molstar 2.3.9 → 3.0.0-dev.10

package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js.map

@@ -1 +0,0 @@
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package/lib/mol-repr/structure/visual/label-text.js.map

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package/lib/mol-repr/structure/visual/molecular-surface-mesh.js.map

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package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js.map

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package/lib/mol-repr/structure/visual/nucleotide-block-mesh.js.map

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package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.js.map

@@ -1 +0,0 @@
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package/lib/mol-repr/structure/visual/orientation-axes-mesh.d.ts

@@ -1,35 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { ParamDefinition as PD } from '../../../mol-util/param-definition';
-import { UnitsVisual } from '../units-visual';
-import { VisualContext } from '../../visual';
-import { Unit, Structure } from '../../../mol-model/structure';
-import { Theme } from '../../../mol-theme/theme';
-import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
-export declare const OrientationAxesMeshParams: {
-    sizeFactor: PD.Numeric;
-    axesScale: PD.Numeric;
-    radialSegments: PD.Numeric;
-    detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
-    includeParent: PD.BooleanParam;
-    doubleSided: PD.BooleanParam;
-    flipSided: PD.BooleanParam;
-    flatShaded: PD.BooleanParam;
-    ignoreLight: PD.BooleanParam;
-    xrayShaded: PD.BooleanParam;
-    alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-};
-export declare type OrientationAxesMeshParams = typeof OrientationAxesMeshParams;
-export declare function OrientationAxesMeshVisual(materialId: number): UnitsVisual<OrientationAxesMeshParams>;
-export interface OrientationAxesMeshProps {
-    detail: number;
-    radialSegments: number;
-    sizeFactor: number;
-    axesScale: number;
-}
-export declare function createOrientationAxesMesh(ctx: VisualContext, unit: Unit, structure: Structure, theme: Theme, props: OrientationAxesMeshProps, mesh?: Mesh): Mesh;

package/lib/mol-repr/structure/visual/orientation-axes-mesh.js

@@ -1,43 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { __assign } from "tslib";
-import { ParamDefinition as PD } from '../../../mol-util/param-definition';
-import { UnitsMeshParams, UnitsMeshVisual } from '../units-visual';
-import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
-import { MeshBuilder } from '../../../mol-geo/geometry/mesh/mesh-builder';
-import { addAxes } from '../../../mol-geo/geometry/mesh/builder/axes';
-import { Sphere3D } from '../../../mol-math/geometry';
-import { BaseGeometry } from '../../../mol-geo/geometry/base';
-import { eachUnit, getUnitLoci, isUnitApplicable, UnitIterator } from './util/orientation';
-export var OrientationAxesMeshParams = __assign(__assign({}, UnitsMeshParams), { sizeFactor: PD.Numeric(1, { min: 0, max: 2, step: 0.1 }), axesScale: PD.Numeric(1, { min: 0, max: 20, step: 0.1 }), radialSegments: PD.Numeric(16, { min: 2, max: 56, step: 2 }, BaseGeometry.CustomQualityParamInfo), detail: PD.Numeric(0, { min: 0, max: 3, step: 1 }, BaseGeometry.CustomQualityParamInfo) });
-export function OrientationAxesMeshVisual(materialId) {
-    return UnitsMeshVisual({
-        defaultProps: PD.getDefaultValues(OrientationAxesMeshParams),
-        createGeometry: createOrientationAxesMesh,
-        createLocationIterator: UnitIterator,
-        getLoci: getUnitLoci,
-        eachLocation: eachUnit,
-        setUpdateState: function (state, newProps, currentProps) {
-            state.createGeometry = (newProps.sizeFactor !== currentProps.sizeFactor ||
-                newProps.detail !== currentProps.detail);
-        }
-    }, materialId);
-}
-export function createOrientationAxesMesh(ctx, unit, structure, theme, props, mesh) {
-    if (!isUnitApplicable(unit))
-        return Mesh.createEmpty(mesh);
-    var detail = props.detail, sizeFactor = props.sizeFactor, radialSegments = props.radialSegments, axesScale = props.axesScale;
-    var vertexCount = 256;
-    var builderState = MeshBuilder.createState(vertexCount, vertexCount / 2, mesh);
-    var axes = unit.principalAxes.momentsAxes;
-    builderState.currentGroup = 0;
-    addAxes(builderState, axes, axesScale, detail, radialSegments);
-    var m = MeshBuilder.getMesh(builderState);
-    var sphere = Sphere3D.expand(Sphere3D(), unit.boundary.sphere, 1 * props.sizeFactor);
-    m.setBoundingSphere(sphere);
-    return m;
-}
-//# sourceMappingURL=orientation-axes-mesh.js.map

package/lib/mol-repr/structure/visual/orientation-axes-mesh.js.map

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package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.d.ts

@@ -1,31 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { ParamDefinition as PD } from '../../../mol-util/param-definition';
-import { UnitsVisual } from '../../../mol-repr/structure/units-visual';
-import { VisualContext } from '../../../mol-repr/visual';
-import { Unit, Structure } from '../../../mol-model/structure';
-import { Theme } from '../../../mol-theme/theme';
-import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
-export declare const OrientationEllipsoidMeshParams: {
-    sizeFactor: PD.Numeric;
-    detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
-    includeParent: PD.BooleanParam;
-    doubleSided: PD.BooleanParam;
-    flipSided: PD.BooleanParam;
-    flatShaded: PD.BooleanParam;
-    ignoreLight: PD.BooleanParam;
-    xrayShaded: PD.BooleanParam;
-    alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-};
-export declare type OrientationEllipsoidMeshParams = typeof OrientationEllipsoidMeshParams;
-export declare function OrientationEllipsoidMeshVisual(materialId: number): UnitsVisual<OrientationEllipsoidMeshParams>;
-export interface OrientationEllipsoidMeshProps {
-    detail: number;
-    sizeFactor: number;
-}
-export declare function createOrientationEllipsoidMesh(ctx: VisualContext, unit: Unit, structure: Structure, theme: Theme, props: OrientationEllipsoidMeshProps, mesh?: Mesh): Mesh;

package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js

@@ -1,48 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { __assign } from "tslib";
-import { ParamDefinition as PD } from '../../../mol-util/param-definition';
-import { UnitsMeshParams, UnitsMeshVisual } from '../../../mol-repr/structure/units-visual';
-import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
-import { MeshBuilder } from '../../../mol-geo/geometry/mesh/mesh-builder';
-import { Vec3 } from '../../../mol-math/linear-algebra';
-import { addEllipsoid } from '../../../mol-geo/geometry/mesh/builder/ellipsoid';
-import { Axes3D, Sphere3D } from '../../../mol-math/geometry';
-import { BaseGeometry } from '../../../mol-geo/geometry/base';
-import { eachUnit, getUnitLoci, isUnitApplicable, UnitIterator } from './util/orientation';
-export var OrientationEllipsoidMeshParams = __assign(__assign({}, UnitsMeshParams), { sizeFactor: PD.Numeric(1, { min: 0, max: 2, step: 0.1 }), detail: PD.Numeric(0, { min: 0, max: 3, step: 1 }, BaseGeometry.CustomQualityParamInfo) });
-export function OrientationEllipsoidMeshVisual(materialId) {
-    return UnitsMeshVisual({
-        defaultProps: PD.getDefaultValues(OrientationEllipsoidMeshParams),
-        createGeometry: createOrientationEllipsoidMesh,
-        createLocationIterator: UnitIterator,
-        getLoci: getUnitLoci,
-        eachLocation: eachUnit,
-        setUpdateState: function (state, newProps, currentProps) {
-            state.createGeometry = (newProps.sizeFactor !== currentProps.sizeFactor ||
-                newProps.detail !== currentProps.detail);
-        }
-    }, materialId);
-}
-export function createOrientationEllipsoidMesh(ctx, unit, structure, theme, props, mesh) {
-    if (!isUnitApplicable(unit))
-        return Mesh.createEmpty(mesh);
-    var detail = props.detail, sizeFactor = props.sizeFactor;
-    var vertexCount = 256;
-    var builderState = MeshBuilder.createState(vertexCount, vertexCount / 2, mesh);
-    var axes = unit.principalAxes.boxAxes;
-    var origin = axes.origin, dirA = axes.dirA, dirB = axes.dirB;
-    var size = Axes3D.size(Vec3(), axes);
-    Vec3.scale(size, size, sizeFactor / 2);
-    var radiusScale = Vec3.create(size[2], size[1], size[0]);
-    builderState.currentGroup = 0;
-    addEllipsoid(builderState, origin, dirA, dirB, radiusScale, detail + 1);
-    var m = MeshBuilder.getMesh(builderState);
-    var sphere = Sphere3D.expand(Sphere3D(), unit.boundary.sphere, 1 * props.sizeFactor);
-    m.setBoundingSphere(sphere);
-    return m;
-}
-//# sourceMappingURL=orientation-ellipsoid-mesh%20copy.js.map

package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js.map

@@ -1 +0,0 @@
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package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.js.map

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package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.js.map

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package/lib/mol-repr/structure/visual/polymer-backbone-sphere.js.map

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package/lib/mol-repr/structure/visual/polymer-direction-wedge.js.map

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package/lib/mol-repr/structure/visual/polymer-gap-cylinder.js.map

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package/lib/mol-repr/structure/visual/polymer-tube-mesh.js.map

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package/lib/mol-repr/structure/visual/util/bond.js.map

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package/lib/mol-repr/structure/visual/util/color.d.ts

@@ -1,24 +0,0 @@
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { MeshValues } from '../../../../mol-gl/renderable/mesh';
-import { TextureMeshValues } from '../../../../mol-gl/renderable/texture-mesh';
-import { WebGLContext } from '../../../../mol-gl/webgl/context';
-import { Texture } from '../../../../mol-gl/webgl/texture';
-import { Theme } from '../../../../mol-theme/theme';
-import { ParamDefinition as PD } from '../../../../mol-util/param-definition';
-export declare const ColorSmoothingParams: {
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
-        resolutionFactor: number;
-        sampleStride: number;
-    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "auto">>;
-};
-export declare type ColorSmoothingParams = typeof ColorSmoothingParams;
-export declare function getColorSmoothingProps(props: PD.Values<ColorSmoothingParams>, theme: Theme, resolution?: number): {
-    resolution: number;
-    stride: number;
-} | undefined;
-export declare function applyMeshColorSmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
-export declare function applyTextureMeshColorSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;

package/lib/mol-repr/structure/visual/util/color.js

@@ -1,94 +0,0 @@
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { calcMeshColorSmoothing } from '../../../../mol-geo/geometry/mesh/color-smoothing';
-import { calcTextureMeshColorSmoothing } from '../../../../mol-geo/geometry/texture-mesh/color-smoothing';
-import { smoothstep } from '../../../../mol-math/interpolate';
-import { ValueCell } from '../../../../mol-util';
-import { ParamDefinition as PD } from '../../../../mol-util/param-definition';
-export var ColorSmoothingParams = {
-    smoothColors: PD.MappedStatic('auto', {
-        auto: PD.Group({}),
-        on: PD.Group({
-            resolutionFactor: PD.Numeric(2, { min: 0.5, max: 6, step: 0.1 }),
-            sampleStride: PD.Numeric(3, { min: 1, max: 12, step: 1 }),
-        }),
-        off: PD.Group({})
-    }),
-};
-export function getColorSmoothingProps(props, theme, resolution) {
-    if ((props.smoothColors.name === 'on' || (props.smoothColors.name === 'auto' && theme.color.preferSmoothing)) && resolution && resolution < 3) {
-        var stride = 3;
-        if (props.smoothColors.name === 'on') {
-            resolution *= props.smoothColors.params.resolutionFactor;
-            stride = props.smoothColors.params.sampleStride;
-        }
-        else {
-            // https://graphtoy.com/?f1(x,t)=(2-smoothstep(0,1.1,x))*x&coords=0.7,0.6,1.8
-            resolution *= 2 - smoothstep(0, 1.1, resolution);
-            resolution = Math.max(0.5, resolution);
-            if (resolution > 1.2)
-                stride = 2;
-        }
-        return { resolution: resolution, stride: stride };
-    }
-    ;
-}
-function isSupportedColorType(x) {
-    return x === 'group' || x === 'groupInstance';
-}
-export function applyMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
-    if (!isSupportedColorType(values.dColorType.ref.value))
-        return;
-    var smoothingData = calcMeshColorSmoothing({
-        vertexCount: values.uVertexCount.ref.value,
-        instanceCount: values.uInstanceCount.ref.value,
-        groupCount: values.uGroupCount.ref.value,
-        transformBuffer: values.aTransform.ref.value,
-        instanceBuffer: values.aInstance.ref.value,
-        positionBuffer: values.aPosition.ref.value,
-        groupBuffer: values.aGroup.ref.value,
-        colorData: values.tColor.ref.value,
-        colorType: values.dColorType.ref.value,
-        boundingSphere: values.boundingSphere.ref.value,
-        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
-    }, resolution, stride, webgl, colorTexture);
-    if (smoothingData.kind === 'volume') {
-        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-        ValueCell.update(values.tColorGrid, smoothingData.texture);
-        ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
-        ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
-        ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
-    }
-    else if (smoothingData.kind === 'vertex') {
-        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-        ValueCell.update(values.tColor, smoothingData.texture);
-        ValueCell.update(values.uColorTexDim, smoothingData.texDim);
-    }
-}
-export function applyTextureMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
-    if (!isSupportedColorType(values.dColorType.ref.value))
-        return;
-    stride *= 3; // triple because TextureMesh is never indexed (no elements buffer)
-    var smoothingData = calcTextureMeshColorSmoothing({
-        vertexCount: values.uVertexCount.ref.value,
-        instanceCount: values.uInstanceCount.ref.value,
-        groupCount: values.uGroupCount.ref.value,
-        transformBuffer: values.aTransform.ref.value,
-        instanceBuffer: values.aInstance.ref.value,
-        positionTexture: values.tPosition.ref.value,
-        groupTexture: values.tGroup.ref.value,
-        colorData: values.tColor.ref.value,
-        colorType: values.dColorType.ref.value,
-        boundingSphere: values.boundingSphere.ref.value,
-        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
-    }, resolution, stride, webgl, colorTexture);
-    ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-    ValueCell.update(values.tColorGrid, smoothingData.texture);
-    ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
-    ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
-    ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
-}
-//# sourceMappingURL=color.js.map

package/lib/mol-repr/structure/visual/util/color.js.map

@@ -1 +0,0 @@
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package/lib/mol-repr/structure/visual/util/common.js.map

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