molstar 3.0.0-dev.3 → 3.0.0-dev.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/embedded.html +5 -5
- package/build/viewer/index.html +25 -17
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.d.ts +2 -1
- package/lib/apps/docking-viewer/index.html +8 -8
- package/lib/apps/docking-viewer/index.js +87 -74
- package/lib/apps/docking-viewer/viewport.js +2 -1
- package/lib/apps/viewer/embedded.html +5 -5
- package/lib/apps/viewer/index.d.ts +36 -215
- package/lib/apps/viewer/index.html +25 -17
- package/lib/apps/viewer/index.js +139 -52
- package/lib/cli/cifschema/index.d.ts +1 -1
- package/lib/cli/cifschema/index.js +15 -35
- package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
- package/lib/commonjs/apps/docking-viewer/index.js +86 -73
- package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
- package/lib/commonjs/apps/viewer/index.d.ts +36 -215
- package/lib/commonjs/apps/viewer/index.js +139 -52
- package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
- package/lib/commonjs/cli/cifschema/index.js +15 -35
- package/lib/commonjs/examples/alpha-orbitals/index.js +2 -3
- package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
- package/lib/commonjs/examples/lighting/index.d.ts +1 -1
- package/lib/commonjs/examples/lighting/index.js +58 -41
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
- package/lib/commonjs/extensions/anvil/behavior.d.ts +7 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +63 -0
- package/lib/commonjs/extensions/cellpack/representation.d.ts +13 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +39 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
- package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +7 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +13 -0
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +65 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +8 -8
- package/lib/commonjs/mol-canvas3d/canvas3d.js +12 -4
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +7 -0
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +7 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +6 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -2
- package/lib/commonjs/mol-canvas3d/passes/pick.js +9 -9
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +6 -4
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +20 -0
- package/lib/commonjs/mol-geo/geometry/base.js +20 -1
- package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +14 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +5 -3
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +11 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +2 -2
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +11 -0
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +12 -0
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +0 -4
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +13 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +5 -3
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +11 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +13 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +5 -3
- package/lib/commonjs/mol-geo/geometry/substance-data.js +3 -3
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +11 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +3 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +13 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +5 -3
- package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
- package/lib/commonjs/mol-gl/render-object.js +10 -10
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +41 -33
- package/lib/commonjs/mol-gl/renderable/cylinders.js +4 -4
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
- package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +38 -32
- package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +38 -30
- package/lib/commonjs/mol-gl/renderable/mesh.js +4 -4
- package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/points.js +2 -2
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
- package/lib/commonjs/mol-gl/renderable/schema.js +6 -12
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +41 -33
- package/lib/commonjs/mol-gl/renderable/spheres.js +4 -4
- package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/text.js +2 -2
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +13 -5
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
- package/lib/commonjs/mol-gl/renderer.js +12 -74
- package/lib/commonjs/mol-gl/scene.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +7 -5
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
- package/lib/commonjs/mol-gl/shader-code.js +42 -13
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
- package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
- package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
- package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
- package/lib/commonjs/mol-model/structure/model/model.js +15 -5
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
- package/lib/commonjs/mol-model/structure/model/types.js +9 -0
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +26 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +13 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +13 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +39 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +52 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +12 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
- package/lib/commonjs/mol-plugin/commands.d.ts +4 -4
- package/lib/commonjs/mol-plugin/config.d.ts +2 -0
- package/lib/commonjs/mol-plugin/config.js +10 -3
- package/lib/commonjs/mol-plugin/spec.js +1 -0
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +21 -0
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
- package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +15 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +54 -0
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +3 -2
- package/lib/commonjs/mol-plugin-ui/controls/parameters.js +11 -6
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +8 -17
- package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
- package/lib/commonjs/mol-plugin-ui/index.js +13 -16
- package/lib/commonjs/mol-plugin-ui/plugin.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/plugin.js +76 -10
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +13 -0
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +11 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +13 -0
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +11 -0
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +11 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +13 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +13 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +72 -0
- package/lib/commonjs/mol-repr/structure/params.d.ts +96 -0
- package/lib/commonjs/mol-repr/structure/registry.d.ts +175 -1
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/backbone.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +33 -0
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +36 -3
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +33 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/orientation.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +33 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +39 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.js +2 -1
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +96 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +26 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +11 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +26 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +11 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +11 -0
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +11 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +26 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +52 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +11 -0
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +13 -2
- package/lib/commonjs/mol-repr/structure/visual/label-text.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +11 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +26 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +26 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +13 -0
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -1
- package/lib/commonjs/mol-repr/visual.js +11 -7
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +33 -0
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +76 -0
- package/lib/commonjs/mol-repr/volume/isosurface.js +2 -1
- package/lib/commonjs/mol-repr/volume/registry.d.ts +35 -0
- package/lib/commonjs/mol-repr/volume/representation.d.ts +11 -0
- package/lib/commonjs/mol-repr/volume/slice.d.ts +33 -0
- package/lib/commonjs/mol-theme/clipping.d.ts +7 -15
- package/lib/commonjs/mol-theme/clipping.js +5 -12
- package/lib/commonjs/mol-theme/color/illustrative.d.ts +2 -0
- package/lib/commonjs/mol-theme/color/illustrative.js +2 -2
- package/lib/commonjs/mol-theme/color.d.ts +1 -0
- package/lib/commonjs/mol-util/clip.d.ts +49 -0
- package/lib/commonjs/mol-util/clip.js +97 -0
- package/lib/commonjs/mol-util/material.d.ts +5 -1
- package/lib/commonjs/mol-util/material.js +9 -7
- package/lib/examples/alpha-orbitals/index.html +1 -0
- package/lib/examples/alpha-orbitals/index.js +3 -4
- package/lib/examples/basic-wrapper/index.html +3 -2
- package/lib/examples/basic-wrapper/index.js +24 -12
- package/lib/examples/lighting/index.d.ts +1 -1
- package/lib/examples/lighting/index.html +4 -2
- package/lib/examples/lighting/index.js +59 -42
- package/lib/examples/proteopedia-wrapper/index.html +4 -3
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structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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};
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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};
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} | {
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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};
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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} | {
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protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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};
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} | undefined;
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representation: any;
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} | {
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@@ -266,77 +126,7 @@ export declare const PresetTrajectoryHierarchy: {
|
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266
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unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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@@ -357,77 +147,7 @@ export declare const PresetTrajectoryHierarchy: {
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unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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structure: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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};
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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branched: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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polymer: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ligand: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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nonStandard: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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branchedBallAndStick: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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branchedSnfg3d: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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water: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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ion: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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lipid: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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coarse: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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};
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} | {
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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};
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representations: {
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all: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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};
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protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
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};
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representations: {
|
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|
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protein: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
|
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519
|
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nucleic: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
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};
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} | undefined;
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}>;
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};
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export declare type PresetTrajectoryHierarchy = typeof PresetTrajectoryHierarchy;
|
|
@@ -17,6 +17,7 @@ var linear_algebra_1 = require("../../../mol-math/linear-algebra");
|
|
|
17
17
|
var structure_1 = require("../../../mol-model/structure");
|
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18
18
|
var util_1 = require("../../../mol-repr/util");
|
|
19
19
|
var operator_name_1 = require("../../../mol-theme/color/operator-name");
|
|
20
|
+
var config_1 = require("../../../mol-plugin/config");
|
|
20
21
|
function TrajectoryHierarchyPresetProvider(preset) { return preset; }
|
|
21
22
|
exports.TrajectoryHierarchyPresetProvider = TrajectoryHierarchyPresetProvider;
|
|
22
23
|
(function (TrajectoryHierarchyPresetProvider) {
|
|
@@ -40,7 +41,7 @@ var defaultPreset = TrajectoryHierarchyPresetProvider({
|
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40
41
|
params: DefaultParams,
|
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41
42
|
apply: function (trajectory, params, plugin) {
|
|
42
43
|
return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
|
|
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|
-
var builder, model, modelProperties, structure, structureProperties, unitcell, _a, representation;
|
|
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|
+
var builder, model, modelProperties, structure, structureProperties, unitcell, _a, representationPreset, representation;
|
|
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45
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return (0, tslib_1.__generator)(this, function (_b) {
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46
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|
case 0:
|
|
@@ -67,7 +68,8 @@ var defaultPreset = TrajectoryHierarchyPresetProvider({
|
|
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67
68
|
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|
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case 7:
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69
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|
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representationPreset = params.representationPreset || plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPreset) || representation_preset_1.PresetStructureRepresentations.auto.id;
|
|
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|
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return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, representationPreset, params.representationPresetParams)];
|
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|
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return [2 /*return*/, {
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|
@@ -97,7 +99,7 @@ var allModels = TrajectoryHierarchyPresetProvider({
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98
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101
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var tr, builder, models, structures, i, model, modelProperties, structure, structureProperties, quality;
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var tr, builder, models, structures, i, model, modelProperties, structure, structureProperties, quality, representationPreset;
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case 0:
|
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@@ -128,7 +130,8 @@ var allModels = TrajectoryHierarchyPresetProvider({
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|
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|
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|
|
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|
structures.push(structure);
|
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|
quality = structure.obj ? (0, util_1.getStructureQuality)(structure.obj.data, { elementCountFactor: tr.frameCount }) : 'medium';
|
|
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|
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|
|
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representationPreset = params.representationPreset || plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPreset) || representation_preset_1.PresetStructureRepresentations.auto.id;
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|
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return [4 /*yield*/, builder.representation.applyPreset(structureProperties, representationPreset, { theme: { globalName: 'model-index' }, quality: quality })];
|
|
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|
case 6:
|
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|
_c.sent();
|
|
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|
_c.label = 7;
|
|
@@ -144,7 +147,7 @@ var allModels = TrajectoryHierarchyPresetProvider({
|
|
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|
var CrystalSymmetryParams = function (a, plugin) { return ((0, tslib_1.__assign)({ model: param_definition_1.ParamDefinition.Optional(param_definition_1.ParamDefinition.Group(mol_state_1.StateTransformer.getParamDefinition(transforms_1.StateTransforms.Model.ModelFromTrajectory, a, plugin))) }, CommonParams(a, plugin))); };
|
|
145
148
|
function applyCrystalSymmetry(props, trajectory, params, plugin) {
|
|
146
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|
return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
|
|
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|
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var builder, model, modelProperties, structure, structureProperties, unitcell, representation;
|
|
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|
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var builder, model, modelProperties, structure, structureProperties, unitcell, representationPreset, representation;
|
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|
return (0, tslib_1.__generator)(this, function (_a) {
|
|
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|
switch (_a.label) {
|
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|
case 0:
|
|
@@ -167,7 +170,8 @@ function applyCrystalSymmetry(props, trajectory, params, plugin) {
|
|
|
167
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|
return [4 /*yield*/, builder.tryCreateUnitcell(modelProperties, undefined, { isHidden: false })];
|
|
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|
case 5:
|
|
169
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|
unitcell = _a.sent();
|
|
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|
-
|
|
173
|
+
representationPreset = params.representationPreset || plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPreset) || representation_preset_1.PresetStructureRepresentations.auto.id;
|
|
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|
+
return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, representationPreset, { theme: { globalName: props.theme } })];
|
|
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|
case 6:
|
|
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|
representation = _a.sent();
|
|
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177
|
return [2 /*return*/, {
|
|
@@ -237,7 +241,7 @@ var crystalContacts = TrajectoryHierarchyPresetProvider({
|
|
|
237
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|
params: CrystalContactsParams,
|
|
238
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|
apply: function (trajectory, params, plugin) {
|
|
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243
|
return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
|
|
240
|
-
var builder, model, modelProperties, structure, structureProperties, unitcell, representation;
|
|
244
|
+
var builder, model, modelProperties, structure, structureProperties, unitcell, representationPreset, representation;
|
|
241
245
|
return (0, tslib_1.__generator)(this, function (_a) {
|
|
242
246
|
switch (_a.label) {
|
|
243
247
|
case 0:
|
|
@@ -260,7 +264,8 @@ var crystalContacts = TrajectoryHierarchyPresetProvider({
|
|
|
260
264
|
return [4 /*yield*/, builder.tryCreateUnitcell(modelProperties, undefined, { isHidden: true })];
|
|
261
265
|
case 5:
|
|
262
266
|
unitcell = _a.sent();
|
|
263
|
-
|
|
267
|
+
representationPreset = params.representationPreset || plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPreset) || representation_preset_1.PresetStructureRepresentations.auto.id;
|
|
268
|
+
return [4 /*yield*/, plugin.builders.structure.representation.applyPreset(structureProperties, representationPreset, { theme: { globalName: 'operator-name', carbonColor: 'operator-name', focus: { name: 'element-symbol', params: { carbonColor: { name: 'operator-name', params: operator_name_1.OperatorNameColorThemeProvider.defaultValues } } } } })];
|
|
264
269
|
case 6:
|
|
265
270
|
representation = _a.sent();
|
|
266
271
|
return [2 /*return*/, {
|