molstar 3.0.0-dev.0 → 3.0.0-dev.5

package/lib/commonjs/perf-tests/binary-search.d.ts

@@ -1,23 +0,0 @@
-declare function createData(n: number): number[];
-declare function binarySearchHelper(list: ArrayLike<number>, t: number): number;
-declare function objSearch(obj: any, val: number): boolean;
-declare function setSearch(set: Set<number>, val: number): boolean;
-declare type Mask = {
-    min: number;
-    max: number;
-    mask: ArrayLike<number>;
-};
-declare function maskSearch({ min, max, mask }: Mask, val: number): boolean;
-declare function prepare(list: ArrayLike<number>): {
-    list: ArrayLike<number>;
-    obj: any;
-    set: Set<number>;
-};
-declare function prepareSet(list: ArrayLike<number>): Set<number>;
-declare function prepareObj(list: ArrayLike<number>): any;
-declare function prepareMask(list: ArrayLike<number>): Mask;
-declare function testBinary(list: ArrayLike<number>, points: ArrayLike<number>): number;
-declare function testObj(obj: any, points: ArrayLike<number>): number;
-declare function testSet(set: Set<number>, points: ArrayLike<number>): number;
-declare function testMask(mask: Mask, points: ArrayLike<number>): number;
-declare function run(f: () => number, n: number): void;

package/lib/commonjs/perf-tests/binary-search.js

@@ -1,154 +0,0 @@
-"use strict";
-function createData(n) {
-    var data = []; // new Int32Array(n);
-    var last = (15 * Math.random()) | 0;
-    for (var i = 0; i < n; i++) {
-        data[i] = last;
-        last += (15 * Math.random()) | 0;
-    }
-    return data;
-}
-function binarySearchHelper(list, t) {
-    var min = 0, max = list.length - 1;
-    while (min <= max) {
-        if (min + 11 > max) {
-            for (var i = min; i <= max; i++) {
-                if (t === list[i])
-                    return i;
-            }
-            return -1;
-        }
-        var mid = (min + max) >> 1;
-        var v = list[mid];
-        if (t < v)
-            max = mid - 1;
-        else if (t > v)
-            min = mid + 1;
-        else
-            return mid;
-    }
-    return -1;
-}
-function objSearch(obj, val) {
-    return typeof obj[val] !== 'undefined';
-}
-function setSearch(set, val) {
-    return set.has(val);
-}
-function maskSearch(_a, val) {
-    var min = _a.min, max = _a.max, mask = _a.mask;
-    return val >= min && val <= max && !!mask[val - min];
-}
-function prepare(list) {
-    var obj = Object.create(null), set = new Set();
-    for (var i = 0; i < list.length; i++) {
-        var v = list[i];
-        obj[v] = i;
-        set.add(v);
-    }
-    return { list: list, obj: obj, set: set };
-}
-function prepareSet(list) {
-    var set = new Set();
-    for (var i = 0; i < list.length; i++) {
-        var v = list[i];
-        set.add(v);
-    }
-    return set;
-}
-function prepareObj(list) {
-    var obj = Object.create(null);
-    for (var i = 0; i < list.length; i++) {
-        var v = list[i];
-        obj[v] = i;
-    }
-    return obj;
-}
-function prepareMask(list) {
-    var max = Number.NEGATIVE_INFINITY, min = Number.POSITIVE_INFINITY;
-    for (var i = 0; i < list.length; i++) {
-        var v = list[i];
-        if (max < v)
-            max = v;
-        if (min > v)
-            min = v;
-    }
-    var mask = new Uint8Array(max - min + 1);
-    for (var i = 0; i < list.length; i++) {
-        var v = list[i];
-        mask[v - min] = 1;
-    }
-    return { min: min, max: max, mask: mask };
-}
-function testBinary(list, points) {
-    var r = 0;
-    for (var i = 0, _i = points.length; i < _i; i++) {
-        if (binarySearchHelper(list, points[i]) >= 0)
-            r += points[i];
-    }
-    return r;
-}
-function testObj(obj, points) {
-    var r = 0;
-    for (var i = 0, _i = points.length; i < _i; i++) {
-        if (objSearch(obj, points[i]))
-            r += points[i];
-    }
-    return r;
-}
-function testSet(set, points) {
-    var r = 0;
-    for (var i = 0, _i = points.length; i < _i; i++) {
-        if (setSearch(set, points[i]))
-            r += points[i];
-    }
-    return r;
-}
-function testMask(mask, points) {
-    var r = 0;
-    for (var i = 0, _i = points.length; i < _i; i++) {
-        if (maskSearch(mask, points[i]))
-            r += points[i];
-    }
-    return r;
-}
-function run(f, n) {
-    for (var i = 0; i < n; i++)
-        f();
-}
-(function () {
-    var size = 10000;
-    var list = createData(size);
-    var queryPoints = createData(size);
-    var obj = prepareObj(list);
-    var set = prepareSet(list);
-    var mask = prepareMask(list);
-    console.log('list', testBinary(list, queryPoints));
-    console.log('obj', testObj(obj, queryPoints));
-    console.log('set', testSet(set, queryPoints));
-    console.log('mask', testMask(mask, queryPoints));
-    console.log('----------------------');
-    console.time('obj');
-    run(function () { return testObj(obj, queryPoints); }, 100);
-    console.timeEnd('obj');
-    console.time('set');
-    run(function () { return testSet(set, queryPoints); }, 100);
-    console.timeEnd('set');
-    console.time('bin-search');
-    run(function () { return testBinary(list, queryPoints); }, 100);
-    console.timeEnd('bin-search');
-    console.time('mask-search');
-    run(function () { return testMask(mask, queryPoints); }, 100);
-    console.timeEnd('mask-search');
-    console.log('----------------------');
-    console.time('prepare-obj');
-    run(function () { return prepareObj(list); }, 1);
-    console.timeEnd('prepare-obj');
-    console.time('prepare-set');
-    run(function () { return prepareSet(list).size; }, 1);
-    console.timeEnd('prepare-set');
-    console.time('prepare-mask');
-    run(function () { return prepareMask(list).min; }, 1);
-    console.timeEnd('prepare-mask');
-}());
-//# sourceMappingURL=binary-search.js.map

package/lib/commonjs/perf-tests/binary-search.js.map

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package/lib/commonjs/perf-tests/chunked-array-vs-native.d.ts

@@ -1 +0,0 @@
-export {};

package/lib/commonjs/perf-tests/chunked-array-vs-native.js

@@ -1,43 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-var tslib_1 = require("tslib");
-var B = (0, tslib_1.__importStar)(require("benchmark"));
-var util_1 = require("../mol-data/util");
-function testNative(size) {
-    var xs = new Array(size);
-    for (var i = 0; i < size; i++)
-        xs[i] = i * i;
-    return xs;
-}
-function testChunkedTyped(size, chunk) {
-    var xs = util_1.ChunkedArray.create(Int32Array, 1, chunk);
-    for (var i = 0; i < size; i++)
-        util_1.ChunkedArray.add(xs, i * i);
-    return util_1.ChunkedArray.compact(xs);
-}
-function testChunkedNative(size, chunk) {
-    var xs = util_1.ChunkedArray.create(Array, 1, chunk);
-    for (var i = 0; i < size; i++)
-        util_1.ChunkedArray.add(xs, i * i);
-    return util_1.ChunkedArray.compact(xs);
-}
-var suite = new B.Suite();
-var N = 70000;
-suite
-    .add('native', function () { return testNative(N); })
-    // .add('chunkedT 0.1k', () => testChunkedTyped(N, 100, false))
-    // .add('chunkedT 4k', () => testChunkedTyped(N, 4096, false))
-    .add('chunkedT 4k lin', function () { return testChunkedTyped(N, 4096); })
-    // .add('chunkedT N / 2', () => testChunkedTyped(N, N / 2, false))
-    // .add('chunkedT N', () => testChunkedTyped(N, N, false))
-    // .add('chunkedT 2 * N', () => testChunkedTyped(N, 2 * N, false))
-    .add('chunkedN N', function () { return testChunkedNative(N, N); })
-    .add('chunkedN 0.1k', function () { return testChunkedNative(N, 100); })
-    .add('chunkedN N / 2', function () { return testChunkedNative(N, N / 2); })
-    .add('chunkedN 2 * N', function () { return testChunkedNative(N, 2 * N); })
-    .on('cycle', function (e) {
-    console.log(String(e.target));
-})
-    .run();
-// console.log(testChunkedTyped(10, 16));
-//# sourceMappingURL=chunked-array-vs-native.js.map

package/lib/commonjs/perf-tests/chunked-array-vs-native.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"chunked-array-vs-native.js","sourceRoot":"","sources":["../../../src/perf-tests/chunked-array-vs-native.ts"],"names":[],"mappings":";;;AAAA,wDAA+B;AAC/B,yCAAgD;AAEhD,SAAS,UAAU,CAAC,IAAY;IAC5B,IAAM,EAAE,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,CAAC;IAC3B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE;QAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IAC7C,OAAO,EAAE,CAAC;AACd,CAAC;AAED,SAAS,gBAAgB,CAAC,IAAY,EAAE,KAAa;IACjD,IAAM,EAAE,GAAG,mBAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC;IACrD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE;QAAE,mBAAY,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC3D,OAAO,mBAAY,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;AACpC,CAAC;AAED,SAAS,iBAAiB,CAAC,IAAY,EAAE,KAAa;IAClD,IAAM,EAAE,GAAG,mBAAY,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC;IAChD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE;QAAE,mBAAY,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC3D,OAAO,mBAAY,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;AACpC,CAAC;AAED,IAAM,KAAK,GAAG,IAAI,CAAC,CAAC,KAAK,EAAE,CAAC;AAE5B,IAAM,CAAC,GAAG,KAAK,CAAC;AAEhB,KAAK;KACA,GAAG,CAAC,QAAQ,EAAE,cAAM,OAAA,UAAU,CAAC,CAAC,CAAC,EAAb,CAAa,CAAC;IACnC,+DAA+D;IAC/D,8DAA8D;KAC7D,GAAG,CAAC,iBAAiB,EAAE,cAAM,OAAA,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,EAAzB,CAAyB,CAAC;IACxD,kEAAkE;IAClE,0DAA0D;IAC1D,kEAAkE;KAEjE,GAAG,CAAC,YAAY,EAAE,cAAM,OAAA,iBAAiB,CAAC,CAAC,EAAE,CAAC,CAAC,EAAvB,CAAuB,CAAC;KAChD,GAAG,CAAC,eAAe,EAAE,cAAM,OAAA,iBAAiB,CAAC,CAAC,EAAE,GAAG,CAAC,EAAzB,CAAyB,CAAC;KACrD,GAAG,CAAC,gBAAgB,EAAE,cAAM,OAAA,iBAAiB,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,EAA3B,CAA2B,CAAC;KACxD,GAAG,CAAC,gBAAgB,EAAE,cAAM,OAAA,iBAAiB,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,EAA3B,CAA2B,CAAC;KACxD,EAAE,CAAC,OAAO,EAAE,UAAC,CAAM;IAChB,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC;AAClC,CAAC,CAAC;KACD,GAAG,EAAE,CAAC;AAEX,yCAAyC"}

package/lib/commonjs/perf-tests/cif-encoder.d.ts

@@ -1,6 +0,0 @@
-/**
- * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-export {};

package/lib/commonjs/perf-tests/cif-encoder.js

@@ -1,58 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-var tslib_1 = require("tslib");
-var cif_1 = require("../mol-io/writer/cif");
-var fs = (0, tslib_1.__importStar)(require("fs"));
-var category1fields = [
-    cif_1.CifWriter.Field.str('f1', function (i) { return 'v' + i; }),
-    cif_1.CifWriter.Field.int('f2', function (i) { return i * i; }),
-    cif_1.CifWriter.Field.float('f3', function (i) { return Math.random(); }),
-];
-var category2fields = [
-    cif_1.CifWriter.Field.str('e1', function (i) { return 'v\n' + i; }),
-    cif_1.CifWriter.Field.int('e2', function (i) { return i * i; }),
-    cif_1.CifWriter.Field.float('e3', function (i) { return Math.random(); }),
-];
-function getCat(name) {
-    return {
-        name: name,
-        instance: function (ctx) {
-            return { fields: ctx.fields, source: [{ rowCount: ctx.rowCount }] };
-        }
-    };
-}
-function testText() {
-    var enc = cif_1.CifWriter.createEncoder();
-    var filter = {
-        includeCategory: function (cat) { return true; },
-        includeField: function (cat, field) { return !(cat === 'cat2' && field === 'e2'); }
-    };
-    enc.startDataBlock('test');
-    enc.setFilter(filter);
-    enc.writeCategory(getCat('cat1'), [{ rowCount: 5, fields: category1fields }]);
-    enc.writeCategory(getCat('cat2'), [{ rowCount: 1, fields: category2fields }]);
-    console.log(enc.getData());
-}
-testText();
-function testBinary() {
-    var enc = cif_1.CifWriter.createEncoder({ binary: true });
-    var filter = {
-        includeCategory: function (cat) { return true; },
-        includeField: function (cat, field) { return !(cat === 'cat2' && field === 'e2'); }
-    };
-    enc.startDataBlock('test');
-    enc.setFilter(filter);
-    enc.writeCategory(getCat('cat1'), [{ rowCount: 5, fields: category1fields }]);
-    enc.writeCategory(getCat('cat2'), [{ rowCount: 1, fields: category2fields }]);
-    enc.encode();
-    var data = enc.getData();
-    fs.writeFileSync('e:/test/mol-star/test.bcif', Buffer.from(data));
-    console.log('written binary');
-}
-testBinary();
-//# sourceMappingURL=cif-encoder.js.map

package/lib/commonjs/perf-tests/cif-encoder.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"cif-encoder.js","sourceRoot":"","sources":["../../../src/perf-tests/cif-encoder.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,4CAAiD;AACjD,kDAAyB;AAEzB,IAAM,eAAe,GAAsB;IACvC,eAAS,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,EAAE,UAAA,CAAC,IAAI,OAAA,GAAG,GAAG,CAAC,EAAP,CAAO,CAAC;IACvC,eAAS,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,GAAG,CAAC,EAAL,CAAK,CAAC;IACrC,eAAS,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,EAAE,UAAA,CAAC,IAAI,OAAA,IAAI,CAAC,MAAM,EAAE,EAAb,CAAa,CAAC;CAClD,CAAC;AAEF,IAAM,eAAe,GAAsB;IACvC,eAAS,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,EAAE,UAAA,CAAC,IAAI,OAAA,KAAK,GAAG,CAAC,EAAT,CAAS,CAAC;IACzC,eAAS,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,GAAG,CAAC,EAAL,CAAK,CAAC;IACrC,eAAS,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,EAAE,UAAA,CAAC,IAAI,OAAA,IAAI,CAAC,MAAM,EAAE,EAAb,CAAa,CAAC;CAClD,CAAC;AAEF,SAAS,MAAM,CAAC,IAAY;IACxB,OAAO;QACH,IAAI,MAAA;QACJ,QAAQ,EAAR,UAAS,GAAoD;YACzD,OAAO,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,EAAE,GAAG,CAAC,QAAQ,EAAE,CAAC,EAAE,CAAC;QACxE,CAAC;KACJ,CAAC;AACN,CAAC;AAED,SAAS,QAAQ;IACb,IAAM,GAAG,GAAG,eAAS,CAAC,aAAa,EAAE,CAAC;IAEtC,IAAM,MAAM,GAA8B;QACtC,eAAe,YAAC,GAAG,IAAI,OAAO,IAAI,CAAC,CAAC,CAAC;QACrC,YAAY,YAAC,GAAG,EAAE,KAAK,IAAI,OAAO,CAAC,CAAC,GAAG,KAAK,MAAM,IAAI,KAAK,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC;KAC3E,CAAC;IAEF,GAAG,CAAC,cAAc,CAAC,MAAM,CAAC,CAAC;IAC3B,GAAG,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;IACtB,GAAG,CAAC,aAAa,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC;IAC9E,GAAG,CAAC,aAAa,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC;IAC9E,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC,CAAC;AAC/B,CAAC;AAED,QAAQ,EAAE,CAAC;AAGX,SAAS,UAAU;IACf,IAAM,GAAG,GAAG,eAAS,CAAC,aAAa,CAAC,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;IAEtD,IAAM,MAAM,GAA8B;QACtC,eAAe,YAAC,GAAG,IAAI,OAAO,IAAI,CAAC,CAAC,CAAC;QACrC,YAAY,YAAC,GAAG,EAAE,KAAK,IAAI,OAAO,CAAC,CAAC,GAAG,KAAK,MAAM,IAAI,KAAK,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC;KAC3E,CAAC;IAEF,GAAG,CAAC,cAAc,CAAC,MAAM,CAAC,CAAC;IAC3B,GAAG,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;IACtB,GAAG,CAAC,aAAa,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC;IAC9E,GAAG,CAAC,aAAa,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC;IAC9E,GAAG,CAAC,MAAM,EAAE,CAAC;IACb,IAAM,IAAI,GAAG,GAAG,CAAC,OAAO,EAAgB,CAAC;IACzC,EAAE,CAAC,aAAa,CAAC,4BAA4B,EAAE,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;IAClE,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,CAAC;AAClC,CAAC;AAED,UAAU,EAAE,CAAC"}

package/lib/commonjs/perf-tests/column.d.ts

@@ -1,4 +0,0 @@
-export declare namespace Column {
-    function runMono(): void;
-    function runPoly(): void;
-}

package/lib/commonjs/perf-tests/column.js

@@ -1,78 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.Column = void 0;
-var tslib_1 = require("tslib");
-var B = (0, tslib_1.__importStar)(require("benchmark"));
-var db_1 = require("../mol-data/db");
-var Column;
-(function (Column) {
-    function createData(n) {
-        var ret = new Float32Array(n);
-        for (var i = 0; i < n; i++) {
-            ret[i] = i * i + 1;
-        }
-        return ret;
-    }
-    function raw(xs) {
-        var sum = 0;
-        for (var i = 0, _i = xs.length; i < _i; i++) {
-            sum += xs[i];
-        }
-        return sum;
-    }
-    function column(col) {
-        var sum = 0;
-        for (var i = 0, _i = col.rowCount; i < _i; i++) {
-            sum += col.value(i);
-        }
-        return sum;
-    }
-    function column1(col) {
-        var sum = 0;
-        for (var i = 0, _i = col.rowCount; i < _i; i++) {
-            sum += col.value(i);
-        }
-        return sum;
-    }
-    function val(i) { return i * i + 1; }
-    function runMono() {
-        var suite = new B.Suite();
-        var data = createData(1000);
-        var nativeData = (0, tslib_1.__spreadArray)([], data, true);
-        var col = db_1.Column.ofArray({ array: data, schema: db_1.Column.Schema.float });
-        var lambda = db_1.Column.ofLambda({ value: val, rowCount: data.length, schema: db_1.Column.Schema.float });
-        var cnst = db_1.Column.ofConst(10, data.length, db_1.Column.Schema.float);
-        suite
-            .add('raw', function () { return raw(data); })
-            .add('native raw', function () { return raw(nativeData); })
-            .add('arraycol', function () { return column(col); })
-            .add('arraycol1', function () { return column(col); })
-            .add('const', function () { return column1(cnst); })
-            .add('arraycol2', function () { return column(col); })
-            .add('lambda', function () { return column1(lambda); })
-            .on('cycle', function (e) { return console.log(String(e.target)); })
-            .run();
-    }
-    Column.runMono = runMono;
-    function runPoly() {
-        var suite = new B.Suite();
-        var data = createData(10000);
-        var nativeData = (0, tslib_1.__spreadArray)([], data, true);
-        var col = db_1.Column.ofArray({ array: data, schema: db_1.Column.Schema.float });
-        var lambda = db_1.Column.ofLambda({ value: val, rowCount: data.length, schema: db_1.Column.Schema.float });
-        var cnst = db_1.Column.ofConst(10, data.length, db_1.Column.Schema.float);
-        suite
-            .add('raw', function () { return raw(data); })
-            .add('native raw', function () { return raw(nativeData); })
-            .add('arraycol', function () { return column(col); })
-            .add('const', function () { return column(cnst); })
-            .add('arraycol2', function () { return column(col); })
-            .add('lambda', function () { return column(lambda); })
-            .on('cycle', function (e) { return console.log(String(e.target)); })
-            .run();
-    }
-    Column.runPoly = runPoly;
-})(Column = exports.Column || (exports.Column = {}));
-Column.runMono();
-Column.runPoly();
-//# sourceMappingURL=column.js.map

package/lib/commonjs/perf-tests/column.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"column.js","sourceRoot":"","sources":["../../../src/perf-tests/column.ts"],"names":[],"mappings":";;;;AAAA,wDAA+B;AAC/B,qCAA6C;AAE7C,IAAiB,MAAM,CAuEtB;AAvED,WAAiB,MAAM;IACnB,SAAS,UAAU,CAAC,CAAS;QACzB,IAAM,GAAG,GAAG,IAAI,YAAY,CAAC,CAAC,CAAC,CAAC;QAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;YACxB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;SACtB;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,SAAS,GAAG,CAAC,EAAqB;QAC9B,IAAI,GAAG,GAAG,CAAC,CAAC;QACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YACzC,GAAG,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;SAChB;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,SAAS,MAAM,CAAC,GAAc;QAC1B,IAAI,GAAG,GAAG,CAAC,CAAC;QACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,GAAG,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC5C,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;SACvB;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,SAAS,OAAO,CAAC,GAAc;QAC3B,IAAI,GAAG,GAAG,CAAC,CAAC;QACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,GAAG,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC5C,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;SACvB;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,SAAS,GAAG,CAAC,CAAS,IAAI,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAE7C,SAAgB,OAAO;QACnB,IAAM,KAAK,GAAG,IAAI,CAAC,CAAC,KAAK,EAAE,CAAC;QAC5B,IAAM,IAAI,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;QAC9B,IAAM,UAAU,kCAAO,IAAW,OAAC,CAAC;QACpC,IAAM,GAAG,GAAG,WAAC,CAAC,OAAO,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,WAAC,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC;QAC/D,IAAM,MAAM,GAAG,WAAC,CAAC,QAAQ,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,QAAQ,EAAE,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,WAAC,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC;QACzF,IAAM,IAAI,GAAG,WAAC,CAAC,OAAO,CAAC,EAAE,EAAE,IAAI,CAAC,MAAM,EAAE,WAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QACxD,KAAK;aACA,GAAG,CAAC,KAAK,EAAE,cAAM,OAAA,GAAG,CAAC,IAAI,CAAC,EAAT,CAAS,CAAC;aAC3B,GAAG,CAAC,YAAY,EAAE,cAAM,OAAA,GAAG,CAAC,UAAU,CAAC,EAAf,CAAe,CAAC;aACxC,GAAG,CAAC,UAAU,EAAE,cAAM,OAAA,MAAM,CAAC,GAAG,CAAC,EAAX,CAAW,CAAC;aAClC,GAAG,CAAC,WAAW,EAAE,cAAM,OAAA,MAAM,CAAC,GAAG,CAAC,EAAX,CAAW,CAAC;aACnC,GAAG,CAAC,OAAO,EAAE,cAAM,OAAA,OAAO,CAAC,IAAI,CAAC,EAAb,CAAa,CAAC;aACjC,GAAG,CAAC,WAAW,EAAE,cAAM,OAAA,MAAM,CAAC,GAAG,CAAC,EAAX,CAAW,CAAC;aACnC,GAAG,CAAC,QAAQ,EAAE,cAAM,OAAA,OAAO,CAAC,MAAM,CAAC,EAAf,CAAe,CAAC;aACpC,EAAE,CAAC,OAAO,EAAE,UAAC,CAAM,IAAK,OAAA,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAA7B,CAA6B,CAAC;aACtD,GAAG,EAAE,CAAC;IACf,CAAC;IAjBe,cAAO,UAiBtB,CAAA;IAED,SAAgB,OAAO;QACnB,IAAM,KAAK,GAAG,IAAI,CAAC,CAAC,KAAK,EAAE,CAAC;QAC5B,IAAM,IAAI,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC;QAC/B,IAAM,UAAU,kCAAO,IAAW,OAAC,CAAC;QACpC,IAAM,GAAG,GAAG,WAAC,CAAC,OAAO,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,WAAC,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC;QAC/D,IAAM,MAAM,GAAG,WAAC,CAAC,QAAQ,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,QAAQ,EAAE,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,WAAC,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC;QACzF,IAAM,IAAI,GAAG,WAAC,CAAC,OAAO,CAAC,EAAE,EAAE,IAAI,CAAC,MAAM,EAAE,WAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QACxD,KAAK;aACA,GAAG,CAAC,KAAK,EAAE,cAAM,OAAA,GAAG,CAAC,IAAI,CAAC,EAAT,CAAS,CAAC;aAC3B,GAAG,CAAC,YAAY,EAAE,cAAM,OAAA,GAAG,CAAC,UAAU,CAAC,EAAf,CAAe,CAAC;aACxC,GAAG,CAAC,UAAU,EAAE,cAAM,OAAA,MAAM,CAAC,GAAG,CAAC,EAAX,CAAW,CAAC;aAClC,GAAG,CAAC,OAAO,EAAE,cAAM,OAAA,MAAM,CAAC,IAAI,CAAC,EAAZ,CAAY,CAAC;aAChC,GAAG,CAAC,WAAW,EAAE,cAAM,OAAA,MAAM,CAAC,GAAG,CAAC,EAAX,CAAW,CAAC;aACnC,GAAG,CAAC,QAAQ,EAAE,cAAM,OAAA,MAAM,CAAC,MAAM,CAAC,EAAd,CAAc,CAAC;aACnC,EAAE,CAAC,OAAO,EAAE,UAAC,CAAM,IAAK,OAAA,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAA7B,CAA6B,CAAC;aACtD,GAAG,EAAE,CAAC;IACf,CAAC;IAhBe,cAAO,UAgBtB,CAAA;AACL,CAAC,EAvEgB,MAAM,GAAN,cAAM,KAAN,cAAM,QAuEtB;AAED,MAAM,CAAC,OAAO,EAAE,CAAC;AACjB,MAAM,CAAC,OAAO,EAAE,CAAC"}

package/lib/commonjs/perf-tests/iterators.d.ts

@@ -1,13 +0,0 @@
-export declare namespace Iterators {
-    function forLoop(): number;
-    function forOf(): number;
-    function forEach(): number;
-    function forEachAllParams(): number;
-    function forEachClosure(): number;
-    function forEachClosureAll(): number;
-    function forEachClosureAllFunction(): number;
-    function mutableES6Iterator(): number;
-    function immutableES6Iterator(): number;
-    function mutableIterator(): number;
-    function run(): void;
-}

package/lib/commonjs/perf-tests/iterators.js

@@ -1,215 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.Iterators = void 0;
-var tslib_1 = require("tslib");
-var B = (0, tslib_1.__importStar)(require("benchmark"));
-var iterator_1 = require("../mol-data/iterator");
-function createData(n) {
-    var data = []; // new Int32Array(n);
-    var last = (15 * Math.random()) | 0;
-    for (var i = 0; i < n; i++) {
-        data[i] = last;
-        last += (15 * Math.random()) | 0;
-    }
-    return data;
-}
-var Iterators;
-(function (Iterators) {
-    var data = createData(100000);
-    function forLoop() {
-        var sum = 0;
-        for (var i = 0, _i = data.length; i < _i; i++) {
-            sum += data[i];
-        }
-        return sum;
-    }
-    Iterators.forLoop = forLoop;
-    function forOf() {
-        var sum = 0;
-        for (var _a = 0, data_1 = data; _a < data_1.length; _a++) {
-            var e = data_1[_a];
-            sum += e;
-        }
-        return sum;
-    }
-    Iterators.forOf = forOf;
-    function forEach() {
-        var ctx = { sum: 0 };
-        data.forEach(function (v) { this.sum += v; }, ctx);
-        return ctx.sum;
-    }
-    Iterators.forEach = forEach;
-    function forEachAllParams() {
-        var ctx = { sum: 0 };
-        data.forEach(function (v, _, __) { this.sum += v; }, ctx);
-        return ctx.sum;
-    }
-    Iterators.forEachAllParams = forEachAllParams;
-    function forEachClosure() {
-        var sum = 0;
-        data.forEach(function (v) { return sum += v; });
-        return sum;
-    }
-    Iterators.forEachClosure = forEachClosure;
-    function forEachClosureAll() {
-        var sum = 0;
-        data.forEach(function (v, _, __) { return sum += v; });
-        return sum;
-    }
-    Iterators.forEachClosureAll = forEachClosureAll;
-    function forEachClosureAllFunction() {
-        var sum = 0;
-        data.forEach(function (v, _, __) { sum += v; });
-        return sum;
-    }
-    Iterators.forEachClosureAllFunction = forEachClosureAllFunction;
-    var _MutableES6Iterator = /** @class */ (function () {
-        function _MutableES6Iterator() {
-            this.done = true;
-            this.value = 0;
-            this.xs = void 0;
-            this.index = -1;
-            this.length = 0;
-        }
-        _MutableES6Iterator.prototype[Symbol.iterator] = function () { return this; };
-        ;
-        _MutableES6Iterator.prototype.next = function () {
-            var index = ++this.index;
-            if (index < this.length)
-                this.value = this.xs[index];
-            else
-                this.done = true;
-            return this;
-        };
-        _MutableES6Iterator.prototype.reset = function (xs) {
-            this.value = xs[0];
-            this.length = xs.length;
-            this.done = false;
-            this.xs = xs;
-            this.index = -1;
-            return this;
-        };
-        return _MutableES6Iterator;
-    }());
-    var _ImmutableES6Iterator = /** @class */ (function () {
-        function _ImmutableES6Iterator() {
-            this.done = true;
-            this.value = 0;
-            this.xs = void 0;
-            this.index = -1;
-            this.length = 0;
-        }
-        _ImmutableES6Iterator.prototype[Symbol.iterator] = function () { return this; };
-        ;
-        _ImmutableES6Iterator.prototype.next = function () {
-            var index = ++this.index;
-            if (index < this.length)
-                this.value = this.xs[index];
-            else
-                this.done = true;
-            return { done: this.done, value: this.value };
-        };
-        _ImmutableES6Iterator.prototype.reset = function (xs) {
-            this.value = xs[0];
-            this.length = xs.length;
-            this.done = false;
-            this.xs = xs;
-            this.index = -1;
-            return this;
-        };
-        return _ImmutableES6Iterator;
-    }());
-    function mutableES6Iterator() {
-        var it = new _MutableES6Iterator();
-        var sum = 0;
-        for (var e = it.reset(data).next().value; !it.done; e = it.next().value) {
-            sum += e;
-        }
-        return sum;
-    }
-    Iterators.mutableES6Iterator = mutableES6Iterator;
-    // export function mutableES6IteratorOf() {
-    //     const it = new _ImmutableES6Iterator();
-    //     let sum = 0;
-    //     for (const e of it.reset(data)) {
-    //         sum += e;
-    //     }
-    //     return sum;
-    // }
-    function immutableES6Iterator() {
-        var it = new _ImmutableES6Iterator();
-        var sum = 0;
-        it.reset(data);
-        while (true) {
-            var _a = it.next(), value = _a.value, done = _a.done;
-            if (done)
-                break;
-            sum += value;
-        }
-        return sum;
-    }
-    Iterators.immutableES6Iterator = immutableES6Iterator;
-    var _MutableIterator = /** @class */ (function () {
-        function _MutableIterator() {
-            this.done = true;
-            this.xs = void 0;
-            this.index = -1;
-            this.length = 0;
-        }
-        _MutableIterator.prototype.next = function () {
-            var index = ++this.index;
-            if (index < this.length)
-                return this.xs[index];
-            else {
-                this.done = true;
-                return 0;
-            }
-        };
-        _MutableIterator.prototype.start = function (xs) {
-            this.length = xs.length;
-            this.done = !this.length;
-            this.xs = xs;
-            this.index = 0;
-            return this.done ? 0 : this.xs[0];
-        };
-        return _MutableIterator;
-    }());
-    function mutableIterator() {
-        var it = new _MutableIterator();
-        var sum = 0;
-        for (var e = it.start(data); !it.done; e = it.next()) {
-            sum += e;
-        }
-        return sum;
-    }
-    Iterators.mutableIterator = mutableIterator;
-    function run() {
-        var suite = new B.Suite();
-        suite
-            .add('for', function () { return Iterators.forLoop(); })
-            .add('forOf', function () { return Iterators.forOf(); })
-            .add('forEach', function () { return Iterators.forEach(); })
-            .add('forEach all params', function () { return Iterators.forEachAllParams(); })
-            .add('forEachClosure', function () { return Iterators.forEachClosure(); })
-            .add('forEachClosure all', function () { return Iterators.forEachClosureAll(); })
-            .add('forEachClosure all function', function () { return Iterators.forEachClosureAllFunction(); })
-            .add('mutableIterator ES6', function () { return Iterators.mutableES6Iterator(); })
-            // .add('mutableIteratorOf ES6', () => Iterators.mutableES6IteratorOf())
-            .add('immutableIterator ES6', function () { return Iterators.immutableES6Iterator(); })
-            // .add('immutableIteratorOf ES6', () => Iterators.immutableES6IteratorOf())
-            .add('mutableIterator', function () { return Iterators.mutableIterator(); })
-            .on('cycle', function (e) {
-            console.log(String(e.target));
-        })
-            // .on('complete', function (this: any) {
-            //     console.log('Fastest is ' + this.filter('fastest').map('name'));
-            // })
-            .run();
-    }
-    Iterators.run = run;
-})(Iterators = exports.Iterators || (exports.Iterators = {}));
-var it = iterator_1.Iterator.Array([1, 2, 3]);
-while (it.hasNext) {
-    console.log(it.move());
-}
-//# sourceMappingURL=iterators.js.map

package/lib/commonjs/perf-tests/iterators.js.map

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package/lib/commonjs/perf-tests/lookup3d.d.ts

@@ -1,8 +0,0 @@
-import { Structure } from '../mol-model/structure';
-import { MmcifFormat } from '../mol-model-formats/structure/mmcif';
-export declare function readCIF(path: string): Promise<{
-    mmcif: MmcifFormat.Data;
-    models: import("../mol-model/structure").Trajectory;
-    structures: Structure[];
-}>;
-export declare function test(): Promise<void>;