molstar 3.0.0-dev.0 → 3.0.0-dev.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +187 -176
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +95 -94
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/viewport.js +14 -11
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.html +95 -94
- package/lib/commonjs/apps/docking-viewer/viewport.js +14 -11
- package/lib/commonjs/examples/lighting/index.js +2 -1
- package/lib/commonjs/extensions/anvil/behavior.d.ts +7 -1
- package/lib/commonjs/extensions/anvil/representation.d.ts +18 -5
- package/lib/commonjs/extensions/cellpack/representation.d.ts +4 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +12 -3
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
- package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +7 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +4 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +20 -5
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +6 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +7 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +7 -1
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +3 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +4 -2
- package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -2
- package/lib/commonjs/mol-geo/geometry/base.js +6 -6
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +5 -2
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -2
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +4 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +4 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -2
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +4 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +4 -2
- package/lib/commonjs/mol-geo/geometry/substance-data.js +3 -3
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +3 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +4 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -2
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +31 -28
- package/lib/commonjs/mol-gl/renderable/cylinders.js +2 -2
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/image.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +28 -25
- package/lib/commonjs/mol-gl/renderable/mesh.js +2 -2
- package/lib/commonjs/mol-gl/renderable/points.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/schema.js +3 -3
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +31 -28
- package/lib/commonjs/mol-gl/renderable/spheres.js +2 -2
- package/lib/commonjs/mol-gl/renderable/text.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +3 -0
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-model/structure/model/model.js +7 -3
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +8 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +4 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +4 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +12 -3
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +16 -4
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +2 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-plugin/commands.d.ts +7 -0
- package/lib/commonjs/mol-plugin/config.d.ts +1 -0
- package/lib/commonjs/mol-plugin/config.js +9 -3
- package/lib/commonjs/mol-plugin/state.d.ts +8 -0
- package/lib/commonjs/mol-plugin/state.js +27 -17
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +21 -3
- package/lib/commonjs/mol-plugin-state/helpers/structure-substance.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js +2 -2
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +7 -3
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +62 -11
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +11 -4
- package/lib/commonjs/mol-plugin-ui/controls/parameters.js +22 -5
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +8 -17
- package/lib/commonjs/mol-plugin-ui/plugin.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/plugin.js +76 -10
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +4 -1
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +2 -1
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +4 -1
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +2 -1
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +2 -1
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +4 -1
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +4 -1
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/params.d.ts +24 -8
- package/lib/commonjs/mol-repr/structure/registry.d.ts +49 -15
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/backbone.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/cartoon.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +6 -3
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +9 -6
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +6 -3
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/orientation.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +6 -3
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/putty.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +12 -3
- package/lib/commonjs/mol-repr/structure/representation/spacefill.js +2 -1
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +24 -8
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +8 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +2 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +8 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +2 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +2 -1
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +2 -1
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +8 -2
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +4 -2
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +16 -4
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +2 -1
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +4 -3
- package/lib/commonjs/mol-repr/structure/visual/label-text.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +2 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +8 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +8 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +6 -3
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +22 -6
- package/lib/commonjs/mol-repr/volume/isosurface.js +2 -1
- package/lib/commonjs/mol-repr/volume/registry.d.ts +8 -3
- package/lib/commonjs/mol-repr/volume/representation.d.ts +2 -1
- package/lib/commonjs/mol-repr/volume/slice.d.ts +6 -3
- package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
- package/lib/commonjs/mol-theme/color/illustrative.d.ts +2 -0
- package/lib/commonjs/mol-theme/color/illustrative.js +2 -2
- package/lib/commonjs/mol-theme/color.d.ts +1 -0
- package/lib/commonjs/mol-theme/substance.js +18 -9
- package/lib/commonjs/mol-util/material.d.ts +17 -16
- package/lib/commonjs/mol-util/material.js +19 -27
- package/lib/commonjs/mol-util/param-definition.d.ts +2 -0
- package/lib/commonjs/mol-util/param-definition.js +2 -0
- package/lib/examples/alpha-orbitals/index.html +60 -60
- package/lib/examples/basic-wrapper/index.html +136 -136
- package/lib/examples/lighting/index.html +86 -86
- package/lib/examples/lighting/index.js +2 -1
- package/lib/examples/proteopedia-wrapper/index.html +235 -235
- package/lib/extensions/anvil/behavior.d.ts +7 -1
- package/lib/extensions/anvil/representation.d.ts +18 -5
- package/lib/extensions/cellpack/representation.d.ts +4 -1
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +12 -3
- package/lib/extensions/geo-export/obj-exporter.js +1 -1
- package/lib/extensions/geo-export/usdz-exporter.js +1 -1
- package/lib/extensions/mp4-export/controls.d.ts +1 -0
- package/lib/extensions/mp4-export/controls.js +9 -7
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +7 -1
- package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +4 -1
- package/lib/extensions/rcsb/validation-report/representation.d.ts +20 -5
- package/lib/mol-canvas3d/canvas3d.d.ts +6 -0
- package/lib/mol-canvas3d/canvas3d.js +3 -2
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +7 -1
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +7 -1
- package/lib/mol-canvas3d/helper/helper.d.ts +4 -0
- package/lib/mol-canvas3d/passes/image.d.ts +3 -0
- package/lib/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/mol-canvas3d/passes/postprocessing.js +4 -2
- package/lib/mol-geo/geometry/base.d.ts +3 -2
- package/lib/mol-geo/geometry/base.js +6 -6
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +5 -2
- package/lib/mol-geo/geometry/cylinders/cylinders.js +4 -2
- package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
- package/lib/mol-geo/geometry/image/image.d.ts +2 -1
- package/lib/mol-geo/geometry/lines/lines.d.ts +2 -1
- package/lib/mol-geo/geometry/mesh/color-smoothing.js +1 -1
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +4 -1
- package/lib/mol-geo/geometry/mesh/mesh.js +4 -2
- package/lib/mol-geo/geometry/points/points.d.ts +3 -2
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +4 -1
- package/lib/mol-geo/geometry/spheres/spheres.js +4 -2
- package/lib/mol-geo/geometry/substance-data.js +3 -3
- package/lib/mol-geo/geometry/text/text.d.ts +2 -1
- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +3 -3
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +4 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -2
- package/lib/mol-gl/renderable/cylinders.d.ts +31 -28
- package/lib/mol-gl/renderable/cylinders.js +3 -3
- package/lib/mol-gl/renderable/direct-volume.d.ts +1 -0
- package/lib/mol-gl/renderable/image.d.ts +1 -0
- package/lib/mol-gl/renderable/lines.d.ts +1 -0
- package/lib/mol-gl/renderable/mesh.d.ts +28 -25
- package/lib/mol-gl/renderable/mesh.js +3 -3
- package/lib/mol-gl/renderable/points.d.ts +1 -0
- package/lib/mol-gl/renderable/schema.d.ts +1 -0
- package/lib/mol-gl/renderable/schema.js +3 -3
- package/lib/mol-gl/renderable/spheres.d.ts +31 -28
- package/lib/mol-gl/renderable/spheres.js +3 -3
- package/lib/mol-gl/renderable/text.d.ts +1 -0
- package/lib/mol-gl/renderable/texture-mesh.d.ts +3 -0
- package/lib/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/light-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/mol-model/structure/model/model.js +7 -3
- package/lib/mol-model-formats/shape/ply.d.ts +8 -2
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +4 -1
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +4 -1
- package/lib/mol-model-props/computed/representations/interactions.d.ts +12 -3
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +16 -4
- package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +2 -2
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/mol-plugin/commands.d.ts +7 -0
- package/lib/mol-plugin/config.d.ts +1 -0
- package/lib/mol-plugin/config.js +8 -3
- package/lib/mol-plugin/state.d.ts +8 -0
- package/lib/mol-plugin/state.js +27 -17
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +21 -3
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/helpers/structure-substance.d.ts +1 -1
- package/lib/mol-plugin-state/helpers/structure-substance.js +2 -2
- package/lib/mol-plugin-state/manager/structure/component.d.ts +7 -3
- package/lib/mol-plugin-state/manager/structure/component.js +1 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +62 -11
- package/lib/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/mol-plugin-ui/controls/parameters.d.ts +11 -4
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- package/lib/perf-tests/tasks.js.map +0 -1
- package/lib/perf-tests/test-xtc.d.ts +0 -6
- package/lib/perf-tests/test-xtc.js +0 -37
- package/lib/perf-tests/test-xtc.js.map +0 -1
- package/lib/servers/common/file-handle.js.map +0 -1
- package/lib/servers/common/swagger-ui/index.js.map +0 -1
- package/lib/servers/common/swagger-ui/indexTemplate.js.map +0 -1
- package/lib/servers/common/util.js.map +0 -1
- package/lib/servers/model/config.js.map +0 -1
- package/lib/servers/model/preprocess/converter.js.map +0 -1
- package/lib/servers/model/preprocess/master.js.map +0 -1
- package/lib/servers/model/preprocess/parallel.js.map +0 -1
- package/lib/servers/model/preprocess/preprocess.js.map +0 -1
- package/lib/servers/model/preprocess/util.js.map +0 -1
- package/lib/servers/model/preprocess.js.map +0 -1
- package/lib/servers/model/properties/pdbe.js.map +0 -1
- package/lib/servers/model/properties/providers/pdbe.js.map +0 -1
- package/lib/servers/model/properties/providers/wwpdb.js.map +0 -1
- package/lib/servers/model/properties/wwpdb.js.map +0 -1
- package/lib/servers/model/property-provider.js.map +0 -1
- package/lib/servers/model/query/atoms.js.map +0 -1
- package/lib/servers/model/query/schemas.js.map +0 -1
- package/lib/servers/model/query.js.map +0 -1
- package/lib/servers/model/server/api-local.js.map +0 -1
- package/lib/servers/model/server/api-schema.js.map +0 -1
- package/lib/servers/model/server/api-web-multiple.js.map +0 -1
- package/lib/servers/model/server/api-web.js.map +0 -1
- package/lib/servers/model/server/api.js.map +0 -1
- package/lib/servers/model/server/cache.js.map +0 -1
- package/lib/servers/model/server/jobs.js.map +0 -1
- package/lib/servers/model/server/query.js.map +0 -1
- package/lib/servers/model/server/structure-wrapper.js.map +0 -1
- package/lib/servers/model/server.js.map +0 -1
- package/lib/servers/model/test.js.map +0 -1
- package/lib/servers/model/utils/fetch-props-pdbe.js.map +0 -1
- package/lib/servers/model/utils/fetch-retry.js.map +0 -1
- package/lib/servers/model/utils/tar.js.map +0 -1
- package/lib/servers/model/utils/writer.js.map +0 -1
- package/lib/servers/model/version.js.map +0 -1
- package/lib/servers/plugin-state/api-schema.js.map +0 -1
- package/lib/servers/plugin-state/config.js.map +0 -1
- package/lib/servers/plugin-state/index.js.map +0 -1
- package/lib/servers/plugin-state/version.js.map +0 -1
- package/lib/servers/volume/common/binary-schema.js.map +0 -1
- package/lib/servers/volume/common/data-format.js.map +0 -1
- package/lib/servers/volume/common/file.js.map +0 -1
- package/lib/servers/volume/config.js.map +0 -1
- package/lib/servers/volume/pack/data-model.js.map +0 -1
- package/lib/servers/volume/pack/downsampling.js.map +0 -1
- package/lib/servers/volume/pack/format/ccp4.js.map +0 -1
- package/lib/servers/volume/pack/format/dsn6.js.map +0 -1
- package/lib/servers/volume/pack/format.js.map +0 -1
- package/lib/servers/volume/pack/main.js.map +0 -1
- package/lib/servers/volume/pack/sampling.js.map +0 -1
- package/lib/servers/volume/pack/version.js.map +0 -1
- package/lib/servers/volume/pack/writer.js.map +0 -1
- package/lib/servers/volume/pack.js.map +0 -1
- package/lib/servers/volume/query.js.map +0 -1
- package/lib/servers/volume/server/algebra/box.js.map +0 -1
- package/lib/servers/volume/server/algebra/coordinate.js.map +0 -1
- package/lib/servers/volume/server/api.js.map +0 -1
- package/lib/servers/volume/server/local-api.js.map +0 -1
- package/lib/servers/volume/server/query/compose.js.map +0 -1
- package/lib/servers/volume/server/query/data-model.js.map +0 -1
- package/lib/servers/volume/server/query/encode.js.map +0 -1
- package/lib/servers/volume/server/query/execute.js.map +0 -1
- package/lib/servers/volume/server/query/identify.js.map +0 -1
- package/lib/servers/volume/server/state.js.map +0 -1
- package/lib/servers/volume/server/version.js.map +0 -1
- package/lib/servers/volume/server/web-api.js.map +0 -1
- package/lib/servers/volume/server/web-schema.js.map +0 -1
- package/lib/servers/volume/server.js.map +0 -1
- package/lib/tests/browser/font-atlas.d.ts +0 -6
- package/lib/tests/browser/font-atlas.js +0 -36
- package/lib/tests/browser/font-atlas.js.map +0 -1
- package/lib/tests/browser/index.html +0 -37
- package/lib/tests/browser/marching-cubes.d.ts +0 -6
- package/lib/tests/browser/marching-cubes.js +0 -142
- package/lib/tests/browser/marching-cubes.js.map +0 -1
- package/lib/tests/browser/parse-xtc.d.ts +0 -6
- package/lib/tests/browser/parse-xtc.js +0 -40
- package/lib/tests/browser/parse-xtc.js.map +0 -1
- package/lib/tests/browser/render-lines.d.ts +0 -6
- package/lib/tests/browser/render-lines.js +0 -40
- package/lib/tests/browser/render-lines.js.map +0 -1
- package/lib/tests/browser/render-mesh.d.ts +0 -6
- package/lib/tests/browser/render-mesh.js +0 -49
- package/lib/tests/browser/render-mesh.js.map +0 -1
- package/lib/tests/browser/render-shape.d.ts +0 -7
- package/lib/tests/browser/render-shape.js +0 -164
- package/lib/tests/browser/render-shape.js.map +0 -1
- package/lib/tests/browser/render-spheres.d.ts +0 -6
- package/lib/tests/browser/render-spheres.js +0 -39
- package/lib/tests/browser/render-spheres.js.map +0 -1
- package/lib/tests/browser/render-structure.d.ts +0 -6
- package/lib/tests/browser/render-structure.js +0 -287
- package/lib/tests/browser/render-structure.js.map +0 -1
- package/lib/tests/browser/render-text.d.ts +0 -6
- package/lib/tests/browser/render-text.js +0 -59
- package/lib/tests/browser/render-text.js.map +0 -1
- package/lib/tsconfig.commonjs.tsbuildinfo +0 -1
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cartoon: import("./representation").StructureRepresentationProvider<{
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sizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"polymer-trace" | "polymer-gap" | "nucleotide-block" | "nucleotide-ring" | "direction-wedge">;
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bumpFrequency: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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unitKinds: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"spheres" | "gaussians" | "atomic">;
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includeParent: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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material: import("../../mol-util/param-definition").ParamDefinition.
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material: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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roughness: number;
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}>>;
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radialSegments: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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detail: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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backbone: import("./representation").StructureRepresentationProvider<{
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sizeAspectRatio: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"polymer-gap" | "polymer-backbone-cylinder" | "polymer-backbone-sphere">;
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bumpFrequency: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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sizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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radialSegments: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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unitKinds: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"spheres" | "gaussians" | "atomic">;
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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metalness: number;
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roughness: number;
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bumpiness: number;
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}>>;
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tryUseImpostor: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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detail: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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sizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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sizeAspectRatio: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"element-sphere" | "intra-bond" | "inter-bond">;
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bumpFrequency: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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tryUseImpostor: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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adjustCylinderLength: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
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doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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}>>;
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flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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}, "ball-and-stick">;
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carbohydrate: import("./representation").StructureRepresentationProvider<{
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visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"carbohydrate-symbol" | "carbohydrate-link" | "carbohydrate-terminal-link">;
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bumpFrequency: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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terminalLinkSizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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linkScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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linkSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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}>>;
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linkSizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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linkCap: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
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}, "ellipsoid">;
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visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"gaussian-surface-mesh" | "structure-gaussian-surface-mesh" | "gaussian-surface-wireframe">;
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tryUseGpu: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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}, "gaussian-surface">;
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'gaussian-volume': import("./representation").StructureRepresentationProvider<{
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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}, "line">;
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smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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resolutionFactor: number;
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}, "molecular-surface">;
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orientation: import("./representation").StructureRepresentationProvider<{
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detail: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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unitKinds: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"spheres" | "gaussians" | "atomic">;
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@@ -328,11 +353,13 @@ export declare namespace StructureRepresentationRegistry {
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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material: import("../../mol-util/param-definition").ParamDefinition.
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}>>;
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}, "orientation">;
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point: import("./representation").StructureRepresentationProvider<{
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@@ -345,14 +372,16 @@ export declare namespace StructureRepresentationRegistry {
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pointStyle: import("../../mol-util/param-definition").ParamDefinition.Select<"circle" | "square" | "fuzzy">;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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}>>;
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}, "point">;
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putty: import("./representation").StructureRepresentationProvider<{
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sizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"polymer-gap" | "polymer-tube">;
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bumpFrequency: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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radialSegments: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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unitKinds: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"spheres" | "gaussians" | "atomic">;
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includeParent: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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@@ -361,16 +390,19 @@ export declare namespace StructureRepresentationRegistry {
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
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material: import("../../mol-util/param-definition").ParamDefinition.
|
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|
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material: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
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metalness: number;
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roughness: number;
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|
+
bumpiness: number;
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}>>;
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detail: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
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linearSegments: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
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|
}, "putty">;
|
|
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|
spacefill: import("./representation").StructureRepresentationProvider<{
|
|
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|
+
bumpFrequency: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
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|
sizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
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detail: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
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ignoreHydrogens: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
@@ -381,11 +413,13 @@ export declare namespace StructureRepresentationRegistry {
|
|
|
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|
doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
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|
ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
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|
xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
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|
+
bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
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|
alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
385
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|
quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
386
|
-
material: import("../../mol-util/param-definition").ParamDefinition.
|
|
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|
+
material: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
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|
metalness: number;
|
|
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|
roughness: number;
|
|
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|
+
bumpiness: number;
|
|
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|
}>>;
|
|
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|
flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
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|
flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
@@ -11,6 +11,7 @@ import { Structure } from '../../../mol-model/structure';
|
|
|
11
11
|
export declare const BackboneParams: {
|
|
12
12
|
sizeAspectRatio: PD.Numeric;
|
|
13
13
|
visuals: PD.MultiSelect<"polymer-gap" | "polymer-backbone-cylinder" | "polymer-backbone-sphere">;
|
|
14
|
+
bumpFrequency: PD.Numeric;
|
|
14
15
|
sizeFactor: PD.Numeric;
|
|
15
16
|
radialSegments: PD.Numeric;
|
|
16
17
|
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
@@ -20,11 +21,13 @@ export declare const BackboneParams: {
|
|
|
20
21
|
flatShaded: PD.BooleanParam;
|
|
21
22
|
ignoreLight: PD.BooleanParam;
|
|
22
23
|
xrayShaded: PD.BooleanParam;
|
|
24
|
+
bumpAmplitude: PD.Numeric;
|
|
23
25
|
alpha: PD.Numeric;
|
|
24
26
|
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
25
|
-
material: PD.
|
|
27
|
+
material: PD.Group<PD.Normalize<{
|
|
26
28
|
metalness: number;
|
|
27
29
|
roughness: number;
|
|
30
|
+
bumpiness: number;
|
|
28
31
|
}>>;
|
|
29
32
|
tryUseImpostor: PD.BooleanParam;
|
|
30
33
|
detail: PD.Numeric;
|
|
@@ -33,6 +36,7 @@ export declare type BackboneParams = typeof BackboneParams;
|
|
|
33
36
|
export declare function getBackboneParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
34
37
|
sizeAspectRatio: PD.Numeric;
|
|
35
38
|
visuals: PD.MultiSelect<"polymer-gap" | "polymer-backbone-cylinder" | "polymer-backbone-sphere">;
|
|
39
|
+
bumpFrequency: PD.Numeric;
|
|
36
40
|
sizeFactor: PD.Numeric;
|
|
37
41
|
radialSegments: PD.Numeric;
|
|
38
42
|
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
@@ -42,11 +46,13 @@ export declare function getBackboneParams(ctx: ThemeRegistryContext, structure:
|
|
|
42
46
|
flatShaded: PD.BooleanParam;
|
|
43
47
|
ignoreLight: PD.BooleanParam;
|
|
44
48
|
xrayShaded: PD.BooleanParam;
|
|
49
|
+
bumpAmplitude: PD.Numeric;
|
|
45
50
|
alpha: PD.Numeric;
|
|
46
51
|
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
47
|
-
material: PD.
|
|
52
|
+
material: PD.Group<PD.Normalize<{
|
|
48
53
|
metalness: number;
|
|
49
54
|
roughness: number;
|
|
55
|
+
bumpiness: number;
|
|
50
56
|
}>>;
|
|
51
57
|
tryUseImpostor: PD.BooleanParam;
|
|
52
58
|
detail: PD.Numeric;
|
|
@@ -56,6 +62,7 @@ export declare function BackboneRepresentation(ctx: RepresentationContext, getPa
|
|
|
56
62
|
export declare const BackboneRepresentationProvider: StructureRepresentationProvider<{
|
|
57
63
|
sizeAspectRatio: PD.Numeric;
|
|
58
64
|
visuals: PD.MultiSelect<"polymer-gap" | "polymer-backbone-cylinder" | "polymer-backbone-sphere">;
|
|
65
|
+
bumpFrequency: PD.Numeric;
|
|
59
66
|
sizeFactor: PD.Numeric;
|
|
60
67
|
radialSegments: PD.Numeric;
|
|
61
68
|
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
@@ -65,11 +72,13 @@ export declare const BackboneRepresentationProvider: StructureRepresentationProv
|
|
|
65
72
|
flatShaded: PD.BooleanParam;
|
|
66
73
|
ignoreLight: PD.BooleanParam;
|
|
67
74
|
xrayShaded: PD.BooleanParam;
|
|
75
|
+
bumpAmplitude: PD.Numeric;
|
|
68
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|
alpha: PD.Numeric;
|
|
69
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|
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
70
|
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material: PD.
|
|
78
|
+
material: PD.Group<PD.Normalize<{
|
|
71
79
|
metalness: number;
|
|
72
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|
roughness: number;
|
|
81
|
+
bumpiness: number;
|
|
73
82
|
}>>;
|
|
74
83
|
tryUseImpostor: PD.BooleanParam;
|
|
75
84
|
detail: PD.Numeric;
|
|
@@ -11,12 +11,13 @@ import { StructureRepresentationProvider, StructureRepresentationStateBuilder }
|
|
|
11
11
|
import { Representation } from '../../../mol-repr/representation';
|
|
12
12
|
import { PolymerBackboneSphereParams, PolymerBackboneSphereVisual } from '../visual/polymer-backbone-sphere';
|
|
13
13
|
import { PolymerGapParams, PolymerGapVisual } from '../visual/polymer-gap-cylinder';
|
|
14
|
+
import { BaseGeometry } from '../../../mol-geo/geometry/base';
|
|
14
15
|
var BackboneVisuals = {
|
|
15
16
|
'polymer-backbone-cylinder': function (ctx, getParams) { return UnitsRepresentation('Polymer backbone cylinder', ctx, getParams, PolymerBackboneCylinderVisual); },
|
|
16
17
|
'polymer-backbone-sphere': function (ctx, getParams) { return UnitsRepresentation('Polymer backbone sphere', ctx, getParams, PolymerBackboneSphereVisual); },
|
|
17
18
|
'polymer-gap': function (ctx, getParams) { return UnitsRepresentation('Polymer gap cylinder', ctx, getParams, PolymerGapVisual); },
|
|
18
19
|
};
|
|
19
|
-
export var BackboneParams = __assign(__assign(__assign(__assign({}, PolymerBackboneSphereParams), PolymerBackboneCylinderParams), PolymerGapParams), { sizeAspectRatio: PD.Numeric(1, { min: 0.1, max: 3, step: 0.1 }), visuals: PD.MultiSelect(['polymer-backbone-cylinder', 'polymer-backbone-sphere', 'polymer-gap'], PD.objectToOptions(BackboneVisuals)) });
|
|
20
|
+
export var BackboneParams = __assign(__assign(__assign(__assign({}, PolymerBackboneSphereParams), PolymerBackboneCylinderParams), PolymerGapParams), { sizeAspectRatio: PD.Numeric(1, { min: 0.1, max: 3, step: 0.1 }), visuals: PD.MultiSelect(['polymer-backbone-cylinder', 'polymer-backbone-sphere', 'polymer-gap'], PD.objectToOptions(BackboneVisuals)), bumpFrequency: PD.Numeric(0, { min: 0, max: 10, step: 0.1 }, BaseGeometry.ShadingCategory) });
|
|
20
21
|
export function getBackboneParams(ctx, structure) {
|
|
21
22
|
var params = PD.clone(BackboneParams);
|
|
22
23
|
var hasGaps = false;
|
|
@@ -14,6 +14,7 @@ export declare const BallAndStickParams: {
|
|
|
14
14
|
sizeFactor: PD.Numeric;
|
|
15
15
|
sizeAspectRatio: PD.Numeric;
|
|
16
16
|
visuals: PD.MultiSelect<"element-sphere" | "intra-bond" | "inter-bond">;
|
|
17
|
+
bumpFrequency: PD.Numeric;
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tryUseImpostor: PD.BooleanParam;
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adjustCylinderLength: PD.BooleanParam;
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includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
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@@ -35,11 +36,13 @@ export declare const BallAndStickParams: {
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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-
material: PD.
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+
material: PD.Group<PD.Normalize<{
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metalness: number;
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roughness: number;
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bumpiness: number;
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}>>;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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@@ -53,6 +56,7 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
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sizeFactor: PD.Numeric;
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sizeAspectRatio: PD.Numeric;
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visuals: PD.MultiSelect<"element-sphere" | "intra-bond" | "inter-bond">;
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+
bumpFrequency: PD.Numeric;
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tryUseImpostor: PD.BooleanParam;
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adjustCylinderLength: PD.BooleanParam;
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includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
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@@ -74,11 +78,13 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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-
material: PD.
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+
material: PD.Group<PD.Normalize<{
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metalness: number;
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roughness: number;
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+
bumpiness: number;
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}>>;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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@@ -93,6 +99,7 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
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sizeFactor: PD.Numeric;
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sizeAspectRatio: PD.Numeric;
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visuals: PD.MultiSelect<"element-sphere" | "intra-bond" | "inter-bond">;
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+
bumpFrequency: PD.Numeric;
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tryUseImpostor: PD.BooleanParam;
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adjustCylinderLength: PD.BooleanParam;
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includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
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@@ -114,11 +121,13 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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+
bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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-
material: PD.
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+
material: PD.Group<PD.Normalize<{
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metalness: number;
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roughness: number;
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+
bumpiness: number;
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}>>;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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@@ -13,12 +13,13 @@ import { ComplexRepresentation } from '../complex-representation';
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13
13
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import { StructureRepresentationProvider, StructureRepresentationStateBuilder } from '../representation';
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import { Representation } from '../../../mol-repr/representation';
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import { getUnitKindsParam } from '../params';
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+
import { BaseGeometry } from '../../../mol-geo/geometry/base';
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var BallAndStickVisuals = {
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'element-sphere': function (ctx, getParams) { return UnitsRepresentation('Element sphere', ctx, getParams, ElementSphereVisual); },
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'intra-bond': function (ctx, getParams) { return UnitsRepresentation('Intra-unit bond cylinder', ctx, getParams, IntraUnitBondCylinderVisual); },
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'inter-bond': function (ctx, getParams) { return ComplexRepresentation('Inter-unit bond cylinder', ctx, getParams, InterUnitBondCylinderVisual); },
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|
};
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21
|
-
export var BallAndStickParams = __assign(__assign(__assign(__assign(__assign({}, ElementSphereParams), { traceOnly: PD.Boolean(false, { isHidden: true }) }), IntraUnitBondCylinderParams), InterUnitBondCylinderParams), { includeParent: PD.Boolean(false), unitKinds: getUnitKindsParam(['atomic']), sizeFactor: PD.Numeric(0.15, { min: 0.01, max: 10, step: 0.01 }), sizeAspectRatio: PD.Numeric(2 / 3, { min: 0.01, max: 3, step: 0.01 }), visuals: PD.MultiSelect(['element-sphere', 'intra-bond', 'inter-bond'], PD.objectToOptions(BallAndStickVisuals)) });
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|
22
|
+
export var BallAndStickParams = __assign(__assign(__assign(__assign(__assign({}, ElementSphereParams), { traceOnly: PD.Boolean(false, { isHidden: true }) }), IntraUnitBondCylinderParams), InterUnitBondCylinderParams), { includeParent: PD.Boolean(false), unitKinds: getUnitKindsParam(['atomic']), sizeFactor: PD.Numeric(0.15, { min: 0.01, max: 10, step: 0.01 }), sizeAspectRatio: PD.Numeric(2 / 3, { min: 0.01, max: 3, step: 0.01 }), visuals: PD.MultiSelect(['element-sphere', 'intra-bond', 'inter-bond'], PD.objectToOptions(BallAndStickVisuals)), bumpFrequency: PD.Numeric(0, { min: 0, max: 10, step: 0.1 }, BaseGeometry.ShadingCategory) });
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22
23
|
export function getBallAndStickParams(ctx, structure) {
|
|
23
24
|
return PD.clone(BallAndStickParams);
|
|
24
25
|
}
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|
@@ -10,6 +10,7 @@ import { ParamDefinition as PD } from '../../../mol-util/param-definition';
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|
10
10
|
import { StructureRepresentation, StructureRepresentationProvider } from '../representation';
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|
11
11
|
export declare const CarbohydrateParams: {
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12
12
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visuals: PD.MultiSelect<"carbohydrate-symbol" | "carbohydrate-link" | "carbohydrate-terminal-link">;
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13
|
+
bumpFrequency: PD.Numeric;
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13
14
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terminalLinkSizeFactor: PD.Numeric;
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14
15
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linkScale: PD.Numeric;
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15
16
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linkSpacing: PD.Numeric;
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|
@@ -29,11 +30,13 @@ export declare const CarbohydrateParams: {
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29
30
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flatShaded: PD.BooleanParam;
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30
31
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ignoreLight: PD.BooleanParam;
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31
32
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xrayShaded: PD.BooleanParam;
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|
33
|
+
bumpAmplitude: PD.Numeric;
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34
|
alpha: PD.Numeric;
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|
33
35
|
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
34
|
-
material: PD.
|
|
36
|
+
material: PD.Group<PD.Normalize<{
|
|
35
37
|
metalness: number;
|
|
36
38
|
roughness: number;
|
|
39
|
+
bumpiness: number;
|
|
37
40
|
}>>;
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|
38
41
|
linkSizeFactor: PD.Numeric;
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|
39
42
|
detail: PD.Numeric;
|
|
@@ -42,6 +45,7 @@ export declare const CarbohydrateParams: {
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|
|
42
45
|
export declare type CarbohydrateParams = typeof CarbohydrateParams;
|
|
43
46
|
export declare function getCarbohydrateParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
44
47
|
visuals: PD.MultiSelect<"carbohydrate-symbol" | "carbohydrate-link" | "carbohydrate-terminal-link">;
|
|
48
|
+
bumpFrequency: PD.Numeric;
|
|
45
49
|
terminalLinkSizeFactor: PD.Numeric;
|
|
46
50
|
linkScale: PD.Numeric;
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|
47
51
|
linkSpacing: PD.Numeric;
|
|
@@ -61,11 +65,13 @@ export declare function getCarbohydrateParams(ctx: ThemeRegistryContext, structu
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|
|
61
65
|
flatShaded: PD.BooleanParam;
|
|
62
66
|
ignoreLight: PD.BooleanParam;
|
|
63
67
|
xrayShaded: PD.BooleanParam;
|
|
68
|
+
bumpAmplitude: PD.Numeric;
|
|
64
69
|
alpha: PD.Numeric;
|
|
65
70
|
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
66
|
-
material: PD.
|
|
71
|
+
material: PD.Group<PD.Normalize<{
|
|
67
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|
metalness: number;
|
|
68
73
|
roughness: number;
|
|
74
|
+
bumpiness: number;
|
|
69
75
|
}>>;
|
|
70
76
|
linkSizeFactor: PD.Numeric;
|
|
71
77
|
detail: PD.Numeric;
|
|
@@ -75,6 +81,7 @@ export declare type CarbohydrateRepresentation = StructureRepresentation<Carbohy
|
|
|
75
81
|
export declare function CarbohydrateRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, CarbohydrateParams>): CarbohydrateRepresentation;
|
|
76
82
|
export declare const CarbohydrateRepresentationProvider: StructureRepresentationProvider<{
|
|
77
83
|
visuals: PD.MultiSelect<"carbohydrate-symbol" | "carbohydrate-link" | "carbohydrate-terminal-link">;
|
|
84
|
+
bumpFrequency: PD.Numeric;
|
|
78
85
|
terminalLinkSizeFactor: PD.Numeric;
|
|
79
86
|
linkScale: PD.Numeric;
|
|
80
87
|
linkSpacing: PD.Numeric;
|
|
@@ -94,11 +101,13 @@ export declare const CarbohydrateRepresentationProvider: StructureRepresentation
|
|
|
94
101
|
flatShaded: PD.BooleanParam;
|
|
95
102
|
ignoreLight: PD.BooleanParam;
|
|
96
103
|
xrayShaded: PD.BooleanParam;
|
|
104
|
+
bumpAmplitude: PD.Numeric;
|
|
97
105
|
alpha: PD.Numeric;
|
|
98
106
|
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
99
|
-
material: PD.
|
|
107
|
+
material: PD.Group<PD.Normalize<{
|
|
100
108
|
metalness: number;
|
|
101
109
|
roughness: number;
|
|
110
|
+
bumpiness: number;
|
|
102
111
|
}>>;
|
|
103
112
|
linkSizeFactor: PD.Numeric;
|
|
104
113
|
detail: PD.Numeric;
|
|
@@ -4,6 +4,7 @@
|
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*/
|
|
6
6
|
import { __assign } from "tslib";
|
|
7
|
+
import { BaseGeometry } from '../../../mol-geo/geometry/base';
|
|
7
8
|
import { Model } from '../../../mol-model/structure';
|
|
8
9
|
import { Representation } from '../../../mol-repr/representation';
|
|
9
10
|
import { ParamDefinition as PD } from '../../../mol-util/param-definition';
|
|
@@ -17,7 +18,7 @@ var CarbohydrateVisuals = {
|
|
|
17
18
|
'carbohydrate-link': function (ctx, getParams) { return ComplexRepresentation('Carbohydrate link cylinder', ctx, getParams, CarbohydrateLinkVisual); },
|
|
18
19
|
'carbohydrate-terminal-link': function (ctx, getParams) { return ComplexRepresentation('Carbohydrate terminal link cylinder', ctx, getParams, CarbohydrateTerminalLinkVisual); },
|
|
19
20
|
};
|
|
20
|
-
export var CarbohydrateParams = __assign(__assign(__assign(__assign({}, CarbohydrateSymbolParams), CarbohydrateLinkParams), CarbohydrateTerminalLinkParams), { visuals: PD.MultiSelect(['carbohydrate-symbol', 'carbohydrate-link', 'carbohydrate-terminal-link'], PD.objectToOptions(CarbohydrateVisuals)) });
|
|
21
|
+
export var CarbohydrateParams = __assign(__assign(__assign(__assign({}, CarbohydrateSymbolParams), CarbohydrateLinkParams), CarbohydrateTerminalLinkParams), { visuals: PD.MultiSelect(['carbohydrate-symbol', 'carbohydrate-link', 'carbohydrate-terminal-link'], PD.objectToOptions(CarbohydrateVisuals)), bumpFrequency: PD.Numeric(0, { min: 0, max: 10, step: 0.1 }, BaseGeometry.ShadingCategory) });
|
|
21
22
|
export function getCarbohydrateParams(ctx, structure) {
|
|
22
23
|
return PD.clone(CarbohydrateParams);
|
|
23
24
|
}
|