: {
357
147
  unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
358
148
  structure: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
359
149
  structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
360
- representation: {} | {
361
- components?: undefined;
362
- representations?: undefined;
363
- } | {
364
- components: {
365
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
366
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
367
- };
368
- representations: {
369
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
370
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
371
- };
372
- } | {
373
- components?: undefined;
374
- representations?: undefined;
375
- } | {
376
- components: {
377
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
378
- };
379
- representations: {
380
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
381
- };
382
- } | {
383
- components?: undefined;
384
- representations?: undefined;
385
- } | {
386
- components: {
387
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
388
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
389
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
390
- branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
391
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
392
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
393
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
394
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
395
- };
396
- representations: {
397
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
398
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
399
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
400
- branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
401
- branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
402
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
403
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
404
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
405
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
406
- };
407
- } | {
408
- components?: undefined;
409
- representations?: undefined;
410
- } | {
411
- components: {
412
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
413
- branched: undefined;
414
- };
415
- representations: {
416
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
417
- };
418
- } | {
419
- components?: undefined;
420
- representations?: undefined;
421
- } | {
422
- components: {
423
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
424
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
425
- };
426
- representations: {
427
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
428
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
429
- };
430
- } | undefined;
150
+ representation: any;
431
151
  }>;
432
152
  crystalContacts: TrajectoryHierarchyPresetProvider<{
433
153
  modelProperties: PD.Normalize<PD.Normalize<{
@@ -448,77 +168,7 @@ export declare const PresetTrajectoryHierarchy: {
448
168
  unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
449
169
  structure: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
450
170
  structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
451
- representation: {} | {
452
- components?: undefined;
453
- representations?: undefined;
454
- } | {
455
- components: {
456
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
457
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
458
- };
459
- representations: {
460
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
461
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
462
- };
463
- } | {
464
- components?: undefined;
465
- representations?: undefined;
466
- } | {
467
- components: {
468
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
469
- };
470
- representations: {
471
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
472
- };
473
- } | {
474
- components?: undefined;
475
- representations?: undefined;
476
- } | {
477
- components: {
478
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
479
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
480
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
481
- branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
482
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
483
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
484
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
485
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
486
- };
487
- representations: {
488
- polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
489
- ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
490
- nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
491
- branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
492
- branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
493
- water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
494
- ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
495
- lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
496
- coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
497
- };
498
- } | {
499
- components?: undefined;
500
- representations?: undefined;
501
- } | {
502
- components: {
503
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
504
- branched: undefined;
505
- };
506
- representations: {
507
- all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
508
- };
509
- } | {
510
- components?: undefined;
511
- representations?: undefined;
512
- } | {
513
- components: {
514
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
515
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
516
- };
517
- representations: {
518
- protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
519
- nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
520
- };
521
- } | undefined;
171
+ representation: any;
522
172
  }>;
523
173
  };
524
174
  export declare type PresetTrajectoryHierarchy = typeof PresetTrajectoryHierarchy;
@@ -17,6 +17,7 @@ var linear_algebra_1 = require("../../../mol-math/linear-algebra");
17
17
  var structure_1 = require("../../../mol-model/structure");
18
18
  var util_1 = require("../../../mol-repr/util");
19
19
  var operator_name_1 = require("../../../mol-theme/color/operator-name");
20
+ var config_1 = require("../../../mol-plugin/config");
20
21
  function TrajectoryHierarchyPresetProvider(preset) { return preset; }
21
22
  exports.TrajectoryHierarchyPresetProvider = TrajectoryHierarchyPresetProvider;
22
23
  (function (TrajectoryHierarchyPresetProvider) {
@@ -40,7 +41,7 @@ var defaultPreset = TrajectoryHierarchyPresetProvider({
40
41
  params: DefaultParams,
41
42
  apply: function (trajectory, params, plugin) {
42
43
  return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
43
- var builder, model, modelProperties, structure, structureProperties, unitcell, _a, representation;
44
+ var builder, model, modelProperties, structure, structureProperties, unitcell, _a, representationPreset, representation;
44
45
  return (0, tslib_1.__generator)(this, function (_b) {
45
46
  switch (_b.label) {
46
47
  case 0:
@@ -67,7 +68,8 @@ var defaultPreset = TrajectoryHierarchyPresetProvider({
67
68
  _b.label = 7;
68
69
  case 7:
69
70
  unitcell = _a;
70
- return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, params.representationPreset || 'auto', params.representationPresetParams)];
71
+ representationPreset = params.representationPreset || plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPreset) || representation_preset_1.PresetStructureRepresentations.auto.id;
72
+ return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, representationPreset, params.representationPresetParams)];
71
73
  case 8:
72
74
  representation = _b.sent();
73
75
  return [2 /*return*/, {
@@ -97,7 +99,7 @@ var allModels = TrajectoryHierarchyPresetProvider({
97
99
  apply: function (trajectory, params, plugin) {
98
100
  var _a, _b;
99
101
  return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
100
- var tr, builder, models, structures, i, model, modelProperties, structure, structureProperties, quality;
102
+ var tr, builder, models, structures, i, model, modelProperties, structure, structureProperties, quality, representationPreset;
101
103
  return (0, tslib_1.__generator)(this, function (_c) {
102
104
  switch (_c.label) {
103
105
  case 0:
@@ -128,7 +130,8 @@ var allModels = TrajectoryHierarchyPresetProvider({
128
130
  models.push(model);
129
131
  structures.push(structure);
130
132
  quality = structure.obj ? (0, util_1.getStructureQuality)(structure.obj.data, { elementCountFactor: tr.frameCount }) : 'medium';
131
- return [4 /*yield*/, builder.representation.applyPreset(structureProperties, params.representationPreset || 'auto', { theme: { globalName: 'model-index' }, quality: quality })];
133
+ representationPreset = params.representationPreset || plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPreset) || representation_preset_1.PresetStructureRepresentations.auto.id;
134
+ return [4 /*yield*/, builder.representation.applyPreset(structureProperties, representationPreset, { theme: { globalName: 'model-index' }, quality: quality })];
132
135
  case 6:
133
136
  _c.sent();
134
137
  _c.label = 7;
@@ -144,7 +147,7 @@ var allModels = TrajectoryHierarchyPresetProvider({
144
147
  var CrystalSymmetryParams = function (a, plugin) { return ((0, tslib_1.__assign)({ model: param_definition_1.ParamDefinition.Optional(param_definition_1.ParamDefinition.Group(mol_state_1.StateTransformer.getParamDefinition(transforms_1.StateTransforms.Model.ModelFromTrajectory, a, plugin))) }, CommonParams(a, plugin))); };
145
148
  function applyCrystalSymmetry(props, trajectory, params, plugin) {
146
149
  return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
147
- var builder, model, modelProperties, structure, structureProperties, unitcell, representation;
150
+ var builder, model, modelProperties, structure, structureProperties, unitcell, representationPreset, representation;
148
151
  return (0, tslib_1.__generator)(this, function (_a) {
149
152
  switch (_a.label) {
150
153
  case 0:
@@ -167,7 +170,8 @@ function applyCrystalSymmetry(props, trajectory, params, plugin) {
167
170
  return [4 /*yield*/, builder.tryCreateUnitcell(modelProperties, undefined, { isHidden: false })];
168
171
  case 5:
169
172
  unitcell = _a.sent();
170
- return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, params.representationPreset || 'auto', { theme: { globalName: props.theme } })];
173
+ representationPreset = params.representationPreset || plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPreset) || representation_preset_1.PresetStructureRepresentations.auto.id;
174
+ return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, representationPreset, { theme: { globalName: props.theme } })];
171
175
  case 6:
172
176
  representation = _a.sent();
173
177
  return [2 /*return*/, {
@@ -237,7 +241,7 @@ var crystalContacts = TrajectoryHierarchyPresetProvider({
237
241
  params: CrystalContactsParams,
238
242
  apply: function (trajectory, params, plugin) {
239
243
  return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
240
- var builder, model, modelProperties, structure, structureProperties, unitcell, representation;
244
+ var builder, model, modelProperties, structure, structureProperties, unitcell, representationPreset, representation;
241
245
  return (0, tslib_1.__generator)(this, function (_a) {
242
246
  switch (_a.label) {
243
247
  case 0:
@@ -260,7 +264,8 @@ var crystalContacts = TrajectoryHierarchyPresetProvider({
260
264
  return [4 /*yield*/, builder.tryCreateUnitcell(modelProperties, undefined, { isHidden: true })];
261
265
  case 5:
262
266
  unitcell = _a.sent();
263
- return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, params.representationPreset || 'auto', { theme: { globalName: 'operator-name', carbonColor: 'operator-name', focus: { name: 'element-symbol', params: { carbonColor: { name: 'operator-name', params: operator_name_1.OperatorNameColorThemeProvider.defaultValues } } } } })];
267
+ representationPreset = params.representationPreset || plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPreset) || representation_preset_1.PresetStructureRepresentations.auto.id;
268
+ return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, representationPreset, { theme: { globalName: 'operator-name', carbonColor: 'operator-name', focus: { name: 'element-symbol', params: { carbonColor: { name: 'operator-name', params: operator_name_1.OperatorNameColorThemeProvider.defaultValues } } } } })];
264
269
  case 6:
265
270
  representation = _a.sent();
266
271
  return [2 /*return*/, {