molstar 3.0.0-dev.0 → 3.0.0-dev.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (2946) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +187 -176
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +94 -94
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/docking-viewer/viewport.js +12 -10
  8. package/lib/apps/viewer/embedded.html +43 -43
  9. package/lib/apps/viewer/index.html +94 -94
  10. package/lib/commonjs/apps/docking-viewer/viewport.js +12 -10
  11. package/lib/commonjs/extensions/anvil/behavior.d.ts +4 -1
  12. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
  13. package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -1
  14. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  15. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -1
  16. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  17. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
  18. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +4 -1
  19. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +4 -1
  20. package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -2
  21. package/lib/commonjs/mol-geo/geometry/base.js +4 -6
  22. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  23. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
  24. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
  25. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
  26. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  27. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  28. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  29. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
  30. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  31. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -2
  32. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  33. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  34. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
  35. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  36. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -2
  37. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  38. package/lib/commonjs/mol-plugin/commands.d.ts +4 -0
  39. package/lib/commonjs/mol-plugin/state.d.ts +8 -0
  40. package/lib/commonjs/mol-plugin/state.js +27 -17
  41. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +12 -3
  42. package/lib/commonjs/mol-plugin-state/helpers/structure-substance.d.ts +1 -1
  43. package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js +2 -2
  44. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +5 -3
  45. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +1 -1
  46. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +40 -11
  47. package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
  48. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +8 -2
  49. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +15 -3
  50. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -1
  51. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +1 -1
  52. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -1
  53. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +1 -1
  54. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +1 -1
  55. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
  56. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
  57. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -1
  58. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +6 -6
  59. package/lib/commonjs/mol-repr/structure/params.d.ts +8 -8
  60. package/lib/commonjs/mol-repr/structure/registry.d.ts +14 -14
  61. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
  62. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
  63. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  64. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -3
  65. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
  66. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
  67. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  68. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +3 -3
  69. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -3
  70. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
  71. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
  72. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -3
  73. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
  74. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
  75. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +8 -8
  76. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
  77. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -1
  78. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
  79. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -1
  80. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  81. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  82. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  83. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -1
  84. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -1
  85. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  86. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  87. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  88. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
  89. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  90. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +1 -1
  91. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
  92. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  93. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  94. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  95. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  96. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  97. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  98. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  99. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  100. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
  101. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  102. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +3 -3
  103. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +6 -6
  104. package/lib/commonjs/mol-repr/volume/registry.d.ts +3 -3
  105. package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
  106. package/lib/commonjs/mol-repr/volume/slice.d.ts +3 -3
  107. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  108. package/lib/commonjs/mol-theme/substance.js +18 -9
  109. package/lib/commonjs/mol-util/material.d.ts +13 -16
  110. package/lib/commonjs/mol-util/material.js +17 -27
  111. package/lib/commonjs/mol-util/param-definition.d.ts +2 -0
  112. package/lib/commonjs/mol-util/param-definition.js +2 -0
  113. package/lib/examples/alpha-orbitals/index.html +60 -60
  114. package/lib/examples/basic-wrapper/index.html +136 -136
  115. package/lib/examples/lighting/index.html +86 -86
  116. package/lib/examples/proteopedia-wrapper/index.html +235 -235
  117. package/lib/extensions/anvil/behavior.d.ts +4 -1
  118. package/lib/extensions/anvil/representation.d.ts +5 -5
  119. package/lib/extensions/cellpack/representation.d.ts +1 -1
  120. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  121. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -1
  122. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  123. package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -5
  124. package/lib/mol-canvas3d/helper/camera-helper.d.ts +4 -1
  125. package/lib/mol-canvas3d/helper/handle-helper.d.ts +4 -1
  126. package/lib/mol-geo/geometry/base.d.ts +1 -2
  127. package/lib/mol-geo/geometry/base.js +4 -6
  128. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  129. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
  130. package/lib/mol-geo/geometry/image/image.d.ts +1 -1
  131. package/lib/mol-geo/geometry/lines/lines.d.ts +1 -1
  132. package/lib/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  133. package/lib/mol-geo/geometry/points/points.d.ts +1 -1
  134. package/lib/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  135. package/lib/mol-geo/geometry/text/text.d.ts +1 -1
  136. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  137. package/lib/mol-model-formats/shape/ply.d.ts +2 -2
  138. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  139. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  140. package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -3
  141. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  142. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -2
  143. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  144. package/lib/mol-plugin/commands.d.ts +4 -0
  145. package/lib/mol-plugin/state.d.ts +8 -0
  146. package/lib/mol-plugin/state.js +27 -17
  147. package/lib/mol-plugin/util/viewport-screenshot.d.ts +12 -3
  148. package/lib/mol-plugin/version.js +2 -2
  149. package/lib/mol-plugin-state/helpers/structure-substance.d.ts +1 -1
  150. package/lib/mol-plugin-state/helpers/structure-substance.js +2 -2
  151. package/lib/mol-plugin-state/manager/structure/component.d.ts +5 -3
  152. package/lib/mol-plugin-state/manager/structure/component.js +1 -1
  153. package/lib/mol-plugin-state/transforms/representation.d.ts +40 -11
  154. package/lib/mol-plugin-state/transforms/representation.js +2 -2
  155. package/lib/mol-plugin-ui/controls/parameters.d.ts +8 -2
  156. package/lib/mol-plugin-ui/controls/parameters.js +16 -4
  157. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  158. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  159. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  160. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  161. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  162. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  163. package/lib/mol-plugin-ui/skin/base/components/misc.scss +616 -616
  164. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  165. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  166. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  167. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  168. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  169. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +127 -127
  170. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  171. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  172. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  173. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  174. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  175. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  176. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  177. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  178. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  179. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  180. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  181. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  182. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  183. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  184. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  185. package/lib/mol-repr/shape/loci/angle.d.ts +1 -1
  186. package/lib/mol-repr/shape/loci/common.d.ts +1 -1
  187. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -1
  188. package/lib/mol-repr/shape/loci/distance.d.ts +1 -1
  189. package/lib/mol-repr/shape/loci/label.d.ts +1 -1
  190. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
  191. package/lib/mol-repr/shape/loci/plane.d.ts +1 -1
  192. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  193. package/lib/mol-repr/structure/complex-visual.d.ts +6 -6
  194. package/lib/mol-repr/structure/params.d.ts +8 -8
  195. package/lib/mol-repr/structure/registry.d.ts +14 -14
  196. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -3
  197. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
  198. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  199. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -3
  200. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
  201. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
  202. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  203. package/lib/mol-repr/structure/representation/label.d.ts +3 -3
  204. package/lib/mol-repr/structure/representation/line.d.ts +3 -3
  205. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
  206. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -3
  207. package/lib/mol-repr/structure/representation/point.d.ts +3 -3
  208. package/lib/mol-repr/structure/representation/putty.d.ts +3 -3
  209. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -3
  210. package/lib/mol-repr/structure/units-visual.d.ts +8 -8
  211. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
  212. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -1
  213. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
  214. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -1
  215. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  216. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  217. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  218. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -1
  219. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -1
  220. package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  221. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  222. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  223. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
  224. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  225. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -1
  226. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
  227. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  228. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  229. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  230. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  231. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  232. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  233. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  234. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  235. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
  236. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  237. package/lib/mol-repr/volume/direct-volume.d.ts +3 -3
  238. package/lib/mol-repr/volume/isosurface.d.ts +6 -6
  239. package/lib/mol-repr/volume/registry.d.ts +3 -3
  240. package/lib/mol-repr/volume/representation.d.ts +1 -1
  241. package/lib/mol-repr/volume/slice.d.ts +3 -3
  242. package/lib/mol-script/language/builder.d.ts +1 -0
  243. package/lib/mol-theme/substance.js +18 -9
  244. package/lib/mol-util/material.d.ts +13 -16
  245. package/lib/mol-util/material.js +17 -27
  246. package/lib/mol-util/param-definition.d.ts +2 -0
  247. package/lib/mol-util/param-definition.js +2 -0
  248. package/package.json +160 -158
  249. package/lib/apps/docking-viewer/index.js.map +0 -1
  250. package/lib/apps/docking-viewer/viewport.js.map +0 -1
  251. package/lib/apps/viewer/index.js.map +0 -1
  252. package/lib/cli/chem-comp-dict/create-ions.js.map +0 -1
  253. package/lib/cli/chem-comp-dict/create-table.js.map +0 -1
  254. package/lib/cli/chem-comp-dict/util.js.map +0 -1
  255. package/lib/cli/cif2bcif/converter.js.map +0 -1
  256. package/lib/cli/cif2bcif/index.js.map +0 -1
  257. package/lib/cli/cifschema/index.js.map +0 -1
  258. package/lib/cli/cifschema/util/cif-dic.js.map +0 -1
  259. package/lib/cli/cifschema/util/generate.js.map +0 -1
  260. package/lib/cli/cifschema/util/helper.js.map +0 -1
  261. package/lib/cli/cifschema/util/schema.js.map +0 -1
  262. package/lib/cli/lipid-params/index.js.map +0 -1
  263. package/lib/cli/state-docs/index.js.map +0 -1
  264. package/lib/cli/state-docs/pd-to-md.js.map +0 -1
  265. package/lib/cli/structure-info/helpers.js.map +0 -1
  266. package/lib/cli/structure-info/model.js.map +0 -1
  267. package/lib/cli/structure-info/volume.js.map +0 -1
  268. package/lib/commonjs/apps/docking-viewer/index.js.map +0 -1
  269. package/lib/commonjs/apps/docking-viewer/viewport.js.map +0 -1
  270. package/lib/commonjs/apps/viewer/index.js.map +0 -1
  271. package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +0 -1
  272. package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +0 -1
  273. package/lib/commonjs/cli/chem-comp-dict/util.js.map +0 -1
  274. package/lib/commonjs/cli/cif2bcif/converter.js.map +0 -1
  275. package/lib/commonjs/cli/cif2bcif/index.js.map +0 -1
  276. package/lib/commonjs/cli/cifschema/index.js.map +0 -1
  277. package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +0 -1
  278. package/lib/commonjs/cli/cifschema/util/generate.js.map +0 -1
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package/lib/mol-gl/webgl/context.js.map DELETED
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package/lib/mol-gl/webgl/program.js.map DELETED
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package/lib/mol-gl/webgl/render-item.js.map DELETED
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package/lib/mol-gl/webgl/render-target.js.map DELETED
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package/lib/mol-gl/webgl/renderbuffer.js.map DELETED
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package/lib/mol-gl/webgl/uniform.js.map DELETED
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package/lib/mol-io/common/msgpack/decode.js.map DELETED
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package/lib/mol-io/common/simple-buffer.js.map DELETED
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@@ -1 +0,0 @@
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- {"version":3,"file":"utf8.js","sourceRoot":"","sources":["../../../src/mol-io/common/utf8.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,MAAM,UAAU,SAAS,CAAC,IAAgB,EAAE,MAAc,EAAE,GAAW;IACnE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACxC,IAAM,SAAS,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;QAEpC,oBAAoB;QACpB,IAAI,SAAS,GAAG,IAAI,EAAE;YAClB,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC;YAC/C,SAAS;SACZ;QAED,qBAAqB;QACrB,IAAI,SAAS,GAAG,KAAK,EAAE;YACnB,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC;YAC/C,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC;YAC/C,SAAS;SACZ;QAED,wBAAwB;QACxB,IAAI,SAAS,GAAG,OAAO,EAAE;YACrB,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,EAAE,GAAG,IAAI,GAAG,IAAI,CAAC;YAChD,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC;YAC/C,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC;YAC/C,SAAS;SACZ;QAED,sBAAsB;QACtB,IAAI,SAAS,GAAG,QAAQ,EAAE;YACtB,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,EAAE,GAAG,IAAI,GAAG,IAAI,CAAC;YAChD,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,EAAE,GAAG,IAAI,GAAG,IAAI,CAAC;YAChD,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC;YAC/C,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,KAAK,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC;YAC/C,SAAS;SACZ;QACD,MAAM,IAAI,KAAK,CAAC,gBAAgB,GAAG,SAAS,CAAC,CAAC;KACjD;AACL,CAAC;AAED,IAAM,OAAO,GAAG;IACZ,IAAM,IAAI,GAAa,EAAE,CAAC;IAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE;QAAE,IAAI,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC;IAChE,OAAO,IAAI,CAAC;AAChB,CAAC,EAAE,CAAC;AAEJ,SAAS,UAAU,CAAC,GAAW;IAC3B,MAAM,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC;AACzB,CAAC;AAED,SAAS,SAAS,CAAC,IAAgB,EAAE,MAAc,EAAE,MAAc;IAC/D,IAAM,KAAK,GAAG,OAAO,CAAC;IACtB,IAAI,GAAG,GAAyB,KAAK,CAAC,EAAE,WAAW,GAAG,CAAC,CAAC;IACxD,IAAM,KAAK,GAAa,EAAE,EAAE,SAAS,GAAG,GAAG,CAAC;IAE5C,KAAK,IAAI,CAAC,GAAG,MAAM,EAAE,GAAG,GAAG,MAAM,GAAG,MAAM,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE;QACtD,IAAM,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;QACrB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,KAAK,IAAI,EAAE;YACxB,qBAAqB;YACrB,KAAK,CAAC,WAAW,EAAE,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC,CAAC;SACtC;aAAM,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,KAAK,IAAI,EAAE;YAC/B,qBAAqB;YACrB,KAAK,CAAC,WAAW,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC;SAC3E;aAAM,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,KAAK,IAAI,EAAE;YAC/B,uBAAuB;YACvB,KAAK,CAAC,WAAW,EAAE,CAAC,GAAG,MAAM,CAAC,YAAY,CACtC,CAAC,CAAC,IAAI,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC;gBACrB,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC;gBACzB,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAC5B,CAAC;SACL;aAAM,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,KAAK,IAAI,EAAE;YAC/B,sBAAsB;YACtB,KAAK,CAAC,WAAW,EAAE,CAAC,GAAG,MAAM,CAAC,YAAY,CACtC,CAAC,CAAC,IAAI,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC;gBACrB,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC;gBAC1B,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC;gBACzB,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAC5B,CAAC;SACL;;YAAM,UAAU,CAAC,eAAe,GAAG,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;QAEvD,IAAI,WAAW,KAAK,SAAS,EAAE;YAC3B,GAAG,GAAG,GAAG,IAAI,EAAE,CAAC;YAChB,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACjC,WAAW,GAAG,CAAC,CAAC;SACnB;KACJ;IACD,IAAI,CAAC,GAAG;QAAE,OAAO,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,WAAW,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACtD,IAAI,WAAW,GAAG,CAAC,EAAE;QACjB,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,WAAW,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;KAC1D;IACD,OAAO,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;AACxB,CAAC;AAED,IAAM,WAAW,GAAG,CAAC,OAAO,WAAW,KAAK,WAAW,CAAC,CAAC,CAAC,CAAC,IAAI,WAAW,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC;AACzF,MAAM,UAAU,QAAQ,CAAC,IAAgB,EAAE,MAAc,EAAE,MAAc;IACrE,IAAI,WAAW,EAAE;QACb,IAAM,KAAK,GAAG,CAAC,MAAM,IAAI,MAAM,KAAK,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QACjG,OAAO,WAAW,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;KACpC;SAAM;QACH,OAAO,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;KAC1C;AACL,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,GAAW;IACrC,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACxC,IAAM,SAAS,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;QACpC,IAAI,SAAS,GAAG,IAAI,EAAE;YAClB,KAAK,IAAI,CAAC,CAAC;YACX,SAAS;SACZ;QACD,IAAI,SAAS,GAAG,KAAK,EAAE;YACnB,KAAK,IAAI,CAAC,CAAC;YACX,SAAS;SACZ;QACD,IAAI,SAAS,GAAG,OAAO,EAAE;YACrB,KAAK,IAAI,CAAC,CAAC;YACX,SAAS;SACZ;QACD,IAAI,SAAS,GAAG,QAAQ,EAAE;YACtB,KAAK,IAAI,CAAC,CAAC;YACX,SAAS;SACZ;QACD,UAAU,CAAC,gBAAgB,GAAG,SAAS,CAAC,CAAC;KAC5C;IACD,OAAO,KAAK,CAAC;AACjB,CAAC"}
package/lib/mol-io/reader/_spec/ccp4.spec.d.ts DELETED
@@ -1,6 +0,0 @@
1
- /**
2
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
- */
6
- export {};
package/lib/mol-io/reader/_spec/ccp4.spec.js DELETED
@@ -1,46 +0,0 @@
1
- /**
2
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
- */
6
- import { __awaiter, __generator } from "tslib";
7
- import * as CCP4 from '../ccp4/parser';
8
- function createCcp4Data() {
9
- var data = new Uint8Array(4 * 256 + 6);
10
- var dv = new DataView(data.buffer);
11
- dv.setInt8(52 * 4, 'M'.charCodeAt(0));
12
- dv.setInt8(52 * 4 + 1, 'A'.charCodeAt(0));
13
- dv.setInt8(52 * 4 + 2, 'P'.charCodeAt(0));
14
- dv.setInt8(52 * 4 + 3, ' '.charCodeAt(0));
15
- dv.setUint8(53 * 4, 17);
16
- dv.setUint8(53 * 4 + 1, 17);
17
- dv.setInt32(0 * 4, 1); // NC
18
- dv.setInt32(1 * 4, 2); // NR
19
- dv.setInt32(2 * 4, 3); // NS
20
- dv.setInt32(3 * 4, 0); // MODE
21
- return data;
22
- }
23
- describe('ccp4 reader', function () {
24
- it('basic', function () { return __awaiter(void 0, void 0, void 0, function () {
25
- var data, parsed, ccp4File, header;
26
- return __generator(this, function (_a) {
27
- switch (_a.label) {
28
- case 0:
29
- data = createCcp4Data();
30
- return [4 /*yield*/, CCP4.parse(data, 'test.ccp4').run()];
31
- case 1:
32
- parsed = _a.sent();
33
- if (parsed.isError) {
34
- throw new Error(parsed.message);
35
- }
36
- ccp4File = parsed.result;
37
- header = ccp4File.header;
38
- expect(header.NC).toBe(1);
39
- expect(header.NR).toBe(2);
40
- expect(header.NS).toBe(3);
41
- return [2 /*return*/];
42
- }
43
- });
44
- }); });
45
- });
46
- //# sourceMappingURL=ccp4.spec.js.map
package/lib/mol-io/reader/_spec/ccp4.spec.js.map DELETED
@@ -1 +0,0 @@
1
- {"version":3,"file":"ccp4.spec.js","sourceRoot":"","sources":["../../../../src/mol-io/reader/_spec/ccp4.spec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,KAAK,IAAI,MAAM,gBAAgB,CAAC;AAEvC,SAAS,cAAc;IACnB,IAAM,IAAI,GAAG,IAAI,UAAU,CAAC,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC;IAEzC,IAAM,EAAE,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAErC,EAAE,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,EAAE,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC;IACtC,EAAE,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1C,EAAE,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1C,EAAE,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC;IAE1C,EAAE,CAAC,QAAQ,CAAC,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC;IACxB,EAAE,CAAC,QAAQ,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC;IAE5B,EAAE,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,KAAK;IAC5B,EAAE,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,KAAK;IAC5B,EAAE,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,KAAK;IAE5B,EAAE,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO;IAE9B,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,QAAQ,CAAC,aAAa,EAAE;IACpB,EAAE,CAAC,OAAO,EAAE;;;;;oBACF,IAAI,GAAG,cAAc,EAAE,CAAC;oBACf,qBAAM,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,WAAW,CAAC,CAAC,GAAG,EAAE,EAAA;;oBAAlD,MAAM,GAAG,SAAyC;oBAExD,IAAI,MAAM,CAAC,OAAO,EAAE;wBAChB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;qBACnC;oBAEK,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC;oBACvB,MAAM,GAAK,QAAQ,OAAb,CAAc;oBAE5B,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;oBAC1B,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;oBAC1B,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;;;;SAC7B,CAAC,CAAC;AACP,CAAC,CAAC,CAAC"}
package/lib/mol-io/reader/_spec/cif.spec.d.ts DELETED
@@ -1,7 +0,0 @@
1
- /**
2
- * Copyright (c) 2017-2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author David Sehnal <david.sehnal@gmail.com>
5
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
- */
7
- export {};
package/lib/mol-io/reader/_spec/cif.spec.js DELETED
@@ -1,73 +0,0 @@
1
- /**
2
- * Copyright (c) 2017-2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author David Sehnal <david.sehnal@gmail.com>
5
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
- */
7
- import { __awaiter, __generator } from "tslib";
8
- import * as Data from '../cif/data-model';
9
- import * as Schema from '../cif/schema';
10
- import { Column } from '../../../mol-data/db';
11
- import { parseCifText } from '../cif/text/parser';
12
- var columnData = "123abc d,e,f '4 5 6'";
13
- // 123abc d,e,f '4 5 6'
14
- var intField = Data.CifField.ofTokens({ data: columnData, indices: [0, 1, 1, 2, 2, 3], count: 3 });
15
- var strField = Data.CifField.ofTokens({ data: columnData, indices: [3, 4, 4, 5, 5, 6], count: 3 });
16
- var strListField = Data.CifField.ofTokens({ data: columnData, indices: [7, 12], count: 1 });
17
- var intListField = Data.CifField.ofTokens({ data: columnData, indices: [14, 19], count: 1 });
18
- var testBlock = Data.CifBlock(['test'], {
19
- test: Data.CifCategory('test', 3, ['int', 'str', 'strList', 'intList'], {
20
- int: intField,
21
- str: strField,
22
- strList: strListField,
23
- intList: intListField
24
- })
25
- }, 'test');
26
- var TestSchema;
27
- (function (TestSchema) {
28
- TestSchema.test = {
29
- int: Column.Schema.int,
30
- str: Column.Schema.str,
31
- strList: Column.Schema.List(',', function (x) { return x; }),
32
- intList: Column.Schema.List(' ', function (x) { return parseInt(x, 10); })
33
- };
34
- TestSchema.schema = { test: TestSchema.test };
35
- })(TestSchema || (TestSchema = {}));
36
- test('cif triple quote', function () { return __awaiter(void 0, void 0, void 0, function () {
37
- var data, result, cat;
38
- return __generator(this, function (_a) {
39
- switch (_a.label) {
40
- case 0:
41
- data = "data_test\n_test.field1 '''123 \" '' 1'''\n_test.field2 ''' c glide reflection through the plane (x,1/4,z)\nchosen as one of the generators of the space group'''";
42
- return [4 /*yield*/, parseCifText(data).run()];
43
- case 1:
44
- result = _a.sent();
45
- if (result.isError) {
46
- expect(false).toBe(true);
47
- return [2 /*return*/];
48
- }
49
- cat = result.result.blocks[0].categories['test'];
50
- expect(cat.getField('field1').str(0)).toBe("123 \" '' 1");
51
- expect(cat.getField('field2').str(0)).toBe(" c glide reflection through the plane (x,1/4,z)\nchosen as one of the generators of the space group");
52
- return [2 /*return*/];
53
- }
54
- });
55
- }); });
56
- describe('schema', function () {
57
- var db = Schema.toDatabase(TestSchema.schema, testBlock);
58
- it('property access', function () {
59
- var _a = db.test, int = _a.int, str = _a.str, strList = _a.strList, intList = _a.intList;
60
- expect(int.value(0)).toBe(1);
61
- expect(str.value(1)).toBe('b');
62
- expect(strList.value(0)).toEqual(['d', 'e', 'f']);
63
- expect(intList.value(0)).toEqual([4, 5, 6]);
64
- });
65
- it('toArray', function () {
66
- var ret = db.test.int.toArray({ array: Int32Array });
67
- expect(ret.length).toBe(3);
68
- expect(ret[0]).toBe(1);
69
- expect(ret[1]).toBe(2);
70
- expect(ret[2]).toBe(3);
71
- });
72
- });
73
- //# sourceMappingURL=cif.spec.js.map
package/lib/mol-io/reader/_spec/cif.spec.js.map DELETED
@@ -1 +0,0 @@
1
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package/lib/mol-io/reader/_spec/column.spec.d.ts DELETED
@@ -1,7 +0,0 @@
1
- /**
2
- * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
- * @author David Sehnal <david.sehnal@gmail.com>
6
- */
7
- export {};