molstar 2.3.8 → 3.0.0-dev.0

package/lib/commonjs/mol-geo/geometry/points/points.d.ts

@@ -41,6 +41,10 @@ export declare namespace Points {
         pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
         alpha: PD.Numeric;
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+        material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+            metalness: number;
+            roughness: number;
+        }>>;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Points, Params>;

package/lib/commonjs/mol-geo/geometry/points/points.js

@@ -22,6 +22,7 @@ var overpaint_data_1 = require("../overpaint-data");
 var transparency_data_1 = require("../transparency-data");
 var util_3 = require("../../../mol-data/util");
 var clipping_data_1 = require("../clipping-data");
+var substance_data_1 = require("../substance-data");
 var Points;
 (function (Points) {
     function create(centers, groups, pointCount, points) {
@@ -131,11 +132,12 @@ var Points;
         var marker = (0, marker_data_1.createMarkers)(instanceCount * groupCount);
         var overpaint = (0, overpaint_data_1.createEmptyOverpaint)();
         var transparency = (0, transparency_data_1.createEmptyTransparency)();
+        var material = (0, substance_data_1.createEmptySubstance)();
         var clipping = (0, clipping_data_1.createEmptyClipping)();
         var counts = { drawCount: points.pointCount, vertexCount: points.pointCount, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(points.boundingSphere);
         var boundingSphere = (0, util_2.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aPosition: points.centerBuffer, aGroup: points.groupBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dPointSizeAttenuation: mol_util_1.ValueCell.create(props.pointSizeAttenuation), dPointStyle: mol_util_1.ValueCell.create(props.pointStyle) });
+        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aPosition: points.centerBuffer, aGroup: points.groupBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dPointSizeAttenuation: mol_util_1.ValueCell.create(props.pointSizeAttenuation), dPointStyle: mol_util_1.ValueCell.create(props.pointStyle) });
     }
     function createValuesSimple(points, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);

package/lib/commonjs/mol-geo/geometry/points/points.js.map

@@ -1 +1 @@
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+{"version":3,"file":"points.js","sourceRoot":"","sources":["../../../../../src/mol-geo/geometry/points/points.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAA8C;AAC9C,mEAAoE;AACpE,mCAAsF;AAEtF,4CAA6C;AAC7C,8CAA+C;AAC/C,0CAA2C;AAE3C,kEAAkF;AAClF,uEAA2E;AAC3E,wDAAqH;AACrH,uDAAsD;AAKtD,gCAAuC;AACvC,oDAAyD;AACzD,0DAA+D;AAC/D,+CAAoD;AACpD,kDAAuD;AACvD,oDAAyD;AAsBzD,IAAiB,MAAM,CAiMtB;AAjMD,WAAiB,MAAM;IACnB,SAAgB,MAAM,CAAC,OAAqB,EAAE,MAAoB,EAAE,UAAkB,EAAE,MAAe;QACnG,OAAO,MAAM,CAAC,CAAC;YACX,MAAM,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC;YAC7C,UAAU,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,CAAC,CAAC;IAChD,CAAC;IAJe,aAAM,SAIrB,CAAA;IAED,SAAgB,WAAW,CAAC,MAAe;QACvC,IAAM,EAAE,GAAG,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,YAAY,CAAC,CAAC,CAAC,CAAC;QACxE,IAAM,EAAE,GAAG,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,YAAY,CAAC,CAAC,CAAC,CAAC;QACvE,OAAO,MAAM,CAAC,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,MAAM,CAAC,CAAC;IACrC,CAAC;IAJe,kBAAW,cAI1B,CAAA;IAED,SAAS,QAAQ,CAAC,MAAc;QAC5B,OAAO,IAAA,iBAAU,EAAC;YACd,MAAM,CAAC,UAAU,EAAE,MAAM,CAAC,YAAY,CAAC,GAAG,CAAC,OAAO,EAAE,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,OAAO;SACrF,CAAC,CAAC;IACP,CAAC;IAED,SAAS,UAAU,CAAC,OAAqB,EAAE,MAAoB,EAAE,UAAkB;QAE/E,IAAM,cAAc,GAAG,IAAA,mBAAQ,GAAE,CAAC;QAClC,IAAI,YAA0B,CAAC;QAE/B,IAAI,WAAW,GAAG,CAAC,CAAC,CAAC;QACrB,IAAI,YAAY,GAAG,CAAC,CAAC,CAAC;QAEtB,IAAM,MAAM,GAAG;YACX,IAAI,EAAE,QAAiB;YACvB,UAAU,YAAA;YACV,YAAY,EAAE,oBAAS,CAAC,MAAM,CAAC,OAAO,CAAC;YACvC,WAAW,EAAE,oBAAS,CAAC,MAAM,CAAC,MAAM,CAAC;YACrC,IAAI,cAAc;gBACd,IAAM,OAAO,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC;gBACjC,IAAI,OAAO,KAAK,WAAW,EAAE;oBACzB,IAAM,CAAC,GAAG,IAAA,uCAAgC,EAAC,MAAM,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,UAAU,EAAE,CAAC,CAAC,CAAC;oBAChG,mBAAQ,CAAC,IAAI,CAAC,cAAc,EAAE,CAAC,CAAC,CAAC;oBACjC,WAAW,GAAG,OAAO,CAAC;iBACzB;gBACD,OAAO,cAAc,CAAC;YAC1B,CAAC;YACD,IAAI,YAAY;gBACZ,IAAI,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,OAAO,KAAK,YAAY,EAAE;oBACjD,YAAY,GAAG,IAAA,yBAAkB,EAAC,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC;oBACnF,YAAY,GAAG,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,OAAO,CAAC;iBACjD;gBACD,OAAO,YAAY,CAAC;YACxB,CAAC;YACD,iBAAiB,EAAjB,UAAkB,MAAgB;gBAC9B,mBAAQ,CAAC,IAAI,CAAC,cAAc,EAAE,MAAM,CAAC,CAAC;gBACtC,WAAW,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC;YACnC,CAAC;SACJ,CAAC;QACF,OAAO,MAAM,CAAC;IAClB,CAAC;IAED,SAAS,MAAM,CAAC,OAAqB,EAAE,MAAoB,EAAE,UAAkB,EAAE,MAAc;QAC3F,MAAM,CAAC,UAAU,GAAG,UAAU,CAAC;QAC/B,oBAAS,CAAC,MAAM,CAAC,MAAM,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;QAC/C,oBAAS,CAAC,MAAM,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,CAAC;QAC7C,OAAO,MAAM,CAAC;IAClB,CAAC;IAED,SAAgB,SAAS,CAAC,MAAc,EAAE,CAAO;QAC7C,IAAM,CAAC,GAAG,MAAM,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC;QACxC,IAAA,6BAAsB,EAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC;QACnD,oBAAS,CAAC,MAAM,CAAC,MAAM,CAAC,YAAY,EAAE,CAAC,CAAC,CAAC;IAC7C,CAAC;IAJe,gBAAS,YAIxB,CAAA;IAED,EAAE;IAEW,iBAAU,GAAG;QACtB,QAAQ,EAAE,QAAQ;QAClB,QAAQ,EAAE,QAAQ;QAClB,OAAO,EAAE,OAAO;KACnB,CAAC;IAEW,qBAAc,GAAG,MAAM,CAAC,IAAI,CAAC,OAAA,UAAU,CAAiB,CAAC;IAEzD,aAAM,mDACZ,mBAAY,CAAC,MAAM,KACtB,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EACzD,oBAAoB,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EACvC,UAAU,EAAE,kCAAE,CAAC,MAAM,CAAC,QAAQ,EAAE,kCAAE,CAAC,eAAe,CAAC,OAAA,UAAU,CAAC,CAAC,GAClE,CAAC;IAGW,YAAK,GAAkC;QAChD,MAAM,eAAA;QACN,WAAW,aAAA;QACX,YAAY,cAAA;QACZ,kBAAkB,oBAAA;QAClB,YAAY,cAAA;QACZ,oBAAoB,sBAAA;QACpB,qBAAqB,uBAAA;QACrB,qBAAqB,uBAAA;QACrB,sBAAsB,wBAAA;KACzB,CAAC;IAEF,SAAS,sBAAsB,CAAC,MAAc,EAAE,SAAwB;QACpE,IAAM,UAAU,GAAG,MAAM,CAAC,UAAU,CAAC;QACrC,IAAM,aAAa,GAAG,SAAS,CAAC,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC;QACxD,IAAM,QAAQ,GAAG,IAAA,oCAAgB,GAAE,CAAC;QACpC,IAAM,CAAC,GAAG,QAAQ,CAAC,QAAQ,CAAC;QAC5B,IAAM,CAAC,GAAG,MAAM,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC;QACxC,IAAM,CAAC,GAAG,SAAS,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC;QACzC,IAAM,WAAW,GAAG,UAAC,UAAkB,EAAE,aAAqB;YAC1D,IAAI,aAAa,GAAG,CAAC,EAAE;gBACnB,qBAAI,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,UAAU,GAAG,CAAC,CAAC,CAAC;aACxC;iBAAM;gBACH,qBAAI,CAAC,mBAAmB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,UAAU,GAAG,CAAC,EAAE,aAAa,GAAG,EAAE,CAAC,CAAC;aAC5E;YACD,OAAO,QAAQ,CAAC;QACpB,CAAC,CAAC;QACF,OAAO,IAAA,oCAAgB,EAAC,UAAU,EAAE,aAAa,EAAE,CAAC,EAAE,WAAW,CAAC,CAAC;IACvE,CAAC;IAED,SAAS,YAAY,CAAC,MAAc,EAAE,SAAwB,EAAE,UAA4B,EAAE,KAAY,EAAE,KAAwB;QACxH,IAAA,aAAa,GAAiB,UAAU,cAA3B,EAAE,UAAU,GAAK,UAAU,WAAf,CAAgB;QACjD,IAAM,UAAU,GAAG,sBAAsB,CAAC,MAAM,EAAE,SAAS,CAAC,CAAC;QAE7D,IAAM,KAAK,GAAG,IAAA,yBAAY,EAAC,UAAU,EAAE,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC;QAChE,IAAM,IAAI,GAAG,IAAA,uBAAW,EAAC,UAAU,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;QACjD,IAAM,MAAM,GAAG,IAAA,2BAAa,EAAC,aAAa,GAAG,UAAU,CAAC,CAAC;QACzD,IAAM,SAAS,GAAG,IAAA,qCAAoB,GAAE,CAAC;QACzC,IAAM,YAAY,GAAG,IAAA,2CAAuB,GAAE,CAAC;QAC/C,IAAM,QAAQ,GAAG,IAAA,qCAAoB,GAAE,CAAC;QACxC,IAAM,QAAQ,GAAG,IAAA,mCAAmB,GAAE,CAAC;QAEvC,IAAM,MAAM,GAAG,EAAE,SAAS,EAAE,MAAM,CAAC,UAAU,EAAE,WAAW,EAAE,MAAM,CAAC,UAAU,EAAE,UAAU,YAAA,EAAE,aAAa,eAAA,EAAE,CAAC;QAE3G,IAAM,uBAAuB,GAAG,mBAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC;QACtE,IAAM,cAAc,GAAG,IAAA,uCAAgC,EAAC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package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts

@@ -35,8 +35,11 @@ export declare namespace Spheres {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        /** Number of spheres */
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+        material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+            metalness: number;
+            roughness: number;
+        }>>;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Spheres, Params>;

package/lib/commonjs/mol-geo/geometry/spheres/spheres.js

@@ -22,6 +22,7 @@ var util_2 = require("../../../mol-data/util");
 var util_3 = require("../../util");
 var clipping_data_1 = require("../clipping-data");
 var linear_algebra_1 = require("../../../mol-math/linear-algebra");
+var substance_data_1 = require("../substance-data");
 var Spheres;
 (function (Spheres) {
     function create(centers, mappings, indices, groups, sphereCount, spheres) {
@@ -128,12 +129,13 @@ var Spheres;
         var marker = (0, marker_data_1.createMarkers)(instanceCount * groupCount);
         var overpaint = (0, overpaint_data_1.createEmptyOverpaint)();
         var transparency = (0, transparency_data_1.createEmptyTransparency)();
+        var material = (0, substance_data_1.createEmptySubstance)();
         var clipping = (0, clipping_data_1.createEmptyClipping)();
         var counts = { drawCount: spheres.sphereCount * 2 * 3, vertexCount: spheres.sphereCount * 4, groupCount: groupCount, instanceCount: instanceCount };
         var padding = spheres.boundingSphere.radius ? (0, size_data_1.getMaxSize)(size) * props.sizeFactor : 0;
         var invariantBoundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), spheres.boundingSphere, padding);
         var boundingSphere = (0, util_1.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aPosition: spheres.centerBuffer, aMapping: spheres.mappingBuffer, aGroup: spheres.groupBuffer, elements: spheres.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), clipping), transform), { padding: mol_util_1.ValueCell.create(padding) }), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded) });
+        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aPosition: spheres.centerBuffer, aMapping: spheres.mappingBuffer, aGroup: spheres.groupBuffer, elements: spheres.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), { padding: mol_util_1.ValueCell.create(padding) }), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded) });
     }
     function createValuesSimple(spheres, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);

package/lib/commonjs/mol-geo/geometry/spheres/spheres.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-geo/geometry/substance-data.d.ts

@@ -0,0 +1,23 @@
+/**
+ * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ *
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ */
+import { ValueCell } from '../../mol-util/value-cell';
+import { Vec2, Vec3, Vec4 } from '../../mol-math/linear-algebra';
+import { TextureImage } from '../../mol-gl/renderable/util';
+import { Texture } from '../../mol-gl/webgl/texture';
+import { Material } from '../../mol-util/material';
+export declare type SubstanceData = {
+    tSubstance: ValueCell<TextureImage<Uint8Array>>;
+    uSubstanceTexDim: ValueCell<Vec2>;
+    dSubstance: ValueCell<boolean>;
+    tSubstanceGrid: ValueCell<Texture>;
+    uSubstanceGridDim: ValueCell<Vec3>;
+    uSubstanceGridTransform: ValueCell<Vec4>;
+    dSubstanceType: ValueCell<string>;
+};
+export declare function applySubstanceMaterial(array: Uint8Array, start: number, end: number, material: Material): boolean;
+export declare function clearSubstance(array: Uint8Array, start: number, end: number): boolean;
+export declare function createSubstance(count: number, substanceData?: SubstanceData): SubstanceData;
+export declare function createEmptySubstance(substanceData?: SubstanceData): SubstanceData;

package/lib/commonjs/mol-geo/geometry/substance-data.js

@@ -0,0 +1,68 @@
+"use strict";
+/**
+ * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ *
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.createEmptySubstance = exports.createSubstance = exports.clearSubstance = exports.applySubstanceMaterial = void 0;
+var value_cell_1 = require("../../mol-util/value-cell");
+var linear_algebra_1 = require("../../mol-math/linear-algebra");
+var util_1 = require("../../mol-gl/renderable/util");
+var texture_1 = require("../../mol-gl/webgl/texture");
+var material_1 = require("../../mol-util/material");
+function applySubstanceMaterial(array, start, end, material) {
+    for (var i = start; i < end; ++i) {
+        material_1.Material.toArray(material, array, i * 3);
+        array[i * 3 + 2] = 255;
+    }
+    return true;
+}
+exports.applySubstanceMaterial = applySubstanceMaterial;
+function clearSubstance(array, start, end) {
+    array.fill(0, start * 3, end * 3);
+    return true;
+}
+exports.clearSubstance = clearSubstance;
+function createSubstance(count, substanceData) {
+    var substance = (0, util_1.createTextureImage)(Math.max(1, count), 4, Uint8Array, substanceData && substanceData.tSubstance.ref.value.array);
+    if (substanceData) {
+        value_cell_1.ValueCell.update(substanceData.tSubstance, substance);
+        value_cell_1.ValueCell.update(substanceData.uSubstanceTexDim, linear_algebra_1.Vec2.create(substance.width, substance.height));
+        value_cell_1.ValueCell.updateIfChanged(substanceData.dSubstance, count > 0);
+        return substanceData;
+    }
+    else {
+        return {
+            tSubstance: value_cell_1.ValueCell.create(substance),
+            uSubstanceTexDim: value_cell_1.ValueCell.create(linear_algebra_1.Vec2.create(substance.width, substance.height)),
+            dSubstance: value_cell_1.ValueCell.create(count > 0),
+            tSubstanceGrid: value_cell_1.ValueCell.create((0, texture_1.createNullTexture)()),
+            uSubstanceGridDim: value_cell_1.ValueCell.create(linear_algebra_1.Vec3.create(1, 1, 1)),
+            uSubstanceGridTransform: value_cell_1.ValueCell.create(linear_algebra_1.Vec4.create(0, 0, 0, 1)),
+            dSubstanceType: value_cell_1.ValueCell.create('groupInstance'),
+        };
+    }
+}
+exports.createSubstance = createSubstance;
+var emptySubstanceTexture = { array: new Uint8Array(4), width: 1, height: 1 };
+function createEmptySubstance(substanceData) {
+    if (substanceData) {
+        value_cell_1.ValueCell.update(substanceData.tSubstance, emptySubstanceTexture);
+        value_cell_1.ValueCell.update(substanceData.uSubstanceTexDim, linear_algebra_1.Vec2.create(1, 1));
+        return substanceData;
+    }
+    else {
+        return {
+            tSubstance: value_cell_1.ValueCell.create(emptySubstanceTexture),
+            uSubstanceTexDim: value_cell_1.ValueCell.create(linear_algebra_1.Vec2.create(1, 1)),
+            dSubstance: value_cell_1.ValueCell.create(false),
+            tSubstanceGrid: value_cell_1.ValueCell.create((0, texture_1.createNullTexture)()),
+            uSubstanceGridDim: value_cell_1.ValueCell.create(linear_algebra_1.Vec3.create(1, 1, 1)),
+            uSubstanceGridTransform: value_cell_1.ValueCell.create(linear_algebra_1.Vec4.create(0, 0, 0, 1)),
+            dSubstanceType: value_cell_1.ValueCell.create('groupInstance'),
+        };
+    }
+}
+exports.createEmptySubstance = createEmptySubstance;
+//# sourceMappingURL=substance-data.js.map

package/lib/commonjs/mol-geo/geometry/substance-data.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"substance-data.js","sourceRoot":"","sources":["../../../../src/mol-geo/geometry/substance-data.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,wDAAsD;AACtD,gEAAiE;AACjE,qDAAgF;AAChF,sDAAwE;AACxE,oDAAmD;AAanD,SAAgB,sBAAsB,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW,EAAE,QAAkB;IACpG,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,EAAE;QAC9B,mBAAQ,CAAC,OAAO,CAAC,QAAQ,EAAE,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;QACzC,KAAK,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC;KAC1B;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAND,wDAMC;AAED,SAAgB,cAAc,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW;IACxE,KAAK,CAAC,IAAI,CAAC,CAAC,EAAE,KAAK,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,CAAC,CAAC;IAClC,OAAO,IAAI,CAAC;AAChB,CAAC;AAHD,wCAGC;AAED,SAAgB,eAAe,CAAC,KAAa,EAAE,aAA6B;IACxE,IAAM,SAAS,GAAG,IAAA,yBAAkB,EAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,CAAC,EAAE,UAAU,EAAE,aAAa,IAAI,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IACnI,IAAI,aAAa,EAAE;QACf,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QACtD,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,qBAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC;QACjG,sBAAS,CAAC,eAAe,CAAC,aAAa,CAAC,UAAU,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QAC/D,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,SAAS,CAAC;YACvC,gBAAgB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;YAClF,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;YAEvC,cAAc,EAAE,sBAAS,CAAC,MAAM,CAAC,IAAA,2BAAiB,GAAE,CAAC;YACrD,iBAAiB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACzD,uBAAuB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAClE,cAAc,EAAE,sBAAS,CAAC,MAAM,CAAC,eAAe,CAAC;SACpD,CAAC;KACL;AACL,CAAC;AAnBD,0CAmBC;AAED,IAAM,qBAAqB,GAAG,EAAE,KAAK,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;AAChF,SAAgB,oBAAoB,CAAC,aAA6B;IAC9D,IAAI,aAAa,EAAE;QACf,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,qBAAqB,CAAC,CAAC;QAClE,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;QACpE,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAqB,CAAC;YACnD,gBAAgB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YACrD,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,KAAK,CAAC;YAEnC,cAAc,EAAE,sBAAS,CAAC,MAAM,CAAC,IAAA,2BAAiB,GAAE,CAAC;YACrD,iBAAiB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACzD,uBAAuB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAClE,cAAc,EAAE,sBAAS,CAAC,MAAM,CAAC,eAAe,CAAC;SACpD,CAAC;KACL;AACL,CAAC;AAjBD,oDAiBC"}

package/lib/commonjs/mol-geo/geometry/text/text.d.ts

@@ -60,6 +60,10 @@ export declare namespace Text {
         fontWeight: PD.Select<import("./font-atlas").FontWeight>;
         alpha: PD.Numeric;
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+        material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+            metalness: number;
+            roughness: number;
+        }>>;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Text, Params>;

package/lib/commonjs/mol-geo/geometry/text/text.js

@@ -26,6 +26,7 @@ var transparency_data_1 = require("../transparency-data");
 var util_2 = require("../../../mol-data/util");
 var util_3 = require("../../util");
 var clipping_data_1 = require("../clipping-data");
+var substance_data_1 = require("../substance-data");
 var Text;
 (function (Text) {
     function create(fontTexture, centers, mappings, depths, indices, groups, tcoords, charCount, text) {
@@ -144,12 +145,13 @@ var Text;
         var marker = (0, marker_data_1.createMarkers)(instanceCount * groupCount);
         var overpaint = (0, overpaint_data_1.createEmptyOverpaint)();
         var transparency = (0, transparency_data_1.createEmptyTransparency)();
+        var substance = (0, substance_data_1.createEmptySubstance)();
         var clipping = (0, clipping_data_1.createEmptyClipping)();
         var counts = { drawCount: text.charCount * 2 * 3, vertexCount: text.charCount * 4, groupCount: groupCount, instanceCount: instanceCount };
         var padding = getPadding(text.mappingBuffer.ref.value, text.depthBuffer.ref.value, text.charCount, (0, size_data_1.getMaxSize)(size));
         var invariantBoundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), text.boundingSphere, padding);
         var boundingSphere = (0, util_1.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aPosition: text.centerBuffer, aMapping: text.mappingBuffer, aDepth: text.depthBuffer, aGroup: text.groupBuffer, elements: text.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), clipping), transform), { aTexCoord: text.tcoordBuffer, tFont: text.fontTexture, padding: mol_util_1.ValueCell.create(padding) }), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), uBorderWidth: mol_util_1.ValueCell.create((0, interpolate_1.clamp)(props.borderWidth, 0, 0.5)), uBorderColor: mol_util_1.ValueCell.create(color_1.Color.toArrayNormalized(props.borderColor, linear_algebra_1.Vec3.zero(), 0)), uOffsetX: mol_util_1.ValueCell.create(props.offsetX), uOffsetY: mol_util_1.ValueCell.create(props.offsetY), uOffsetZ: mol_util_1.ValueCell.create(props.offsetZ), uBackgroundColor: mol_util_1.ValueCell.create(color_1.Color.toArrayNormalized(props.backgroundColor, linear_algebra_1.Vec3.zero(), 0)), uBackgroundOpacity: mol_util_1.ValueCell.create(props.backgroundOpacity) });
+        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aPosition: text.centerBuffer, aMapping: text.mappingBuffer, aDepth: text.depthBuffer, aGroup: text.groupBuffer, elements: text.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), substance), clipping), transform), { aTexCoord: text.tcoordBuffer, tFont: text.fontTexture, padding: mol_util_1.ValueCell.create(padding) }), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), uBorderWidth: mol_util_1.ValueCell.create((0, interpolate_1.clamp)(props.borderWidth, 0, 0.5)), uBorderColor: mol_util_1.ValueCell.create(color_1.Color.toArrayNormalized(props.borderColor, linear_algebra_1.Vec3.zero(), 0)), uOffsetX: mol_util_1.ValueCell.create(props.offsetX), uOffsetY: mol_util_1.ValueCell.create(props.offsetY), uOffsetZ: mol_util_1.ValueCell.create(props.offsetZ), uBackgroundColor: mol_util_1.ValueCell.create(color_1.Color.toArrayNormalized(props.backgroundColor, linear_algebra_1.Vec3.zero(), 0)), uBackgroundOpacity: mol_util_1.ValueCell.create(props.backgroundOpacity) });
     }
     function createValuesSimple(text, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);

package/lib/commonjs/mol-geo/geometry/text/text.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts

@@ -8,7 +8,7 @@ import { Texture } from '../../../mol-gl/webgl/texture';
 import { ValueSpec, AttributeSpec, UniformSpec, TextureSpec, DefineSpec } from '../../../mol-gl/renderable/schema';
 import { Vec2, Vec3, Vec4 } from '../../../mol-math/linear-algebra';
 import { Sphere3D } from '../../../mol-math/geometry';
-import { TextureImage } from '../../../mol-gl/renderable/util';
+import { TextureMeshValues } from '../../../mol-gl/renderable/texture-mesh';
 export declare const ColorAccumulateSchema: {
     drawCount: ValueSpec<"number">;
     instanceCount: ValueSpec<"number">;
@@ -23,7 +23,7 @@ export declare const ColorAccumulateSchema: {
     tPosition: TextureSpec<"texture">;
     tGroup: TextureSpec<"texture">;
     uColorTexDim: UniformSpec<"v2">;
-    tColor: TextureSpec<"image-uint8">;
+    tColor: TextureSpec<"texture">;
     dColorType: DefineSpec<"string">;
     uCurrentSlice: UniformSpec<"f">;
     uCurrentX: UniformSpec<"f">;
@@ -40,11 +40,12 @@ interface AccumulateInput {
     instanceBuffer: Float32Array;
     positionTexture: Texture;
     groupTexture: Texture;
-    colorData: TextureImage<Uint8Array>;
+    colorData: Texture;
     colorType: 'group' | 'groupInstance';
 }
 export declare const ColorNormalizeSchema: {
     tColor: TextureSpec<"texture">;
+    tCount: TextureSpec<"texture">;
     uTexSize: UniformSpec<"v2">;
     drawCount: ValueSpec<"number">;
     instanceCount: ValueSpec<"number">;
@@ -62,4 +63,8 @@ export declare function calcTextureMeshColorSmoothing(input: ColorSmoothingInput
     gridTransform: Vec4;
     type: string;
 };
+export declare function applyTextureMeshColorSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
+export declare function applyTextureMeshOverpaintSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
+export declare function applyTextureMeshTransparencySmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
+export declare function applyTextureMeshSubstanceSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
 export {};